Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR075600 Cardamine hirsuta HOM05D005389 ORTHO05D008484 0.0e+00 1347.8 697 100.0
AL3G10820 Arabidopsis lyrata HOM05D005389 ORTHO05D008484 0.0e+00 1291.6 695 95.7
AT3G01380 Arabidopsis thaliana HOM05D005389 ORTHO05D008484 0.0e+00 1286.6 695 95.0
Carub.0003s0071 Capsella rubella HOM05D005389 ORTHO05D008484 0.0e+00 1279.2 695 95.1
Thhalv10022528m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 0.0e+00 1261.1 695 93.4
C09p75190 Brassica napus HOM05D005389 ORTHO05D008484 0.0e+00 1260.4 695 93.4
BcaC05g30466 Brassica carinata HOM05D005389 ORTHO05D008484 0.0e+00 1258.8 695 93.2
BolC5t35145H Brassica oleracea HOM05D005389 ORTHO05D008484 0.0e+00 1258.8 695 93.1
A05p44600 Brassica napus HOM05D005389 ORTHO05D008484 0.0e+00 1252.7 695 92.9
BraA05t23196Z Brassica rapa HOM05D005389 ORTHO05D008484 0.0e+00 1252.7 695 92.9
Sp3g00690 Schrenkiella parvula HOM05D005389 ORTHO05D008484 0.0e+00 1250.3 695 93.2
Aa31LG5G10500 Aethionema arabicum HOM05D005389 ORTHO05D008484 0.0e+00 1160.6 740 83.9
THA.LOC104821073 Tarenaya hassleriana HOM05D005389 ORTHO05D008484 0.0e+00 1156.7 695 84.6
BcaNung07363 Brassica carinata HOM05D005389 ORTHO05D008484 0.0e+00 1105.9 631 92.2
Thhalv10020372m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 8.3e-299 1030.0 579 93.1
Duzib264G0565 Durio zibethinus HOM05D005389 ORTHO05D008484 2.7e-289 998.4 684 73.5
Thecc.04G003900 Theobroma cacao HOM05D005389 ORTHO05D008484 9.9e-284 979.9 686 72.6
Gohir.A07G218100 Gossypium hirsutum HOM05D005389 ORTHO05D008484 7.3e-279 963.8 683 71.3
Gorai.001G259600 Gossypium raimondii HOM05D005389 ORTHO05D008484 7.3e-279 963.8 683 71.4
Gohir.D07G225200 Gossypium hirsutum HOM05D005389 ORTHO05D008484 2.1e-278 962.2 683 71.3
QL02p077913 Quercus lobata HOM05D005389 ORTHO05D008484 2.1e-278 962.2 681 71.7
GSVIVG01032529001 Vitis vinifera HOM05D005389 ORTHO05D008484 2.4e-277 958.7 688 71.7
CiPaw.03G035000 Carya illinoinensis HOM05D005389 ORTHO05D008484 5.3e-277 957.6 681 72.4
COL.COLO4_06141 Corchorus olitorius HOM05D005389 ORTHO05D008484 5.3e-277 957.6 666 72.4
Cfa007465 Carpinus fangiana HOM05D005389 ORTHO05D008484 1.2e-276 956.4 680 72.2
Manes.17G118300 Manihot esculenta HOM05D005389 ORTHO05D008484 1.5e-276 956.1 683 71.9
Sabra16G0230200 Salix brachista HOM05D005389 ORTHO05D008484 2.3e-272 942.2 688 70.6
Ciclev10010988m.g Citrus clementina HOM05D005389 ORTHO05D008484 1.5e-271 939.5 695 69.6
Eucgr.I01836 Eucalyptus grandis HOM05D005389 ORTHO05D008484 8.1e-270 933.7 683 69.0
FvH4_6g50180 Fragaria vesca HOM05D005389 ORTHO05D008484 1.8e-269 932.6 686 70.7
Glyma.01G077400 Glycine max HOM05D005389 ORTHO05D008484 3.1e-269 931.8 680 70.7
Potri.001G350700 Populus trichocarpa HOM05D005389 ORTHO05D008484 3.1e-269 931.8 688 69.9
PGR142G1957 Punica granatum HOM05D005389 ORTHO05D008484 1.3e-267 926.4 682 68.3
TAR374G1603 Trochodendron aralioides HOM05D005389 ORTHO05D008484 2.4e-266 922.2 690 69.7
arahy.Tifrunner.gnm1.ann1.T59QJ9 Arachis hypogaea HOM05D005389 ORTHO05D008484 3.2e-266 921.8 688 68.5
Lj1g0011358 Lotus japonicus HOM05D005389 ORTHO05D008484 3.2e-266 921.8 680 70.1
arahy.Tifrunner.gnm1.ann1.D3X87A Arachis hypogaea HOM05D005389 ORTHO05D008484 5.5e-266 921.0 688 68.5
RcHm_v2.0_Chr2g0170441 Rosa chinensis HOM05D005389 ORTHO05D008484 9.3e-266 920.2 692 69.2
Phvul.008G153100 Phaseolus vulgaris HOM05D005389 ORTHO05D008484 6.0e-265 917.5 692 68.9
Medtr7g030060 Medicago truncatula HOM05D005389 ORTHO05D008484 7.9e-265 917.1 681 69.0
Medtr7g038700 Medicago truncatula HOM05D005389 ORTHO05D008484 7.9e-265 917.1 681 69.0
Hma1.2p1_0697F.1_g204985 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 1.8e-264 916.0 681 69.3
TWI36G1051 Tripterygium wilfordii HOM05D005389 ORTHO05D008484 1.8e-264 916.0 689 69.2
Sc06g0002580 Simmondsia chinensis HOM05D005389 ORTHO05D008484 1.9e-263 912.5 689 68.2
Prupe.3G279400 Prunus persica HOM05D005389 ORTHO05D008484 3.3e-263 911.8 688 68.6
vmacro05794 Vaccinium macrocarpon HOM05D005389 ORTHO05D008484 5.6e-263 911.0 683 69.3
Lalb_Chr21g0316351 Lupinus albus HOM05D005389 ORTHO05D008484 1.2e-260 903.3 681 69.3
MBI14_g02685_MAGBIO Magnolia biondii HOM05D005389 ORTHO05D008484 1.2e-260 903.3 683 68.2
MD17G1039500 Malus domestica HOM05D005389 ORTHO05D008484 3.4e-260 901.7 689 68.8
Psat3g165760 Pisum sativum HOM05D005389 ORTHO05D008484 1.3e-259 899.8 681 68.4
MD09G1038400 Malus domestica HOM05D005389 ORTHO05D008484 4.6e-257 891.3 689 68.4
Haze_14630 Corylus avellana HOM05D005389 ORTHO05D008484 5.1e-256 887.9 691 67.9
Aqoxy3G00899 Aquilegia oxysepala HOM05D005389 ORTHO05D008484 5.7e-255 884.4 695 66.8
Nn4g22901 Nelumbo nucifera HOM05D005389 ORTHO05D008484 1.8e-253 879.4 683 67.3
Ah.16g106960 Amaranthus hybridus HOM05D005389 ORTHO05D008484 4.1e-253 878.2 695 66.9
DCAR_013961 Daucus carota HOM05D005389 ORTHO05D008484 4.5e-252 874.8 683 67.6
Lju41A31T33 Lonicera japonica HOM05D005389 ORTHO05D008484 8.4e-251 870.5 687 66.7
PSO161G0132 Papaver somniferum HOM05D005389 ORTHO05D008484 5.5e-250 867.8 682 66.4
CSS0036605 Camellia sinensis var. sinensis HOM05D005389 ORTHO05D008484 1.6e-249 866.3 681 67.8
Lsat_1_v5_gn_4_181101 Lactuca sativa HOM05D005389 ORTHO05D008484 1.3e-248 863.2 684 65.6
Nitab4.5_0005206g0050 Nicotiana tabacum HOM05D005389 ORTHO05D008484 3.9e-248 861.7 684 64.8
PSO478G0736 Papaver somniferum HOM05D005389 ORTHO05D008484 5.1e-248 861.3 682 66.3
FAN05G2940 Fragaria x ananassa HOM05D005389 ORTHO05D008484 1.6e-246 856.3 686 65.9
FAN14G3523 Fragaria x ananassa HOM05D005389 ORTHO05D008484 3.7e-246 855.1 686 65.7
HanXRQChr09g0265861 Helianthus annuus HOM05D005389 ORTHO05D008484 6.3e-246 854.4 685 65.3
Cc07_g02570 Coffea canephora HOM05D005389 ORTHO05D008484 6.9e-245 850.9 681 64.3
Migut.H00153 Erythranthe guttata HOM05D005389 ORTHO05D008484 4.5e-244 848.2 685 64.1
Sopen02g031910 Solanum pennellii HOM05D005389 ORTHO05D008484 5.9e-244 847.8 683 64.4
SalBow1G5751 Salvia bowleyana HOM05D005389 ORTHO05D008484 7.7e-244 847.4 683 63.3
Ca_19612_v3 Cicer arietinum L. HOM05D005389 ORTHO05D008484 3.8e-243 845.1 639 68.2
SGA_v2.0_scaffold135G34838 Striga asiatica HOM05D005389 ORTHO05D008484 8.5e-243 844.0 684 63.0
Actinidia36063 Actinidia chinensis HOM05D005389 ORTHO05D008484 1.1e-242 843.6 649 67.2
Solyc02g087170.4 Solanum lycopersicum HOM05D005389 ORTHO05D008484 1.4e-242 843.2 682 63.9
CAN.G206.54 Capsicum annuum HOM05D005389 ORTHO05D008484 7.2e-242 840.9 683 64.3
PGSC0003DMG400000509 Solanum tuberosum HOM05D005389 ORTHO05D008484 9.4e-242 840.5 683 63.7
unitig_21.g20503 Utricularia gibba HOM05D005389 ORTHO05D008484 2.0e-236 822.8 693 62.6
ECA232G1242 Erigeron canadensis HOM05D005389 ORTHO05D008484 5.2e-232 808.1 697 62.3
FAN02G4477 Fragaria x ananassa HOM05D005389 ORTHO05D008484 4.1e-229 798.5 686 63.0
FAN09G2300 Fragaria x ananassa HOM05D005389 ORTHO05D008484 5.3e-229 798.1 686 63.0
ATR0800G105 Amborella trichopoda HOM05D005389 ORTHO05D008484 1.6e-228 796.6 684 61.4
Hund19981 Selenicereus undatus HOM05D005389 ORTHO05D008484 1.6e-225 786.6 758 55.9
C07p01310 Brassica napus HOM05D005389 ORTHO05D008484 9.1e-213 744.2 418 89.2
AUR62037862 Chenopodium quinoa HOM05D005389 ORTHO05D008484 3.8e-211 738.8 639 61.5
Prupe.2G019300 Prunus persica HOM05D005389 ORTHO05D008484 7.2e-210 734.6 682 59.5
Dinv35027 Davidia involucrata HOM05D005389 ORTHO05D008484 5.2e-200 701.8 596 62.2
TPR.G39126 Trifolium pratense HOM05D005389 ORTHO05D008484 8.3e-198 694.5 561 64.0
Rhsim10G0027600 Rhododendron simsii HOM05D005389 ORTHO05D008484 4.1e-197 692.2 605 62.1
Zm00001eb245310 Zea mays HOM05D005389 ORTHO05D008484 5.0e-195 685.3 618 58.3
Pp3c17_22750 Physcomitrium patens HOM05D005389 ORTHO05D008484 8.9e-192 674.5 705 50.6
Mapoly0007s0201 Marchantia polymorpha HOM05D005389 ORTHO05D008484 1.3e-190 670.6 683 51.1
Nitab4.5_0001952g0170 Nicotiana tabacum HOM05D005389 ORTHO05D008484 4.7e-185 652.1 566 58.8
AUR62032098 Chenopodium quinoa HOM05D005389 ORTHO05D008484 3.4e-183 646.0 656 55.3
AagrBONN_evm.TU.Sc2ySwM_368.926 Anthoceros agrestis HOM05D005389 ORTHO05D008484 2.6e-175 619.8 642 51.9
VMungo1383G0108 Vigna mungo HOM05D005389 ORTHO05D008484 3.3e-170 602.8 454 66.3
SMO244G0055 Selaginella moellendorffii HOM05D005389 ORTHO05D008484 2.4e-160 570.1 697 47.8
Peaxi162Scf00129g00824 Petunia axillaris HOM05D005389 ORTHO05D008484 1.2e-132 478.0 557 47.6
RcHm_v2.0_Chr7g0219571 Rosa chinensis HOM05D005389 ORTHO05D008484 6.5e-126 455.7 359 64.1
SEGI_27782 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 1.7e-113 414.5 417 56.1
Os02g0581000 Oryza sativa ssp. japonica HOM05D005389 ORTHO05D008484 3.7e-97 360.1 311 58.5
CDE04G3020 Ceratophyllum demersum HOM05D005389 ORTHO05D008484 1.7e-86 324.7 688 34.6
RcHm_v2.0_Chr7g0219561 Rosa chinensis HOM05D005389 ORTHO05D008484 1.5e-82 311.6 242 70.7
HPP92_017062 Vanilla planifolia HOM05D005389 ORTHO05D008484 5.6e-77 293.1 210 68.6
Cfa024795 Carpinus fangiana HOM05D005389 ORTHO05D008484 1.6e-71 275.0 710 30.6
SEGI_37358 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 1.9e-69 268.1 208 62.0
Cpa.g.sc14.89 Carica papaya HOM05D005389 ORTHO05D008484 2.3e-67 261.2 347 45.0
MCO14G282 Micromonas commoda HOM05D005389 ORTHO05D008484 2.6e-58 231.1 706 29.2
TPR.G17640 Trifolium pratense HOM05D005389 ORTHO05D008484 7.3e-53 213.0 125 89.6
Peaxi162Scf00129g00823 Petunia axillaris HOM05D005389 ORTHO05D008484 4.7e-52 210.3 132 83.3
Atru.chr8.2421 Acer truncatum HOM05D005389 ORTHO05D008484 1.9e-40 171.8 99 75.8
RcHm_v2.0_Chr7g0219531 Rosa chinensis HOM05D005389 ORTHO05D008484 1.8e-30 138.7 139 60.4
Actinidia13460 Actinidia chinensis HOM05D001853 ORTHO05D001908 4.5e-18 97.4 146 44.5
RcHm_v2.0_Chr7g0219551 Rosa chinensis HOM05D005389 ORTHO05D008484 1.7e-12 79.0 57 73.7
Actinidia13461 Actinidia chinensis HOM05D005389 ORTHO05D008484 8.2e-12 76.6 74 48.6
Gohir.D08G122632 Gossypium hirsutum HOM05D005389 ORTHO05D048184 2.9e-09 68.2 69 52.2
Gorai.001G214100 Gossypium raimondii HOM05D005389 ORTHO05D048184 3.8e-09 67.8 69 52.2
Pp3c17_5950 Physcomitrium patens HOM05D005389 ORTHO05D316153 9.4e-08 63.2 56 55.4
Gorai.010G120100 Gossypium raimondii HOM05D005389 ORTHO05D047357 2.1e-07 62.0 58 50.0
Thhalv10021056m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 1.4e-06 59.3 28 89.3


User provided reference genes

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