Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 1.9e-179 632.5 346 100.0
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 1.1e-155 553.5 346 85.3
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 1.8e-153 546.2 349 86.5
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 1.2e-152 543.5 349 87.1
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 5.8e-152 541.2 346 83.2
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 1.4e-150 536.6 346 84.4
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 1.4e-150 536.6 346 81.5
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 5.5e-150 534.6 346 75.7
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 4.6e-149 531.6 346 82.4
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 7.9e-149 530.8 347 86.5
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 1.0e-148 530.4 346 78.0
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 1.1e-145 520.4 346 75.1
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 1.2e-144 516.9 341 75.4
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 2.6e-144 515.8 349 83.7
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 2.2e-143 512.7 346 75.1
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 2.2e-143 512.7 347 71.5
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 2.9e-143 512.3 344 74.7
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 2.9e-143 512.3 348 77.3
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 8.4e-143 510.8 346 72.3
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.4e-142 510.0 346 74.3
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.5e-142 509.2 341 70.7
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 4.2e-142 508.4 346 76.0
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 4.2e-142 508.4 341 71.8
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 7.1e-142 507.7 348 73.0
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 2.1e-141 506.1 344 73.0
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 4.6e-141 505.0 346 74.0
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 1.0e-140 503.8 350 70.6
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.0e-140 503.8 346 74.3
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 1.8e-140 503.1 346 78.9
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 2.3e-140 502.7 347 72.0
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 3.0e-140 502.3 347 74.6
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 3.9e-140 501.9 346 72.3
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.1e-140 501.5 357 68.9
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 6.7e-140 501.1 343 75.8
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 2.5e-139 499.2 339 73.2
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 5.7e-139 498.0 346 73.1
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 2.8e-138 495.7 341 71.0
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 3.7e-138 495.4 341 71.6
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 4.8e-138 495.0 344 75.3
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 4.8e-138 495.0 347 68.9
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 6.3e-138 494.6 347 70.0
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 6.3e-138 494.6 350 72.3
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 8.2e-138 494.2 349 72.8
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 6.9e-137 491.1 346 72.0
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 6.9e-137 491.1 346 68.8
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 3.4e-136 488.8 349 72.8
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 5.9e-136 488.0 346 72.0
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 3.8e-135 485.3 347 69.5
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 1.4e-134 483.4 345 69.6
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 1.4e-134 483.4 346 75.1
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 3.2e-134 482.3 346 66.8
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 5.5e-134 481.5 348 67.8
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 9.3e-134 480.7 346 68.5
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 9.3e-134 480.7 343 68.2
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 1.2e-133 480.3 346 76.0
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 1.6e-133 479.9 341 70.1
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.7e-133 479.2 342 71.9
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 7.9e-133 477.6 342 71.6
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 7.9e-133 477.6 343 73.5
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 2.3e-132 476.1 342 69.3
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 8.8e-132 474.2 346 74.3
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 4.3e-131 471.9 342 72.5
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.7e-131 471.5 347 71.5
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 7.4e-131 471.1 347 69.5
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 4.8e-130 468.4 342 70.8
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 1.8e-129 466.5 348 67.5
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 1.8e-129 466.5 342 67.8
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 2.4e-129 466.1 346 67.6
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 4.1e-129 465.3 346 70.2
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 5.3e-129 464.9 346 72.3
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 6.9e-129 464.5 348 71.3
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 6.9e-129 464.5 343 73.5
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 9.1e-129 464.2 348 71.0
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 1.5e-128 463.4 342 71.6
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 2.0e-128 463.0 340 68.5
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 4.5e-128 461.8 341 69.8
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 4.5e-128 461.8 342 65.2
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 7.7e-128 461.1 341 72.1
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 1.0e-127 460.7 346 69.1
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.7e-127 459.9 349 67.0
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 1.7e-127 459.9 348 68.1
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 2.2e-127 459.5 346 69.9
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 2.2e-127 459.5 346 69.4
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 8.5e-127 457.6 346 69.9
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 1.1e-126 457.2 341 71.3
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.4e-126 456.8 349 66.8
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 2.5e-126 456.1 345 67.5
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 3.2e-126 455.7 341 68.3
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 3.2e-126 455.7 368 62.8
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 5.5e-126 454.9 345 70.1
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 7.2e-126 454.5 347 67.7
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 1.2e-125 453.8 300 82.0
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.6e-125 453.4 345 70.1
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 2.1e-125 453.0 347 66.3
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 1.4e-124 450.3 446 55.2
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 5.1e-124 448.4 347 68.9
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 5.1e-124 448.4 348 68.4
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 6.7e-124 448.0 342 67.3
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 8.8e-124 447.6 340 67.6
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 2.0e-123 446.4 324 66.7
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 3.3e-123 445.7 344 66.0
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 1.3e-122 443.7 341 63.9
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 1.7e-122 443.4 346 68.5
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 2.2e-122 443.0 350 65.4
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 4.5e-120 435.3 344 64.8
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 7.7e-120 434.5 348 69.5
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.7e-119 433.3 351 69.8
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 1.1e-118 430.6 323 74.3
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 3.2e-118 429.1 348 68.7
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 5.5e-118 428.3 307 69.1
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 9.4e-118 427.6 344 66.0
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 2.1e-117 426.4 346 59.5
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 2.7e-117 426.0 342 63.5
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.8e-116 423.3 342 59.9
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 3.3e-115 419.1 341 65.7
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 4.8e-114 415.2 347 59.1
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 3.5e-112 409.1 342 59.9
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 4.5e-112 408.7 305 71.1
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 5.9e-112 408.3 346 56.4
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 7.7e-112 407.9 289 77.5
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 1.3e-111 407.1 356 60.4
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.3e-111 407.1 349 57.6
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 6.5e-111 404.8 345 56.5
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 3.2e-110 402.5 344 62.8
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 5.5e-110 401.7 256 76.2
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 3.6e-109 399.1 292 74.3
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 3.6e-109 399.1 343 56.0
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 6.1e-109 398.3 349 57.9
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 3.0e-108 396.0 286 77.3
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 2.0e-107 393.3 425 56.5
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 8.2e-106 387.9 292 68.8
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 2.0e-104 383.3 342 58.2
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 2.7e-104 382.9 342 58.2
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 4.5e-104 382.1 356 63.5
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 5.9e-104 381.7 343 54.8
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 5.0e-103 378.6 292 65.1
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 1.1e-102 377.5 339 56.9
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 1.5e-99 367.1 337 56.7
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 1.7e-95 353.6 244 79.9
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 2.8e-93 346.3 244 85.2
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 3.0e-92 342.8 245 77.1
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 1.7e-90 337.0 297 65.7
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 3.3e-86 322.8 244 66.4
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 2.8e-85 319.7 338 46.7
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 3.6e-85 319.3 251 63.7
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 1.8e-84 317.0 246 68.7
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.2e-83 314.3 240 66.7
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 2.9e-82 309.7 351 47.6
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.4e-81 307.4 346 48.8
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 1.9e-81 307.0 239 66.1
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 8.6e-79 298.1 187 77.5
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 2.5e-78 296.6 277 56.7
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 4.3e-78 295.8 343 41.4
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 7.3e-78 295.0 224 68.3
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 1.4e-73 280.8 345 42.9
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 4.3e-70 269.2 338 46.2
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 2.0e-67 260.4 256 51.2
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 3.7e-66 256.1 257 50.6
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 6.0e-64 248.8 145 78.6
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 2.6e-59 233.4 236 50.4
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.1e-57 228.0 254 46.5
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 7.1e-57 225.3 130 79.2
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.6e-51 206.8 140 70.0
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 7.6e-43 178.7 105 79.0
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.0e-40 169.1 131 66.4
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.3e-38 163.3 128 65.6
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 7.6e-35 152.1 143 59.4
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 1.1e-33 148.3 114 64.9
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 2.5e-25 120.6 72 76.4
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 4.3e-22 109.8 346 25.1
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 5.9e-19 99.4 54 72.2
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.0e-18 96.3 57 75.4
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 1.1e-17 95.1 145 31.7
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 3.4e-11 73.6 133 35.3
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 1.3e-10 71.6 45 80.0
Haze_14102 Corylus avellana HOM05D004071 ORTHO05D004501 1.1e-09 68.6 75 61.3
CBR_g42155 Chara braunii HOM05D004071 ORTHO05D004501 1.8e-07 61.2 142 29.6
Cre02.g099650 Chlamydomonas reinhardtii HOM05D004071 ORTHO05D004501 5.1e-07 59.7 165 25.5
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 7.4e-06 55.8 98 38.8


User provided reference genes

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