Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 4.0e-299 1030.8 569 100.0
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 2.4e-171 606.3 667 58.8
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 1.1e-155 554.3 663 56.1
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 1.2e-138 497.7 599 56.8
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 2.6e-133 479.9 574 55.9
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 6.7e-113 412.1 606 51.0
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 2.2e-95 354.0 570 47.0
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 3.7e-95 353.2 574 47.2
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 5.5e-91 339.3 578 45.8
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 7.2e-91 339.0 576 45.7
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 9.4e-91 338.6 571 44.0
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 1.0e-89 335.1 576 45.5
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 3.4e-88 330.1 581 46.0
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 2.4e-86 323.9 579 45.3
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 1.7e-84 317.8 564 44.5
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 2.1e-82 310.8 622 42.9
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 2.5e-75 287.3 588 42.2
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 2.5e-75 287.3 588 42.2
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 1.4e-73 281.6 568 41.0
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 5.2e-73 279.6 585 42.1
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 8.9e-73 278.9 568 40.8
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 7.5e-72 275.8 570 42.3
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 3.7e-71 273.5 569 39.2
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 4.4e-56 223.4 381 44.6
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 2.6e-48 197.6 181 61.3
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 5.8e-48 196.4 375 41.3
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 9.9e-48 195.7 578 33.4
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 1.4e-33 148.7 564 29.6
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 2.9e-31 141.0 557 27.6
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 3.8e-31 140.6 159 54.7
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 6.4e-31 139.8 576 29.9
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 1.4e-30 138.7 129 57.4
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 1.9e-30 138.3 570 31.1
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 5.4e-30 136.7 566 29.3
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 2.1e-29 134.8 205 42.0
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 2.7e-29 134.4 326 32.5
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 2.3e-28 131.3 155 48.4
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 2.3e-28 131.3 155 48.4
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 3.0e-28 131.0 121 54.5
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 5.1e-28 130.2 569 28.5
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 6.7e-28 129.8 298 32.6
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.5e-27 128.6 282 35.8
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 4.3e-27 127.1 564 29.8
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 4.3e-27 127.1 295 35.3
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 7.4e-27 126.3 116 60.3
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 1.3e-26 125.6 185 43.2
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 1.6e-26 125.2 135 51.1
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 1.6e-26 125.2 210 41.9
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 2.1e-26 124.8 232 38.4
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 3.7e-26 124.0 594 27.8
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 4.8e-26 123.6 153 48.4
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 4.8e-26 123.6 570 28.9
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 1.1e-25 122.5 237 41.8
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 2.4e-25 121.3 564 29.1
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 9.0e-25 119.4 205 41.5
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 1.2e-24 119.0 597 28.5
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 1.2e-24 119.0 160 46.9
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 1.5e-24 118.6 560 25.0
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 1.5e-24 118.6 566 27.7
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 2.0e-24 118.2 213 37.6
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 2.0e-24 118.2 102 57.8
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 4.5e-24 117.1 126 53.2
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 5.8e-24 116.7 125 52.8
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 9.9e-24 115.9 558 28.9
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 1.3e-23 115.5 189 41.3
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 1.7e-23 115.2 567 27.3
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 2.2e-23 114.8 125 52.8
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.9e-23 114.4 591 27.4
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 3.8e-23 114.0 212 38.2
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 4.9e-23 113.6 587 27.9
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 6.4e-23 113.2 128 47.7
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 6.4e-23 113.2 189 40.7
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 6.4e-23 113.2 123 50.4
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 1.1e-22 112.5 189 40.2
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 1.1e-22 112.5 165 41.2
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.4e-22 112.1 576 28.5
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 1.9e-22 111.7 175 41.7
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 1.9e-22 111.7 189 44.4
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 1.9e-22 111.7 209 36.8
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 3.2e-22 110.9 157 45.2
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 3.2e-22 110.9 564 26.8
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 5.5e-22 110.2 118 46.6
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 1.2e-21 109.0 131 42.7
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 1.2e-21 109.0 216 39.4
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 1.2e-21 109.0 216 39.4
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 1.2e-21 109.0 160 43.8
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 1.6e-21 108.6 242 38.4
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 2.1e-21 108.2 567 29.1
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 2.1e-21 108.2 157 45.2
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 3.5e-21 107.5 124 47.6
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 1.3e-20 105.5 444 30.0
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 1.3e-20 105.5 565 25.5
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 1.8e-20 105.1 211 36.5
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 2.3e-20 104.8 223 36.8
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 2.3e-20 104.8 204 40.2
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 3.0e-20 104.4 218 37.6
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 3.9e-20 104.0 209 39.7
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 6.7e-20 103.2 572 26.9
BolC6t35423H Brassica oleracea HOM05D010442 ORTHO05D010690 8.7e-20 102.8 115 52.2
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 1.1e-19 102.4 576 27.6
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 1.1e-19 102.4 566 30.4
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 1.9e-19 101.7 560 27.5
C06p03000 Brassica napus HOM05D010442 ORTHO05D010690 1.9e-19 101.7 118 52.5
BcaC08g43040 Brassica carinata HOM05D010442 ORTHO05D010690 2.5e-19 101.3 112 52.7
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 9.6e-19 99.4 127 44.9
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 9.6e-19 99.4 569 25.3
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 1.3e-18 99.0 579 27.6
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 1.3e-18 99.0 220 36.8
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 1.6e-18 98.6 215 34.0
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 2.8e-18 97.8 179 39.1
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 3.7e-18 97.4 558 27.1
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 6.2e-18 96.7 126 38.9
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 1.1e-17 95.9 564 27.1
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 1.4e-17 95.5 561 27.8
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 2.4e-17 94.7 566 27.9
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 4.0e-17 94.0 558 25.3
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 5.3e-17 93.6 206 33.5
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 6.9e-17 93.2 201 37.3
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 2.0e-16 91.7 578 24.9
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 2.6e-16 91.3 575 27.0
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 3.4e-16 90.9 598 26.6
A06p04460 Brassica napus HOM05D010442 ORTHO05D010690 4.5e-16 90.5 100 54.0
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 4.5e-16 90.5 563 27.5
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 7.6e-16 89.7 564 25.5
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 1.7e-15 88.6 559 25.9
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 2.9e-15 87.8 357 28.3
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 3.8e-15 87.4 563 26.6
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 3.8e-15 87.4 570 23.9
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 6.5e-15 86.7 561 27.6
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 1.1e-14 85.9 562 24.9
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 1.4e-14 85.5 575 24.9
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 1.4e-14 85.5 98 43.9
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 1.2e-13 82.4 561 25.5
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 6.0e-13 80.1 563 24.0
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 1.8e-12 78.6 575 28.2
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 6.7e-12 76.6 105 37.1
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 1.1e-11 75.9 110 37.3
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 1.8e-09 68.6 194 30.9
Pp3c18_4140 Physcomitrium patens HOM05D004833 ORTHO05D005671 1.8e-09 68.6 97 42.3
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 2.6e-08 64.7 49 55.1
SalBow5G1669 Salvia bowleyana HOM05D004938 ORTHO05D006035 2.6e-08 64.7 125 35.2
SalBow5G2418 Salvia bowleyana HOM05D004938 ORTHO05D006035 2.6e-08 64.7 125 35.2
Medtr3g092440 Medicago truncatula HOM05D004833 ORTHO05D005671 4.5e-08 63.9 128 39.8
PRCOL_00002026 Prasinoderma coloniale HOM05D004833 ORTHO05D005671 5.9e-08 63.5 125 33.6
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 1.3e-07 62.4 454 24.9
Mapoly0067s0089 Marchantia polymorpha HOM05D004833 ORTHO05D005671 1.7e-07 62.0 95 36.8
Potri.008G149700 Populus trichocarpa HOM05D004938 ORTHO05D006035 2.9e-07 61.2 122 33.6
Sabra10G0051800 Salix brachista HOM05D004938 ORTHO05D006035 2.9e-07 61.2 122 34.4
Glyma.01G239700 Glycine max HOM05D004938 ORTHO05D006035 3.8e-07 60.8 124 36.3
BcaC01g04549 Brassica carinata HOM05D004833 ORTHO05D005671 5.0e-07 60.5 61 55.7
Lj1g0006253 Lotus japonicus HOM05D004938 ORTHO05D006035 6.5e-07 60.1 124 36.3
Potri.010G091500 Populus trichocarpa HOM05D004938 ORTHO05D006035 6.5e-07 60.1 119 32.8
CiPaw.02G094500 Carya illinoinensis HOM05D004938 ORTHO05D006035 1.1e-06 59.3 122 33.6
Migut.N00168 Erythranthe guttata HOM05D004938 ORTHO05D006035 1.1e-06 59.3 125 34.4
Actinidia04469 Actinidia chinensis HOM05D004833 ORTHO05D005671 1.4e-06 58.9 41 63.4
arahy.Tifrunner.gnm1.ann1.AAS7XX Arachis hypogaea HOM05D004938 ORTHO05D006035 1.4e-06 58.9 122 36.1
arahy.Tifrunner.gnm1.ann1.CBXD69 Arachis hypogaea HOM05D004938 ORTHO05D006035 1.4e-06 58.9 122 36.1
CBR_g21751 Chara braunii HOM05D004833 ORTHO05D005671 1.4e-06 58.9 99 39.4
Psat4g211200 Pisum sativum HOM05D004938 ORTHO05D006035 1.4e-06 58.9 112 36.6
AagrBONN_evm.TU.Sc2ySwM_368.3218 Anthoceros agrestis HOM05D004833 ORTHO05D005671 1.9e-06 58.5 197 29.9
Duzib151G0907 Durio zibethinus HOM05D004938 ORTHO05D006035 1.9e-06 58.5 112 36.6
A10p20400 Brassica napus HOM05D004938 ORTHO05D006035 2.5e-06 58.2 124 34.7
ClCG06G005970 Citrullus lanatus HOM05D004938 ORTHO05D006035 3.2e-06 57.8 122 34.4
MELO3C014494.2 Cucumis melo HOM05D004938 ORTHO05D006035 3.2e-06 57.8 122 32.8
Manes.15G025800 Manihot esculenta HOM05D004938 ORTHO05D006035 3.2e-06 57.8 122 32.8
BcaB07g33758 Brassica carinata HOM05D010442 ORTHO05D010690 4.2e-06 57.4 114 36.8
Ca_24383_v3 Cicer arietinum L. HOM05D004938 ORTHO05D006035 4.2e-06 57.4 112 36.6
MD13G1186700 Malus domestica HOM05D004938 ORTHO05D006035 4.2e-06 57.4 122 33.6
MD16G1187600 Malus domestica HOM05D004938 ORTHO05D006035 4.2e-06 57.4 122 33.6
TPR.G38053 Trifolium pratense HOM05D004938 ORTHO05D006035 4.2e-06 57.4 126 34.9
A03p35320 Brassica napus HOM05D004938 ORTHO05D006035 5.5e-06 57.0 116 35.3
CiPaw.01G189200 Carya illinoinensis HOM05D004833 ORTHO05D005671 5.5e-06 57.0 152 35.5
GSVIVG01017919001 Vitis vinifera HOM05D004938 ORTHO05D006035 5.5e-06 57.0 122 32.8
Manes.03G181800 Manihot esculenta HOM05D004938 ORTHO05D006035 7.2e-06 56.6 122 31.1
Atru.chr4.2523 Acer truncatum HOM05D004938 ORTHO05D006035 9.4e-06 56.2 112 36.6
BcaB08g36589 Brassica carinata HOM05D004938 ORTHO05D006035 9.4e-06 56.2 124 34.7
Phvul.002G047600 Phaseolus vulgaris HOM05D004938 ORTHO05D006035 9.4e-06 56.2 122 33.6
SGA_v2.0_scaffold93G28322 Striga asiatica HOM05D004184 ORTHO05D004863 9.4e-06 56.2 48 54.2


User provided reference genes

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