Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR075420 Cardamine hirsuta HOM05D005169 ORTHO05D006436 6.0e-103 377.5 186 100.0
Thhalv10021959m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 5.1e-70 268.1 194 78.4
AT3G01516 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 8.7e-70 267.3 187 76.5
C09p75080 Brassica napus HOM05D005169 ORTHO05D006436 8.2e-68 260.8 189 78.8
BolC5t35156H Brassica oleracea HOM05D005169 ORTHO05D006436 8.2e-68 260.8 189 78.8
BcaC05g30410 Brassica carinata HOM05D005169 ORTHO05D006436 2.4e-67 259.2 189 78.3
A05p44490 Brassica napus HOM05D005169 ORTHO05D006436 5.9e-66 254.6 188 76.6
BraA05t23207Z Brassica rapa HOM05D005169 ORTHO05D006436 5.9e-66 254.6 188 76.6
Carub.0003s0056 Capsella rubella HOM05D005169 ORTHO05D006436 1.3e-65 253.4 190 75.3
AL3G10640 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 1.6e-63 246.5 185 73.0
BcaC05g30449 Brassica carinata HOM05D005169 ORTHO05D006436 1.8e-62 243.0 191 73.8
BraA10t44462Z Brassica rapa HOM05D005169 ORTHO05D006436 2.0e-58 229.6 198 64.6
A10p23980 Brassica napus HOM05D005169 ORTHO05D006436 1.7e-57 226.5 198 63.6
Sp3g00540 Schrenkiella parvula HOM05D005169 ORTHO05D006436 7.2e-56 221.1 188 67.0
BolC9t59083H Brassica oleracea HOM05D005169 ORTHO05D006436 6.1e-55 218.0 197 60.9
THA.LOC104821080 Tarenaya hassleriana HOM05D005169 ORTHO05D006436 2.8e-52 209.1 187 64.2
CARHR198620 Cardamine hirsuta HOM05D005169 ORTHO05D006436 1.2e-50 203.8 214 57.9
AL6G25460 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 1.3e-44 183.7 212 53.8
Aa31LG5G10650 Aethionema arabicum HOM05D005169 ORTHO05D006436 4.8e-44 181.8 180 61.1
C09p62450 Brassica napus HOM05D005169 ORTHO05D006436 1.8e-43 179.9 198 55.6
Carub.0006s1286 Capsella rubella HOM05D005169 ORTHO05D006436 7.0e-43 177.9 233 48.9
BraA02t05235Z Brassica rapa HOM05D005169 ORTHO05D006436 4.8e-36 155.2 163 55.8
Aa31LG11G14770 Aethionema arabicum HOM05D005169 ORTHO05D006436 2.4e-35 152.9 234 46.6
Thhalv10014646m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 7.7e-34 147.9 216 46.8
MD17G1033200 Malus domestica HOM05D005169 ORTHO05D006436 5.5e-32 141.7 162 52.5
Sp6g29350 Schrenkiella parvula HOM05D005169 ORTHO05D006436 1.8e-30 136.7 220 42.3
Haze_14687 Corylus avellana HOM05D005169 ORTHO05D006436 2.3e-30 136.3 158 51.3
BcaNung03104 Brassica carinata HOM05D005169 ORTHO05D006436 8.8e-30 134.4 213 44.6
Lju41C36T6 Lonicera japonica HOM05D005169 ORTHO05D006436 1.2e-29 134.0 183 44.3
Prupe.3G286300 Prunus persica HOM05D005169 ORTHO05D006436 2.0e-29 133.3 160 45.6
COL.COLO4_28998 Corchorus olitorius HOM05D005169 ORTHO05D006436 7.5e-29 131.3 199 44.7
TAR629G1679 Trochodendron aralioides HOM05D005169 ORTHO05D006436 1.3e-28 130.6 190 45.3
Actinidia36094 Actinidia chinensis HOM05D005169 ORTHO05D006436 3.7e-28 129.0 178 44.9
BcaC03g13455 Brassica carinata HOM05D005169 ORTHO05D006436 8.3e-28 127.9 152 51.3
TAR622G1423 Trochodendron aralioides HOM05D005169 ORTHO05D006436 8.3e-28 127.9 188 43.1
Cfa007415 Carpinus fangiana HOM05D005169 ORTHO05D006436 1.1e-27 127.5 195 44.1
Thecc.04G011300 Theobroma cacao HOM05D005169 ORTHO05D006436 1.8e-27 126.7 176 46.6
CiPaw.03G039400 Carya illinoinensis HOM05D005169 ORTHO05D006436 2.4e-27 126.3 197 45.2
MELO3C021551.2 Cucumis melo HOM05D005169 ORTHO05D006436 3.1e-27 125.9 158 43.7
CsaV3_5G027330 Cucumis sativus L. HOM05D005169 ORTHO05D005030 7.0e-27 124.8 158 43.7
Dinv35078 Davidia involucrata HOM05D005169 ORTHO05D006436 7.0e-27 124.8 155 47.1
Dinv33480 Davidia involucrata HOM05D005169 ORTHO05D006436 9.1e-27 124.4 158 47.5
Potri.001G349700 Populus trichocarpa HOM05D005169 ORTHO05D006436 1.6e-26 123.6 180 43.3
Gorai.006G030600 Gossypium raimondii HOM05D005169 ORTHO05D006436 2.0e-26 123.2 152 46.7
AT5G14690 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 3.5e-26 122.5 217 41.5
vmacro05837 Vaccinium macrocarpon HOM05D005169 ORTHO05D006436 3.5e-26 122.5 191 42.9
Gohir.D09G026600 Gossypium hirsutum HOM05D005169 ORTHO05D006436 7.7e-26 121.3 156 46.2
QL02p075994 Quercus lobata HOM05D005169 ORTHO05D006436 1.0e-25 120.9 203 43.3
Gohir.A09G026900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.3e-25 120.6 157 45.2
ClCG09G019030 Citrullus lanatus HOM05D005169 ORTHO05D006436 1.7e-25 120.2 162 43.2
HanXRQChr09g0266101 Helianthus annuus HOM05D005169 ORTHO05D006436 1.7e-25 120.2 151 46.4
Nitab4.5_0002416g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 2.9e-25 119.4 187 40.1
Nitab4.5_0002306g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 5.0e-25 118.6 155 43.2
Atru.chr6.2317 Acer truncatum HOM05D005169 ORTHO05D006256 8.6e-25 117.9 160 42.5
Lsat_1_v5_gn_4_182740 Lactuca sativa HOM05D005169 ORTHO05D006436 8.6e-25 117.9 178 44.4
Peaxi162Scf00700g00522 Petunia axillaris HOM05D005169 ORTHO05D006436 1.1e-24 117.5 155 43.2
Ciclev10016934m.g Citrus clementina HOM05D005169 ORTHO05D006436 1.9e-24 116.7 152 46.1
TWI56G0416 Tripterygium wilfordii HOM05D005169 ORTHO05D006436 2.5e-24 116.3 159 45.9
FAN05G3636 Fragaria x ananassa HOM05D005169 ORTHO05D006436 3.3e-24 115.9 152 44.1
Sabra16G0229100 Salix brachista HOM05D005169 ORTHO05D006436 3.3e-24 115.9 157 47.8
Lsat_1_v5_gn_2_91781 Lactuca sativa HOM05D005169 ORTHO05D006436 4.2e-24 115.5 162 43.8
PGR142G3938 Punica granatum HOM05D005169 ORTHO05D006436 4.2e-24 115.5 174 43.1
CANSAT64G1588 Cannabis sativa HOM05D005169 ORTHO05D006436 5.5e-24 115.2 171 41.5
Manes.15G165700 Manihot esculenta HOM05D005169 ORTHO05D006436 5.5e-24 115.2 186 41.9
Gohir.D11G070900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 7.2e-24 114.8 155 47.7
Gorai.007G076200 Gossypium raimondii HOM05D005169 ORTHO05D006436 7.2e-24 114.8 155 47.7
MSTRG.3296 Avicennia marina HOM05D005169 ORTHO05D006436 2.1e-23 113.2 157 45.2
CSS0037801 Camellia sinensis var. sinensis HOM05D005169 ORTHO05D006436 2.1e-23 113.2 160 42.5
Psat1g056600 Pisum sativum HOM05D005169 ORTHO05D006436 2.1e-23 113.2 150 38.7
Nn3g16854 Nelumbo nucifera HOM05D005169 ORTHO05D006436 2.8e-23 112.8 158 44.3
PSO478G0492 Papaver somniferum HOM05D005169 ORTHO05D006436 2.8e-23 112.8 172 41.3
FAN09G4345 Fragaria x ananassa HOM05D005169 ORTHO05D006436 3.6e-23 112.5 151 43.7
PSO017G2305 Papaver somniferum HOM05D005169 ORTHO05D006436 3.6e-23 112.5 168 41.7
Gohir.A11G067000 Gossypium hirsutum HOM05D005169 ORTHO05D006436 6.1e-23 111.7 161 45.3
ECA232G1653 Erigeron canadensis HOM05D005169 ORTHO05D006436 1.0e-22 110.9 150 42.7
FAN14G0546 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.4e-22 110.5 161 44.1
FvH4_6g50860 Fragaria vesca HOM05D005169 ORTHO05D006436 4.0e-22 109.0 161 43.5
MBI16_g27097_MAGBIO Magnolia biondii HOM05D005169 ORTHO05D006436 5.2e-22 108.6 153 39.9
Rhsim10G0020400 Rhododendron simsii HOM05D005169 ORTHO05D006256 5.2e-22 108.6 154 43.5
Lalb_Chr06g0175951 Lupinus albus HOM05D005169 ORTHO05D006436 1.2e-21 107.5 153 41.8
RcHm_v2.0_Chr2g0172251 Rosa chinensis HOM05D005169 ORTHO05D006436 1.2e-21 107.5 151 43.0
Cc07_g02080 Coffea canephora HOM05D005169 ORTHO05D006436 2.0e-21 106.7 186 38.7
DCAR_021693 Daucus carota HOM05D005169 ORTHO05D006436 2.0e-21 106.7 153 44.4
HanXRQChr07g0198841 Helianthus annuus HOM05D005169 ORTHO05D006436 2.0e-21 106.7 174 40.8
EL10Ac1g00764 Beta vulgaris HOM05D005169 ORTHO05D006436 3.4e-21 105.9 151 45.7
AUR62023410 Chenopodium quinoa HOM05D005169 ORTHO05D006436 5.7e-21 105.1 152 42.8
AUR62013741 Chenopodium quinoa HOM05D005169 ORTHO05D006436 7.5e-21 104.8 152 42.8
Migut.K01374 Erythranthe guttata HOM05D005169 ORTHO05D006436 7.5e-21 104.8 160 40.6
Medtr6g406210 Medicago truncatula HOM05D005169 ORTHO05D006436 9.8e-21 104.4 151 41.1
Psat1g056720 Pisum sativum HOM05D005169 ORTHO05D006436 1.7e-20 103.6 152 37.5
Solyc12g062840.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 1.7e-20 103.6 183 35.0
SGA_v2.0_scaffold135G34886 Striga asiatica HOM05D005169 ORTHO05D006436 1.7e-20 103.6 179 37.4
Nitab4.5_0014517g0010 Nicotiana tabacum HOM05D005169 ORTHO05D006436 2.2e-20 103.2 163 38.7
FAN05G4915 Fragaria x ananassa HOM05D005169 ORTHO05D006436 2.8e-20 102.8 151 42.4
Sed0004184 Sechium edule HOM05D005169 ORTHO05D006436 2.8e-20 102.8 158 39.2
Ah.05g173110 Amaranthus hybridus HOM05D005169 ORTHO05D006436 3.7e-20 102.4 177 38.4
Oeu014861.1 Olea europaea HOM05D005169 ORTHO05D006436 3.7e-20 102.4 155 42.6
Hma1.2p1_0858F.1_g229310 Hydrangea macrophylla HOM05D005169 ORTHO05D006436 4.9e-20 102.1 160 40.0
SalBow7G2461 Salvia bowleyana HOM05D005169 ORTHO05D006436 8.3e-20 101.3 154 41.6
PSO170G4554 Papaver somniferum HOM05D005169 ORTHO05D006436 3.1e-19 99.4 160 41.2
SHI27192 Sapria himalayana HOM05D005169 ORTHO05D006436 3.1e-19 99.4 171 37.4
PGSC0003DMG400000520 Solanum tuberosum HOM05D005169 ORTHO05D006436 3.1e-19 99.4 168 38.7
Oeu062928.1 Olea europaea HOM05D005169 ORTHO05D006436 5.4e-19 98.6 152 40.1
BcaC08g44071 Brassica carinata HOM05D005169 ORTHO05D006436 1.2e-18 97.4 59 83.1
SGA_v2.0_scaffold30G12455 Striga asiatica HOM05D005169 ORTHO05D006436 1.2e-18 97.4 159 42.1
Migut.H00106 Erythranthe guttata HOM05D005169 ORTHO05D006436 2.7e-18 96.3 163 38.7
Oeu043043.1 Olea europaea HOM05D005169 ORTHO05D006436 2.7e-18 96.3 158 40.5
DCAR_015051 Daucus carota HOM05D005169 ORTHO05D006436 1.0e-17 94.4 176 39.8
PSO144G0121 Papaver somniferum HOM05D005169 ORTHO05D006436 1.0e-17 94.4 160 40.0
Peaxi162Scf00129g00124 Petunia axillaris HOM05D005169 ORTHO05D006436 1.0e-17 94.4 155 40.0
BcaC04g22405 Brassica carinata HOM05D005169 ORTHO05D006436 1.3e-17 94.0 59 79.7
C09p19720 Brassica napus HOM05D005169 ORTHO05D006436 1.3e-17 94.0 59 79.7
Solyc02g086760.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 2.3e-17 93.2 170 37.1
Sopen02g031520 Solanum pennellii HOM05D005169 ORTHO05D006436 2.3e-17 93.2 171 36.8
Lalb_Chr21g0319501 Lupinus albus HOM05D005169 ORTHO05D006436 8.6e-17 91.3 150 38.7
TPR.G35382 Trifolium pratense HOM05D005169 ORTHO05D006436 1.1e-16 90.9 137 39.4
Glyma.19G006800 Glycine max HOM05D005169 ORTHO05D006436 5.6e-16 88.6 175 34.3
Sc16g0007930 Simmondsia chinensis HOM05D005169 ORTHO05D006436 5.6e-16 88.6 150 37.3
C02p07220 Brassica napus HOM05D005169 ORTHO05D006436 2.1e-15 86.7 74 66.2
BolC2t06654H Brassica oleracea HOM05D005169 ORTHO05D006436 2.1e-15 86.7 74 66.2
Glyma.05G006400 Glycine max HOM05D005169 ORTHO05D006436 4.7e-15 85.5 176 31.8
ATR0730G202 Amborella trichopoda HOM05D005169 ORTHO05D006436 6.1e-15 85.1 150 39.3
Cpa.g.sc3104.1 Carica papaya HOM05D005169 ORTHO05D006436 2.3e-14 83.2 138 40.6
Os01g0638800 Oryza sativa ssp. japonica HOM05D005169 ORTHO05D006436 3.1e-14 82.8 150 36.7
Sopen12g026520 Solanum pennellii HOM05D005169 ORTHO05D006436 4.0e-14 82.4 79 49.4
Duzib147G0144 Durio zibethinus HOM05D005169 ORTHO05D006436 1.3e-12 77.4 133 39.8
TPR.G10806 Trifolium pratense HOM05D005169 ORTHO05D006436 1.1e-11 74.3 52 57.7
Ah.03g141220 Amaranthus hybridus HOM05D005169 ORTHO05D006436 1.4e-11 73.9 109 41.3
HPP92_008039 Vanilla planifolia HOM05D005169 ORTHO05D006436 1.4e-11 73.9 176 34.7
Zm00001eb296260 Zea mays HOM05D005169 ORTHO05D006436 7.0e-11 71.6 150 39.3
unitig_899.g15487 Utricularia gibba HOM05D005169 ORTHO05D006436 2.3e-09 66.6 145 28.3
HPP92_024720 Vanilla planifolia HOM05D005169 ORTHO05D006436 2.3e-09 66.6 58 53.4
Zm00001eb157680 Zea mays HOM05D005169 ORTHO05D006436 3.0e-09 66.2 147 32.0
MD09G1031300 Malus domestica HOM05D005169 ORTHO05D006436 6.6e-09 65.1 111 44.1
SEGI_21704 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 1.5e-08 63.9 155 34.8
CDE07G0703 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 1.6e-07 60.5 83 36.1
Zm00001eb158870 Zea mays HOM05D005169 ORTHO05D006436 6.8e-06 55.1 157 26.8
SEGI_19138 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 8.9e-06 54.7 138 28.3


User provided reference genes

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