Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR076010 Cardamine hirsuta HOM05D005960 ORTHO05D007537 2.3e-265 918.3 456 100.0
Thhalv10020707m.g Eutrema salsugineum HOM05D005960 ORTHO05D007537 4.0e-249 864.4 456 94.1
AL3G11200 Arabidopsis lyrata HOM05D005960 ORTHO05D007537 1.2e-248 862.8 456 93.6
AT3G01060 Arabidopsis thaliana HOM05D005960 ORTHO05D007537 2.6e-248 861.7 456 93.2
Carub.0003s0111 Capsella rubella HOM05D005960 ORTHO05D007537 1.7e-244 849.0 457 92.6
Sp3g01070 Schrenkiella parvula HOM05D005960 ORTHO05D007537 5.0e-244 847.4 456 92.1
BraA01t04634Z Brassica rapa HOM05D005960 ORTHO05D007537 1.6e-237 825.9 458 90.8
BNapus_Darmor_BZH_scaffold_113p00110 Brassica napus HOM05D005960 ORTHO05D007537 8.6e-236 820.1 458 90.2
Aa31LG5G12560 Aethionema arabicum HOM05D005960 ORTHO05D007537 1.6e-234 815.8 456 88.4
BNapus_Darmor_BZH_scaffold_97p00050 Brassica napus HOM05D005960 ORTHO05D007537 3.6e-234 814.7 457 89.3
BolC1t05923H Brassica oleracea HOM05D005960 ORTHO05D007537 1.4e-233 812.8 457 89.1
THA.LOC104802965 Tarenaya hassleriana HOM05D005960 ORTHO05D007537 5.8e-224 780.8 456 86.0
BcaC09g47681 Brassica carinata HOM05D005960 ORTHO05D007537 6.8e-217 757.3 457 84.2
Eucgr.I01985 Eucalyptus grandis HOM05D005960 ORTHO05D007537 1.1e-206 723.4 456 79.6
Manes.01G099100 Manihot esculenta HOM05D005960 ORTHO05D007537 4.6e-205 718.0 453 80.1
Atru.chr8.386 Acer truncatum HOM05D005960 ORTHO05D007537 6.0e-205 717.6 455 80.2
Cfa007624 Carpinus fangiana HOM05D005960 ORTHO05D007537 1.3e-204 716.5 456 80.0
HanXRQChr14g0448721 Helianthus annuus HOM05D005960 ORTHO05D007537 1.7e-204 716.1 458 79.5
PGR004G2687 Punica granatum HOM05D005960 ORTHO05D007537 3.0e-204 715.3 463 78.6
QL02p039732 Quercus lobata HOM05D005960 ORTHO05D007537 6.6e-204 714.1 456 79.4
Actinidia01975 Actinidia chinensis HOM05D005960 ORTHO05D007537 8.6e-204 713.8 458 79.0
CsaV3_5G038400 Cucumis sativus L. HOM05D005960 ORTHO05D007537 8.6e-204 713.8 452 78.8
Hma1.2p1_3044F.1_g332080 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 8.6e-204 713.8 451 80.0
QL02p039477 Quercus lobata HOM05D005960 ORTHO05D007537 8.6e-204 713.8 456 79.2
Cpa.g.sc14.144 Carica papaya HOM05D005960 ORTHO05D007537 2.5e-203 712.2 459 78.6
TWI60G0302 Tripterygium wilfordii HOM05D005960 ORTHO05D007537 3.3e-203 711.8 429 83.9
TAR371G0518 Trochodendron aralioides HOM05D005960 ORTHO05D007537 5.6e-203 711.1 455 78.9
CSS0005506 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 9.6e-203 710.3 454 79.3
GSVIVG01011490001 Vitis vinifera HOM05D005960 ORTHO05D007537 9.6e-203 710.3 455 79.1
CSS0003743 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 1.2e-202 709.9 454 79.3
RcHm_v2.0_Chr2g0166541 Rosa chinensis HOM05D005960 ORTHO05D007537 4.7e-202 708.0 457 78.6
COL.COLO4_21375 Corchorus olitorius HOM05D005960 ORTHO05D007537 6.2e-202 707.6 458 78.2
Potri.017G090100 Populus trichocarpa HOM05D005960 ORTHO05D007537 1.1e-201 706.8 455 78.0
MBI16_g15532_MAGBIO Magnolia biondii HOM05D005960 ORTHO05D007537 1.4e-201 706.4 457 78.1
ClCG11G004630 Citrullus lanatus HOM05D005960 ORTHO05D007537 2.4e-201 705.7 453 78.1
vmacro05665 Vaccinium macrocarpon HOM05D005960 ORTHO05D007537 2.4e-201 705.7 454 77.3
FAN05G2671 Fragaria x ananassa HOM05D005960 ORTHO05D007537 4.0e-201 704.9 457 78.1
Rhsim10G0047200 Rhododendron simsii HOM05D005960 ORTHO05D007537 5.2e-201 704.5 475 76.0
MELO3C022021.2 Cucumis melo HOM05D005960 ORTHO05D007537 6.9e-201 704.1 452 77.7
FvH4_6g47510 Fragaria vesca HOM05D005960 ORTHO05D007537 6.9e-201 704.1 455 78.2
Thecc.04G090800 Theobroma cacao HOM05D005960 ORTHO05D007537 6.9e-201 704.1 456 78.1
MD17G1056600 Malus domestica HOM05D005960 ORTHO05D007537 8.9e-201 703.7 457 78.6
Gorai.007G081300 Gossypium raimondii HOM05D005960 ORTHO05D007537 3.4e-200 701.8 454 78.9
CiPaw.04G058500 Carya illinoinensis HOM05D005960 ORTHO05D007537 4.4e-200 701.4 445 78.9
Gohir.A11G071600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 4.4e-200 701.4 454 78.6
Sabra17G0079200 Salix brachista HOM05D005960 ORTHO05D007537 7.6e-200 700.7 474 75.7
Lj2g0023614 Lotus japonicus HOM05D005960 ORTHO05D007537 1.3e-199 699.9 455 77.8
Duzib147G1008 Durio zibethinus HOM05D005960 ORTHO05D007537 2.2e-199 699.1 455 77.1
Rhsim10G0046600 Rhododendron simsii HOM05D005960 ORTHO05D007537 3.8e-199 698.4 477 75.1
AUR62042562 Chenopodium quinoa HOM05D005960 ORTHO05D007537 1.4e-198 696.4 436 80.0
EL10Ac2g03055 Beta vulgaris HOM05D005960 ORTHO05D007537 1.9e-198 696.0 429 81.4
Ciclev10011697m.g Citrus clementina HOM05D005960 ORTHO05D007537 2.4e-198 695.7 454 78.4
CANSAT64G2728 Cannabis sativa HOM05D005960 ORTHO05D007537 4.2e-198 694.9 456 77.6
Glyma.19G027400 Glycine max HOM05D005960 ORTHO05D007537 4.2e-198 694.9 456 78.1
Aqoxy3G00406 Aquilegia oxysepala HOM05D005960 ORTHO05D007537 5.4e-198 694.5 455 77.4
DCAR_005553 Daucus carota HOM05D005960 ORTHO05D007537 9.3e-198 693.7 433 80.8
ECA238G1943 Erigeron canadensis HOM05D005960 ORTHO05D007537 7.8e-197 690.6 461 76.8
Oeu000854.1 Olea europaea HOM05D005960 ORTHO05D007537 7.8e-197 690.6 470 75.7
CAN.G734.6 Capsicum annuum HOM05D005960 ORTHO05D007537 1.3e-196 689.9 404 83.4
Ca_04868_v3 Cicer arietinum L. HOM05D005960 ORTHO05D007537 1.3e-196 689.9 456 77.0
Solyc03g013240.4 Solanum lycopersicum HOM05D005960 ORTHO05D007537 2.3e-196 689.1 407 82.3
VMungo0464G0831 Vigna mungo HOM05D005960 ORTHO05D007537 2.3e-196 689.1 454 77.3
Sed0006667 Sechium edule HOM05D005960 ORTHO05D007537 3.0e-196 688.7 456 77.2
Glyma.13G059000 Glycine max HOM05D005960 ORTHO05D007537 5.1e-196 688.0 456 76.8
Sopen03g016610 Solanum pennellii HOM05D005960 ORTHO05D007537 6.6e-196 687.6 407 82.3
arahy.Tifrunner.gnm1.ann1.8N3EDT Arachis hypogaea HOM05D005960 ORTHO05D007537 1.1e-195 686.8 462 75.8
Phvul.004G033300 Phaseolus vulgaris HOM05D005960 ORTHO05D007537 2.5e-195 685.6 455 77.1
Psat1g068640 Pisum sativum HOM05D005960 ORTHO05D007537 4.3e-195 684.9 454 76.2
TPR.G26197 Trifolium pratense HOM05D005960 ORTHO05D007537 4.3e-195 684.9 456 76.8
arahy.Tifrunner.gnm1.ann1.7U9LX7 Arachis hypogaea HOM05D005960 ORTHO05D007537 1.3e-194 683.3 462 75.5
PSO421G0059 Papaver somniferum HOM05D005960 ORTHO05D007537 1.6e-194 682.9 451 74.3
PSO013G0364 Papaver somniferum HOM05D005960 ORTHO05D007537 1.1e-193 680.2 455 73.8
Migut.H00653 Erythranthe guttata HOM05D005960 ORTHO05D007537 1.8e-193 679.5 460 75.4
Medtr6g013750 Medicago truncatula HOM05D005960 ORTHO05D007537 3.1e-193 678.7 454 76.0
Haze_14472 Corylus avellana HOM05D005960 ORTHO05D007537 1.5e-192 676.4 522 69.5
Os05g0512200 Oryza sativa ssp. japonica HOM05D005960 ORTHO05D007537 2.9e-191 672.2 402 82.1
Lalb_Chr06g0175111 Lupinus albus HOM05D005960 ORTHO05D007537 3.2e-190 668.7 435 77.2
Nn4g23343 Nelumbo nucifera HOM05D005960 ORTHO05D007537 5.1e-188 661.4 361 88.6
SalBow1G6551 Salvia bowleyana HOM05D005960 ORTHO05D007537 1.1e-187 660.2 396 83.1
unitig_736.g22244 Utricularia gibba HOM05D005960 ORTHO05D007537 3.7e-186 655.2 408 79.7
Lsat_1_v5_gn_2_87860 Lactuca sativa HOM05D005960 ORTHO05D007537 4.8e-186 654.8 461 73.5
ATR0111G015 Amborella trichopoda HOM05D005960 ORTHO05D007537 3.4e-184 648.7 445 73.3
Peaxi162Scf00451g00429 Petunia axillaris HOM05D005960 ORTHO05D007537 4.9e-183 644.8 404 80.2
FAN02G1813 Fragaria x ananassa HOM05D005960 ORTHO05D007537 3.2e-182 642.1 356 88.2
Nitab4.5_0001637g0110 Nicotiana tabacum HOM05D005960 ORTHO05D007537 1.8e-180 636.3 466 71.0
Sc10g0003290 Simmondsia chinensis HOM05D005960 ORTHO05D007537 3.9e-180 635.2 369 83.2
Lj4C116G4 Lonicera japonica HOM05D005960 ORTHO05D007537 2.8e-178 629.0 465 71.2
FAN14G4646 Fragaria x ananassa HOM05D005960 ORTHO05D007537 1.3e-175 620.2 455 71.2
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 3.0e-172 609.0 451 72.3
SEGI_05647 Sequoiadendron giganteum HOM05D005960 ORTHO05D007537 8.7e-172 607.4 414 70.0
Prupe.3G258900 Prunus persica HOM05D005960 ORTHO05D007537 1.3e-170 603.6 331 89.7
Gohir.D11G075600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 2.2e-167 592.8 331 87.9
Mapoly0015s0039 Marchantia polymorpha HOM05D005960 ORTHO05D007537 5.7e-163 578.2 415 68.2
Pp3c2_13280 Physcomitrium patens HOM05D005960 ORTHO05D007537 5.3e-161 571.6 383 71.3
SMO335G0027 Selaginella moellendorffii HOM05D005960 ORTHO05D007537 5.9e-160 568.2 433 65.6
Actinidia01967 Actinidia chinensis HOM05D005960 ORTHO05D007537 3.0e-156 555.8 383 75.2
AagrBONN_evm.TU.Sc2ySwM_362.2259 Anthoceros agrestis HOM05D005960 ORTHO05D007537 1.5e-152 543.5 393 66.9
Nitab4.5_0005196g0010 Nicotiana tabacum HOM05D005960 ORTHO05D007537 4.5e-152 542.0 464 63.4
Cc07_g03890 Coffea canephora HOM05D005960 ORTHO05D007537 7.2e-150 534.6 350 78.6
AUR62018147 Chenopodium quinoa HOM05D005960 ORTHO05D007537 4.4e-147 525.4 362 74.0
Zm00001eb292620 Zea mays HOM05D005960 ORTHO05D007537 1.7e-143 513.5 356 74.4
MSTRG.3021 Avicennia marina HOM05D005960 ORTHO05D007537 4.1e-137 492.3 278 86.3
CBR_g61504 Chara braunii HOM05D005960 ORTHO05D007537 5.9e-136 488.4 404 61.4
HPP92_018459 Vanilla planifolia HOM05D005960 ORTHO05D007537 1.0e-135 487.6 337 73.3
Dinv11487 Davidia involucrata HOM05D005960 ORTHO05D007537 6.1e-125 451.8 317 73.5
CDE04G1831 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 2.6e-123 446.4 390 61.8
CDE07G2056 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 2.2e-122 443.4 293 73.7
Hma1.2p1_1813F.1_g303790 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 1.4e-121 440.7 235 88.5
Hma1.2p1_3044F.1_g332082 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 1.4e-121 440.7 235 88.5
FAN09G3416 Fragaria x ananassa HOM05D005960 ORTHO05D007537 9.2e-121 438.0 410 58.5
TAR627G0454 Trochodendron aralioides HOM05D005960 ORTHO05D007537 1.0e-119 434.5 331 68.3
Cre13.g562750 Chlamydomonas reinhardtii HOM05D005960 ORTHO05D007537 7.3e-110 401.7 412 49.3
MD09G1061300 Malus domestica HOM05D005960 ORTHO05D007537 8.7e-87 325.1 242 71.5
MCO03G230 Micromonas commoda HOM05D005960 ORTHO05D007537 1.5e-75 287.7 320 46.6
MCO05G128 Micromonas commoda HOM05D005960 ORTHO05D007537 4.3e-62 243.0 360 40.0
PRCOL_00002980 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 8.4e-58 228.8 401 36.2
PRCOL_00004151 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 9.0e-52 208.8 380 36.8
CDE07G0145 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 1.2e-48 198.4 117 82.9
PRCOL_00003347 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 2.7e-48 197.2 346 34.4
MCO08G069 Micromonas commoda HOM05D005960 ORTHO05D007537 2.5e-46 190.7 349 34.4
Cc07_g03900 Coffea canephora HOM05D005960 ORTHO05D007537 6.3e-45 186.0 104 85.6
MCO08G121 Micromonas commoda HOM05D005960 ORTHO05D007537 7.7e-43 179.1 360 31.7
AUR62018149 Chenopodium quinoa HOM05D005960 ORTHO05D007537 3.2e-41 173.7 99 84.8
TPR.G22619 Trifolium pratense HOM05D005960 ORTHO05D007537 1.1e-36 158.7 152 59.9
Potri.004G125301 Populus trichocarpa HOM05D005960 ORTHO05D007537 1.4e-36 158.3 149 56.4
EL10Ac2g03064 Beta vulgaris HOM05D005960 ORTHO05D007537 2.2e-34 151.0 96 81.2
Oeu061493.1 Olea europaea HOM05D005960 ORTHO05D007537 1.8e-20 104.8 51 88.2
PGSC0003DMG400033541 Solanum tuberosum HOM05D005960 ORTHO05D007537 3.0e-15 87.4 45 100.0
MCO08G023 Micromonas commoda HOM05D005960 ORTHO05D270145 4.7e-08 63.5 160 27.5
Zm00001eb030310 Zea mays HOM05D005960 ORTHO05D051632 4.7e-08 63.5 38 84.2
Zm00001eb250570 Zea mays HOM05D005960 ORTHO05D051632 8.0e-08 62.8 42 76.2


User provided reference genes

Program Settings