Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR076490 Cardamine hirsuta HOM05D007356 ORTHO05D009247 1.4e-246 855.9 449 100.0
AL3G11850 Arabidopsis lyrata HOM05D007356 ORTHO05D009247 4.2e-195 684.9 458 82.1
Aa31LG5G12990 Aethionema arabicum HOM05D007356 ORTHO05D009247 1.1e-163 580.5 455 71.0
THA.LOC104820954 Tarenaya hassleriana HOM05D007356 ORTHO05D009247 2.0e-144 516.5 467 64.7
Cpa.g.sc179.26 Carica papaya HOM05D007356 ORTHO05D009247 6.5e-95 352.1 483 47.2
Haze_14128 Corylus avellana HOM05D007356 ORTHO05D009247 7.4e-91 338.6 489 45.0
AL3G11840 Arabidopsis lyrata HOM05D007356 ORTHO05D009247 1.7e-87 327.4 199 87.9
Cfa007946 Carpinus fangiana HOM05D007356 ORTHO05D009247 2.7e-85 320.1 488 43.6
Potri.017G112500 Populus trichocarpa HOM05D007356 ORTHO05D009247 6.1e-85 318.9 471 43.9
Prupe.3G239800 Prunus persica HOM05D007356 ORTHO05D009247 1.8e-84 317.4 485 43.9
Atru.chr8.830 Acer truncatum HOM05D007356 ORTHO05D009247 2.2e-82 310.5 470 42.3
Thecc.04G137600 Theobroma cacao HOM05D007356 ORTHO05D009247 2.0e-80 303.9 469 44.3
CANSAT64G1351 Cannabis sativa HOM05D007356 ORTHO05D009247 7.7e-80 302.0 483 41.6
Ciclev10011716m.g Citrus clementina HOM05D007356 ORTHO05D009247 7.7e-80 302.0 464 44.4
COL.COLO4_16192 Corchorus olitorius HOM05D007356 ORTHO05D009247 2.2e-79 300.4 474 44.7
Duzib133G0592 Durio zibethinus HOM05D007356 ORTHO05D009247 1.5e-78 297.7 474 44.5
Gohir.A11G162300 Gossypium hirsutum HOM05D007356 ORTHO05D009247 2.7e-77 293.5 472 43.2
Sabra17G0093200 Salix brachista HOM05D007356 ORTHO05D009247 3.6e-77 293.1 487 41.5
QL02p052579 Quercus lobata HOM05D007356 ORTHO05D009247 4.7e-77 292.7 588 37.9
Gorai.007G180100 Gossypium raimondii HOM05D007356 ORTHO05D009247 8.0e-77 292.0 473 43.6
arahy.Tifrunner.gnm1.ann1.33CL05 Arachis hypogaea HOM05D007356 ORTHO05D009247 1.0e-76 291.6 473 41.4
arahy.Tifrunner.gnm1.ann1.3VIJ8X Arachis hypogaea HOM05D007356 ORTHO05D009247 1.8e-76 290.8 473 41.4
MD17G1074100 Malus domestica HOM05D007356 ORTHO05D009247 8.8e-76 288.5 506 41.3
ClCG05G012060 Citrullus lanatus HOM05D007356 ORTHO05D009247 5.7e-75 285.8 498 40.0
CsaV3_3G020350 Cucumis sativus L. HOM05D007356 ORTHO05D009247 5.7e-75 285.8 493 39.6
Gohir.D11G168600 Gossypium hirsutum HOM05D007356 ORTHO05D009247 7.5e-75 285.4 473 43.1
MD09G1084700 Malus domestica HOM05D007356 ORTHO05D009247 4.8e-74 282.7 491 43.2
Manes.01G108100 Manihot esculenta HOM05D007356 ORTHO05D009247 1.2e-72 278.1 480 41.2
TWI31G0521 Tripterygium wilfordii HOM05D007356 ORTHO05D009247 4.5e-72 276.2 473 41.2
Hma1.2p1_0136F.1_g062070 Hydrangea macrophylla HOM05D007356 ORTHO05D009247 8.6e-71 271.9 485 40.2
FAN14G2396 Fragaria x ananassa HOM05D007356 ORTHO05D009247 2.5e-70 270.4 479 42.2
FvH4_6g45360 Fragaria vesca HOM05D007356 ORTHO05D009247 3.3e-70 270.0 482 41.5
Rhsim10G0063400 Rhododendron simsii HOM05D007356 ORTHO05D009247 1.6e-69 267.7 486 38.9
Potri.004G102400 Populus trichocarpa HOM05D007356 ORTHO05D009247 2.1e-69 267.3 391 45.8
vmacro05573 Vaccinium macrocarpon HOM05D007356 ORTHO05D009247 6.8e-68 262.3 514 39.1
Aqoxy3G03920 Aquilegia oxysepala HOM05D007356 ORTHO05D009247 1.2e-67 261.5 497 39.0
Lalb_Chr06g0174681 Lupinus albus HOM05D007356 ORTHO05D009247 1.2e-67 261.5 450 41.1
TWI79G1397 Tripterygium wilfordii HOM05D007356 ORTHO05D009247 4.4e-67 259.6 456 41.0
Lj2g0005002 Lotus japonicus HOM05D007356 ORTHO05D009247 3.7e-66 256.5 477 37.7
Actinidia18124 Actinidia chinensis HOM05D007356 ORTHO05D009247 1.4e-65 254.6 411 41.8
TPR.G32461 Trifolium pratense HOM05D007356 ORTHO05D009247 3.2e-65 253.4 490 38.0
Dinv34849 Davidia involucrata HOM05D007356 ORTHO05D009247 5.9e-64 249.2 456 39.7
VMungo0464G1268 Vigna mungo HOM05D007356 ORTHO05D009247 6.6e-63 245.7 481 39.5
Hund13734 Selenicereus undatus HOM05D007356 ORTHO05D009247 8.6e-63 245.4 502 37.6
Medtr6g017235 Medicago truncatula HOM05D007356 ORTHO05D009247 1.1e-62 245.0 475 37.5
TAR374G1737 Trochodendron aralioides HOM05D007356 ORTHO05D009247 1.1e-62 245.0 502 38.0
SGA_v2.0_scaffold33G13428 Striga asiatica HOM05D007356 ORTHO05D009247 2.5e-62 243.8 469 39.9
Migut.H00199 Erythranthe guttata HOM05D007356 ORTHO05D009247 1.6e-61 241.1 448 38.6
Phvul.004G062800 Phaseolus vulgaris HOM05D007356 ORTHO05D009247 3.6e-61 240.0 466 38.6
Glyma.13G047100 Glycine max HOM05D007356 ORTHO05D009247 4.7e-61 239.6 468 38.9
Lsat_1_v5_gn_4_153101 Lactuca sativa HOM05D007356 ORTHO05D009247 1.7e-58 231.1 463 37.8
CSS0016710 Camellia sinensis var. sinensis HOM05D007356 ORTHO05D009247 4.9e-58 229.6 411 40.6
Ah.16g101940 Amaranthus hybridus HOM05D007356 ORTHO05D009247 7.0e-57 225.7 505 35.6
HanXRQChr14g0438671 Helianthus annuus HOM05D007356 ORTHO05D009247 1.6e-56 224.6 477 39.2
PSO063G7355 Papaver somniferum HOM05D007356 ORTHO05D009247 7.8e-56 222.2 507 34.5
Sed0002469 Sechium edule HOM05D007356 ORTHO05D009247 1.7e-55 221.1 249 50.6
Nn4g23745 Nelumbo nucifera HOM05D007356 ORTHO05D009247 2.3e-55 220.7 507 34.9
Cc07_g09030 Coffea canephora HOM05D007356 ORTHO05D009247 3.9e-55 219.9 509 34.2
EL10Ac2g04607 Beta vulgaris HOM05D007356 ORTHO05D009247 1.6e-53 214.5 603 32.2
Nitab4.5_0008781g0020 Nicotiana tabacum HOM05D007356 ORTHO05D009247 3.6e-53 213.4 487 35.3
Solyc02g085740.4 Solanum lycopersicum HOM05D007356 ORTHO05D009247 2.3e-52 210.7 487 34.7
AUR62014539 Chenopodium quinoa HOM05D007356 ORTHO05D009247 6.8e-52 209.1 465 37.6
Oeu030757.2 Olea europaea HOM05D007356 ORTHO05D009247 1.5e-51 208.0 444 37.4
DCAR_017218 Daucus carota HOM05D007356 ORTHO05D009247 2.0e-51 207.6 428 38.1
Nitab4.5_0004118g0090 Nicotiana tabacum HOM05D007356 ORTHO05D009247 5.8e-51 206.1 447 37.4
PGSC0003DMG400012678 Solanum tuberosum HOM05D007356 ORTHO05D009247 5.8e-51 206.1 492 34.8
Sopen02g030430 Solanum pennellii HOM05D007356 ORTHO05D009247 4.9e-50 203.0 492 34.3
MELO3C023764.2 Cucumis melo HOM05D007356 ORTHO05D009247 4.1e-49 199.9 210 52.4
PSO782G4491 Papaver somniferum HOM05D007356 ORTHO05D009247 5.4e-49 199.5 425 37.6
Peaxi162Scf01327g00135 Petunia axillaris HOM05D007356 ORTHO05D009247 5.4e-49 199.5 483 34.0
MBI16_g25107_MAGBIO Magnolia biondii HOM05D007356 ORTHO05D009247 7.1e-49 199.1 505 34.3
PGR042G1693 Punica granatum HOM05D007356 ORTHO05D009247 9.5e-46 188.7 277 46.6
Eucgr.J01469 Eucalyptus grandis HOM05D007356 ORTHO05D009247 2.3e-44 184.1 382 35.1
unitig_60.g25515 Utricularia gibba HOM05D007356 ORTHO05D009247 8.9e-44 182.2 435 35.9
ECA232G5000 Erigeron canadensis HOM05D007356 ORTHO05D009247 5.8e-43 179.5 330 40.0
Sc11g0008200 Simmondsia chinensis HOM05D007356 ORTHO05D009247 2.9e-42 177.2 262 45.0
Psat1g012920 Pisum sativum HOM05D007356 ORTHO05D009247 5.6e-38 162.9 341 35.8
CDE08G0776 Ceratophyllum demersum HOM05D007356 ORTHO05D009247 2.8e-37 160.6 497 33.0
AUR62008964 Chenopodium quinoa HOM05D007356 ORTHO05D009247 5.8e-35 152.9 381 32.8
RcHm_v2.0_Chr2g0163141 Rosa chinensis HOM05D007356 ORTHO05D009247 1.9e-33 147.9 316 36.1
CDE02G0316 Ceratophyllum demersum HOM05D007356 ORTHO05D009247 7.8e-32 142.5 441 33.3
FAN09G4466 Fragaria x ananassa HOM05D007356 ORTHO05D009247 4.0e-28 130.2 319 34.5
ATR0681G386 Amborella trichopoda HOM05D007356 ORTHO05D009247 3.4e-27 127.1 567 29.3
GSVIVG01036444001 Vitis vinifera HOM05D007356 ORTHO05D009247 1.4e-25 121.7 171 43.9
Ca_26179_v3 Cicer arietinum L. HOM05D007356 ORTHO05D009247 5.4e-25 119.8 294 34.0
Os01g0694200 Oryza sativa ssp. japonica HOM05D007356 ORTHO05D009247 3.0e-23 114.0 464 28.4
Zm00001eb155990 Zea mays HOM05D007356 ORTHO05D009247 8.1e-21 105.9 471 28.9
Lj2A447T55 Lonicera japonica HOM05D007356 ORTHO05D009247 3.4e-19 100.5 171 39.2
CiPaw.03G059600 Carya illinoinensis HOM05D007356 ORTHO05D009247 1.3e-18 98.6 268 31.0
Glyma.19G045202 Glycine max HOM05D007356 ORTHO05D009247 2.1e-16 91.3 175 38.3
Aqoxy3G02147 Aquilegia oxysepala HOM05D007356 ORTHO05D009247 4.6e-16 90.1 145 35.9
AUR62035477 Chenopodium quinoa HOM05D000128 ORTHO05D000059 8.7e-15 85.9 89 47.2
Sed0015927 Sechium edule HOM05D007356 ORTHO05D009247 3.3e-14 84.0 177 36.7
AagrBONN_evm.TU.Sc2ySwM_344.3211 Anthoceros agrestis HOM05D007356 ORTHO05D009247 1.3e-10 72.0 226 27.4
SEGI_12886 Sequoiadendron giganteum HOM05D007356 ORTHO05D009247 2.9e-10 70.9 289 27.3
Lsat_1_v5_gn_3_87441 Lactuca sativa HOM05D007356 ORTHO05D009247 2.5e-09 67.8 129 34.1
Sc11g0008210 Simmondsia chinensis HOM05D007356 ORTHO05D009247 3.2e-09 67.4 159 32.7


User provided reference genes

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