Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 3.0e-272 941.8 698 100.0
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 9.2e-197 691.0 718 70.6
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 2.1e-188 663.3 731 68.4
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 6.8e-184 648.3 725 74.5
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 4.4e-167 592.4 751 65.5
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 1.7e-163 580.5 724 62.6
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 7.6e-159 565.1 716 66.3
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 7.9e-148 528.5 718 61.1
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 5.7e-146 522.3 724 61.5
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 1.3e-145 521.2 698 62.5
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 1.3e-142 511.1 706 63.6
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 8.4e-142 508.4 699 62.4
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 2.2e-134 483.8 730 58.8
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 3.8e-126 456.4 719 51.5
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 3.8e-126 456.4 719 51.5
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 2.6e-122 443.7 681 48.0
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 4.1e-120 436.4 744 46.5
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 7.0e-120 435.6 748 52.9
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 2.6e-119 433.7 709 46.7
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 3.8e-118 429.9 725 52.3
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 3.2e-117 426.8 708 55.8
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 5.5e-117 426.0 701 44.5
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 3.6e-116 423.3 685 52.1
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 6.1e-116 422.5 696 48.0
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 1.0e-115 421.8 691 47.6
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 1.4e-115 421.4 697 46.2
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 2.3e-115 420.6 704 51.3
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 6.7e-115 419.1 739 48.0
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 5.7e-114 416.0 715 47.8
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 2.8e-113 413.7 731 55.0
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 6.3e-113 412.5 699 43.5
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 6.3e-113 412.5 662 46.5
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 1.1e-112 411.8 728 47.4
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 1.8e-112 411.0 708 43.8
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 1.8e-112 411.0 703 46.7
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 4.1e-112 409.8 695 46.2
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 5.3e-112 409.5 718 48.9
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 9.1e-112 408.7 726 50.1
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 1.6e-111 407.9 706 45.5
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 2.0e-111 407.5 727 51.3
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 2.0e-111 407.5 724 52.6
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 2.0e-111 407.5 667 53.7
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 3.5e-111 406.8 756 48.5
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 7.7e-111 405.6 746 52.0
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 1.0e-110 405.2 667 50.4
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 1.3e-110 404.8 667 52.8
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 1.7e-110 404.4 734 52.6
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 2.9e-110 403.7 703 45.1
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 5.0e-110 402.9 665 53.5
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 8.5e-110 402.1 655 55.4
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 1.1e-109 401.7 708 48.6
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 1.5e-109 401.4 692 51.7
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.5e-109 401.4 730 47.9
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 1.9e-109 401.0 727 52.4
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 5.5e-109 399.4 723 54.8
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 5.5e-109 399.4 709 51.5
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 5.5e-109 399.4 726 48.2
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 9.4e-109 398.7 715 51.2
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 9.4e-109 398.7 721 54.6
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 2.1e-108 397.5 764 48.3
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 3.6e-108 396.7 683 47.7
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 4.7e-108 396.4 770 50.8
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 1.0e-107 395.2 726 47.0
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 1.4e-107 394.8 695 50.6
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 8.8e-107 392.1 762 49.2
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 5.7e-106 389.4 689 51.2
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 7.5e-106 389.0 736 52.0
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 1.3e-105 388.3 705 48.7
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 1.4e-104 384.8 703 45.4
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 2.4e-104 384.0 715 49.7
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 9.1e-104 382.1 736 49.7
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 3.5e-103 380.2 502 50.0
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 4.5e-103 379.8 739 47.6
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 5.9e-103 379.4 709 47.4
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 1.0e-102 378.6 729 44.7
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 1.3e-102 378.3 721 47.0
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 2.9e-102 377.1 700 52.1
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 8.5e-102 375.6 522 48.5
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 3.6e-100 370.2 720 46.0
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 4.7e-100 369.8 690 49.3
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 1.8e-99 367.9 748 43.3
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 3.0e-99 367.1 521 56.4
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 4.4e-98 363.2 650 45.2
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 3.6e-92 343.6 741 43.0
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 3.6e-92 343.6 482 49.6
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 4.7e-92 343.2 697 43.8
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 6.8e-91 339.3 735 41.2
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 2.2e-89 334.3 507 44.2
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 8.3e-89 332.4 765 42.4
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 4.1e-88 330.1 506 46.2
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 2.0e-87 327.8 676 45.6
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 1.0e-86 325.5 296 56.8
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 1.5e-85 321.6 536 44.6
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 3.6e-84 317.0 518 50.6
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 4.0e-83 313.5 720 45.3
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 1.7e-81 308.1 725 42.5
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 2.4e-80 304.3 716 43.6
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 4.6e-79 300.1 685 48.2
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 1.1e-77 295.4 625 39.8
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 9.5e-77 292.4 623 40.9
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 1.4e-75 288.5 707 43.8
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 1.8e-75 288.1 399 54.6
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 2.6e-74 284.3 615 41.5
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 2.7e-71 274.2 723 42.9
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 9.5e-69 265.8 435 48.3
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 3.0e-62 244.2 204 61.3
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 2.5e-61 241.1 539 38.8
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 2.4e-56 224.6 341 58.7
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 3.5e-55 220.7 198 57.6
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 4.8e-52 210.3 561 32.3
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 9.0e-51 206.1 464 38.1
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 8.4e-49 199.5 198 49.5
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 7.1e-48 196.4 398 45.0
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 3.1e-43 181.0 217 51.2
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 4.2e-40 170.6 447 36.7
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 7.1e-40 169.9 332 40.7
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 2.6e-34 151.4 202 44.1
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 1.4e-32 145.6 231 41.6
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 3.2e-32 144.4 296 40.9
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 6.7e-30 136.7 117 63.2
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 3.7e-28 131.0 143 56.6
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 4.1e-27 127.5 517 28.0
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 3.9e-22 110.9 267 38.6
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 3.7e-20 104.4 99 49.5
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 3.1e-19 101.3 266 49.2
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 1.7e-17 95.5 258 39.1
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 2.2e-17 95.1 265 44.9
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 8.5e-17 93.2 153 41.2
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 9.4e-16 89.7 246 34.6
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 1.2e-15 89.4 58 69.0
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 6.1e-15 87.0 58 65.5
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 7.9e-15 86.7 117 49.6
BraA03t12436Z Brassica rapa HOM05D004723 ORTHO05D019910 1.4e-14 85.9 126 47.6
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 1.4e-14 85.9 85 55.3
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 3.0e-14 84.7 60 66.7
TPR.G29970 Trifolium pratense HOM05D004723 ORTHO05D006176 3.0e-14 84.7 73 56.2
BcaC01g04505 Brassica carinata HOM05D004723 ORTHO05D019910 3.9e-14 84.3 126 46.8
Lsat_1_v5_gn_5_164041 Lactuca sativa HOM05D004723 ORTHO05D006176 1.1e-13 82.8 108 45.4
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 1.5e-13 82.4 115 51.3
GSVIVG01005388001 Vitis vinifera HOM05D004723 ORTHO05D006176 4.4e-13 80.9 80 51.2
GSVIVG01005594001 Vitis vinifera HOM05D004723 ORTHO05D006176 4.8e-12 77.4 98 44.9
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 3.1e-11 74.7 280 35.4
C03p39780 Brassica napus HOM05D004723 ORTHO05D019910 1.7e-09 68.9 92 50.0
BolC3t16251H Brassica oleracea HOM05D004723 ORTHO05D019910 2.2e-09 68.6 69 59.4
COL.COLO4_33622 Corchorus olitorius HOM05D004723 ORTHO05D006176 8.5e-09 66.6 113 38.9
C03p39890 Brassica napus HOM05D004723 ORTHO05D019910 2.5e-08 65.1 69 58.0
Thecc.01G154900 Theobroma cacao HOM05D004723 ORTHO05D006176 2.5e-08 65.1 100 41.0
SEGI_25425 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 1.6e-07 62.4 75 48.0
C03p39770 Brassica napus HOM05D059891 ORTHO05D040930 6.1e-07 60.5 69 50.7
TPR.G21433 Trifolium pratense HOM05D004723 ORTHO05D006176 1.0e-06 59.7 101 44.6
Nn1g05556 Nelumbo nucifera HOM05D004723 ORTHO05D006176 1.8e-06 58.9 48 52.1
FAN22G1655 Fragaria x ananassa HOM05D002244 ORTHO05D035452 3.9e-06 57.8 54 48.1


User provided reference genes

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