Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 5.1e-60 234.2 116 100.0
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 1.8e-57 225.7 116 94.8
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 3.1e-57 224.9 114 95.6
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 1.2e-56 223.0 116 94.0
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 1.2e-56 223.0 116 92.2
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 7.6e-56 220.3 116 91.4
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 1.4e-54 216.1 116 88.8
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 4.2e-54 214.5 116 87.9
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 4.2e-54 214.5 116 87.9
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 4.6e-53 211.1 116 87.9
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 8.7e-52 206.8 129 79.1
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 2.2e-50 202.2 137 74.5
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 1.4e-49 199.5 116 82.8
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 1.4e-49 199.5 116 82.8
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 1.4e-46 189.5 114 79.8
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 1.9e-46 189.1 116 78.4
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 3.2e-46 188.3 114 77.2
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 4.2e-46 188.0 114 76.3
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 4.2e-46 188.0 111 78.4
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 4.2e-46 188.0 111 78.4
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 5.5e-46 187.6 111 79.3
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 5.5e-46 187.6 111 79.3
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 7.2e-46 187.2 114 76.3
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 7.2e-46 187.2 114 78.1
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 7.2e-46 187.2 114 78.9
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 9.4e-46 186.8 111 78.4
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 9.4e-46 186.8 111 79.3
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 1.2e-45 186.4 111 78.4
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 1.6e-45 186.0 111 77.5
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 2.1e-45 185.7 116 77.6
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 2.1e-45 185.7 114 76.3
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 2.1e-45 185.7 111 78.4
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 2.7e-45 185.3 111 81.1
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 2.7e-45 185.3 111 77.5
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 2.7e-45 185.3 111 78.4
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 3.6e-45 184.9 111 77.5
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 6.1e-45 184.1 111 77.5
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 6.1e-45 184.1 111 76.6
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 1.0e-44 183.3 111 76.6
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 1.8e-44 182.6 109 78.9
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 2.3e-44 182.2 111 78.4
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 2.3e-44 182.2 111 76.6
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 3.0e-44 181.8 111 76.6
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 3.0e-44 181.8 111 76.6
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 3.9e-44 181.4 111 74.8
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 3.9e-44 181.4 111 75.7
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 6.7e-44 180.6 111 76.6
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 8.8e-44 180.3 111 77.5
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 8.8e-44 180.3 111 76.6
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 1.1e-43 179.9 111 75.7
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 1.1e-43 179.9 116 74.1
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.1e-43 179.9 111 75.7
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 1.5e-43 179.5 111 76.6
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 1.5e-43 179.5 111 76.6
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 1.5e-43 179.5 111 74.8
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 1.5e-43 179.5 111 75.7
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 2.0e-43 179.1 111 75.7
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 2.0e-43 179.1 109 77.1
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 2.0e-43 179.1 114 73.7
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 2.0e-43 179.1 111 76.6
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 2.5e-43 178.7 114 71.9
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 2.5e-43 178.7 111 75.7
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 3.3e-43 178.3 111 75.7
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 3.3e-43 178.3 111 74.8
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 4.3e-43 177.9 111 74.8
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 5.7e-43 177.6 111 75.7
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 5.7e-43 177.6 113 75.2
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 1.3e-42 176.4 112 73.2
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 2.2e-42 175.6 111 76.6
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 2.2e-42 175.6 111 72.1
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 2.2e-42 175.6 111 74.8
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 2.8e-42 175.3 111 73.9
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 2.8e-42 175.3 111 74.8
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 6.3e-42 174.1 111 74.8
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 8.2e-42 173.7 111 74.8
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 8.2e-42 173.7 111 74.8
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 1.1e-41 173.3 111 73.9
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 1.1e-41 173.3 114 71.9
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 1.1e-41 173.3 111 75.7
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 1.4e-41 172.9 111 73.9
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 1.8e-41 172.6 112 71.4
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 2.4e-41 172.2 111 73.9
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 2.4e-41 172.2 111 73.9
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 2.4e-41 172.2 111 72.1
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 2.4e-41 172.2 111 73.0
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 4.1e-41 171.4 112 70.5
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 4.1e-41 171.4 111 73.0
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 6.9e-41 170.6 111 73.9
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 6.9e-41 170.6 109 71.6
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 9.1e-41 170.2 107 74.8
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 1.2e-40 169.9 111 73.9
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 1.2e-40 169.9 111 73.0
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 2.0e-40 169.1 112 72.3
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 1.0e-39 166.8 107 72.9
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 1.7e-39 166.0 111 69.4
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 2.2e-39 165.6 115 69.6
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 1.9e-38 162.5 109 69.7
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 7.2e-38 160.6 109 67.9
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 4.7e-37 157.9 135 60.0
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 4.7e-37 157.9 109 68.8
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 9.7e-35 150.2 110 63.6
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 1.7e-34 149.4 103 69.9
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 6.3e-34 147.5 97 71.1
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 7.0e-33 144.1 99 65.7
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 7.0e-33 144.1 109 63.3
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 9.1e-33 143.7 110 61.8
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 3.5e-32 141.7 106 67.9
Gohir.D06G159100 Gossypium hirsutum HOM05D005610 ORTHO05D006181 1.7e-31 139.4 84 72.6
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 7.2e-30 134.0 132 53.0
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 2.7e-29 132.1 75 84.0
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 2.7e-29 132.1 75 84.0
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 2.3e-28 129.0 74 85.1
CSS0025052 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 3.0e-28 128.6 81 72.8
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 3.9e-28 128.3 84 75.0
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 1.1e-27 126.7 109 56.0
FAN24G2055 Fragaria x ananassa HOM05D005610 ORTHO05D006181 3.3e-27 125.2 81 66.7
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 4.4e-27 124.8 174 44.3
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 1.3e-26 123.2 109 54.1
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 1.3e-26 123.2 111 53.2
Actinidia02323 Actinidia chinensis HOM05D005610 ORTHO05D006181 1.6e-24 116.3 67 80.6
HanXRQChr15g0470051 Helianthus annuus HOM05D005610 ORTHO05D006181 2.0e-24 115.9 88 62.5
Zm00001eb004040 Zea mays HOM05D005610 ORTHO05D006181 4.5e-24 114.8 74 70.3
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 5.9e-24 114.4 70 77.1
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 1.1e-22 110.2 70 75.7
CBR_g27782 Chara braunii HOM05D005610 ORTHO05D001468 9.4e-22 107.1 112 49.1
FAN27G3428 Fragaria x ananassa HOM05D005610 ORTHO05D006181 2.3e-20 102.4 71 64.8
AagrBONN_evm.TU.Sc2ySwM_228.3334 Anthoceros agrestis HOM05D005610 ORTHO05D006181 6.8e-20 100.9 137 39.4
Pp3c3_34050 Physcomitrium patens HOM05D005610 ORTHO05D006181 7.5e-19 97.4 82 58.5
TPR.G7342 Trifolium pratense HOM05D005610 ORTHO05D006181 2.8e-18 95.5 59 71.2
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 3.7e-18 95.1 61 75.4
FAN20G1916 Fragaria x ananassa HOM05D005610 ORTHO05D006181 4.1e-17 91.7 54 74.1
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 1.2e-13 80.1 54 72.2
RcHm_v2.0_Chr7g0240711 Rosa chinensis HOM05D005610 ORTHO05D006181 8.0e-13 77.4 48 70.8
RcHm_v2.0_Chr7g0240721 Rosa chinensis HOM05D005610 ORTHO05D006181 1.2e-11 73.6 50 70.0
SEGI_27415 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 4.8e-10 68.2 60 56.7
CARHR125830 Cardamine hirsuta HOM05D005610 ORTHO05D006181 6.3e-10 67.8 38 84.2
Migut.M01383 Erythranthe guttata HOM05D005610 ORTHO05D006181 5.5e-06 54.7 58 46.6
CiPaw.09G101200 Carya illinoinensis HOM05D005610 ORTHO05D006181 9.5e-06 53.9 46 56.5


User provided reference genes

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