Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR075180 Cardamine hirsuta HOM05D005499 ORTHO05D006666 1.4e-55 219.5 127 100.0
CARHR105740 Cardamine hirsuta HOM05D005499 ORTHO05D006666 3.8e-48 194.9 128 89.8
Carub.0003s0032 Capsella rubella HOM05D005499 ORTHO05D006666 1.1e-47 193.4 124 86.3
Sp3g00320 Schrenkiella parvula HOM05D005499 ORTHO05D006666 1.9e-47 192.6 128 90.6
AL3G10400 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 9.3e-47 190.3 124 83.1
AT3G01740 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 1.2e-46 189.9 125 88.8
Thhalv10021760m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 2.3e-45 185.7 130 86.9
A03p32370 Brassica napus HOM05D005499 ORTHO05D006666 8.7e-45 183.7 124 80.6
BolC3t16211H Brassica oleracea HOM05D005499 ORTHO05D006666 8.7e-45 183.7 124 80.6
BraA03t12407Z Brassica rapa HOM05D005499 ORTHO05D006666 8.7e-45 183.7 124 80.6
C03p39430 Brassica napus HOM05D005499 ORTHO05D006666 2.5e-44 182.2 123 80.5
Duzib187G1007 Durio zibethinus HOM05D005499 ORTHO05D006666 1.1e-39 166.8 92 87.0
Gohir.A10G160300 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.1e-39 166.8 92 88.0
Lalb_Chr02g0157891 Lupinus albus HOM05D005499 ORTHO05D006666 1.1e-39 166.8 92 85.9
Atru.chr6.2492 Acer truncatum HOM05D005499 ORTHO05D006666 1.4e-39 166.4 116 71.6
COL.COLO4_29287 Corchorus olitorius HOM05D005499 ORTHO05D006666 1.9e-39 166.0 114 75.4
Gohir.D10G084868 Gossypium hirsutum HOM05D005499 ORTHO05D006666 3.2e-39 165.2 92 88.0
Thecc.04G028500 Theobroma cacao HOM05D005499 ORTHO05D006666 3.2e-39 165.2 92 85.9
THA.LOC104822403 Tarenaya hassleriana HOM05D005499 ORTHO05D006666 4.2e-39 164.9 112 86.6
Cpa.g.sc130.24 Carica papaya HOM05D005499 ORTHO05D006666 5.4e-39 164.5 92 87.0
CiPaw.03G051000 Carya illinoinensis HOM05D005499 ORTHO05D006666 5.4e-39 164.5 92 88.0
ECA238G0236 Erigeron canadensis HOM05D005499 ORTHO05D006666 7.1e-39 164.1 92 85.9
Gorai.011G092800 Gossypium raimondii HOM05D005499 ORTHO05D006666 7.1e-39 164.1 92 87.0
CARHR199040 Cardamine hirsuta HOM05D005499 ORTHO05D006666 9.3e-39 163.7 123 74.0
Duzib264G0656 Durio zibethinus HOM05D005499 ORTHO05D006666 1.2e-38 163.3 92 85.9
Gorai.012G089400 Gossypium raimondii HOM05D005499 ORTHO05D006666 1.2e-38 163.3 127 67.7
Dinv33378 Davidia involucrata HOM05D005499 ORTHO05D006666 2.1e-38 162.5 114 72.8
HanXRQChr01g0030421 Helianthus annuus HOM05D005499 ORTHO05D006666 2.1e-38 162.5 92 84.8
Lalb_Chr21g0317581 Lupinus albus HOM05D005499 ORTHO05D006666 2.1e-38 162.5 92 82.6
RcHm_v2.0_Chr3g0449841 Rosa chinensis HOM05D005499 ORTHO05D006666 2.1e-38 162.5 114 72.8
Nn4g24319 Nelumbo nucifera HOM05D005499 ORTHO05D006666 2.7e-38 162.2 92 84.8
Nitab4.5_0012484g0010 Nicotiana tabacum HOM05D005499 ORTHO05D006666 2.7e-38 162.2 92 84.8
Aa31LG5G10870 Aethionema arabicum HOM05D005499 ORTHO05D006666 4.6e-38 161.4 126 70.6
Ciclev10017154m.g Citrus clementina HOM05D005499 ORTHO05D006666 4.6e-38 161.4 92 83.7
Solyc11g010180.2 Solanum lycopersicum HOM05D005499 ORTHO05D006666 4.6e-38 161.4 92 81.5
Sopen11g004960 Solanum pennellii HOM05D005499 ORTHO05D006666 4.6e-38 161.4 92 81.5
Lj6g0007933 Lotus japonicus HOM05D005499 ORTHO05D006666 6.0e-38 161.0 92 83.7
Nitab4.5_0000743g0030 Nicotiana tabacum HOM05D005499 ORTHO05D006666 6.0e-38 161.0 92 83.7
FAN05G4095 Fragaria x ananassa HOM05D005499 ORTHO05D006666 7.9e-38 160.6 92 83.7
Phvul.003G262000 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 7.9e-38 160.6 92 83.7
TWI36G0940 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 7.9e-38 160.6 92 85.9
PGSC0003DMG400016154 Solanum tuberosum HOM05D005499 ORTHO05D006666 1.3e-37 159.8 92 81.5
FAN05G0237 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.8e-37 159.5 92 82.6
FAN05G2282 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.8e-37 159.5 92 82.6
Eucgr.J02294 Eucalyptus grandis HOM05D005499 ORTHO05D006666 2.3e-37 159.1 127 66.1
FvH4_6g02050 Fragaria vesca HOM05D005499 ORTHO05D006666 2.3e-37 159.1 92 82.6
FAN05G1403 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.3e-37 159.1 92 82.6
FAN09G0379 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.3e-37 159.1 92 82.6
FAN14G4216 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.3e-37 159.1 92 82.6
Hma1.2p1_0279F.1_g112320 Hydrangea macrophylla HOM05D005499 ORTHO05D006666 2.3e-37 159.1 92 82.6
Haze_14820 Corylus avellana HOM05D005499 ORTHO05D006666 3.0e-37 158.7 91 84.6
Rhsim10G0010400 Rhododendron simsii HOM05D005499 ORTHO05D006666 3.0e-37 158.7 92 83.7
VMungo0464G1619 Vigna mungo HOM05D005499 ORTHO05D006666 3.0e-37 158.7 92 81.5
Glyma.19G077100 Glycine max HOM05D005499 ORTHO05D006666 3.9e-37 158.3 92 81.5
Oeu003270.1 Olea europaea HOM05D005499 ORTHO05D006666 3.9e-37 158.3 92 83.7
FAN14G1883 Fragaria x ananassa HOM05D005499 ORTHO05D006666 5.1e-37 157.9 92 82.6
FAN14G2627 Fragaria x ananassa HOM05D005499 ORTHO05D006666 5.1e-37 157.9 92 82.6
Gohir.D04G079400 Gossypium hirsutum HOM05D005499 ORTHO05D006666 5.1e-37 157.9 127 66.1
MBI11_g21381_MAGBIO Magnolia biondii HOM05D005499 ORTHO05D006666 6.7e-37 157.5 114 71.9
TWI56G1275 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 6.7e-37 157.5 92 84.8
Cfa007270 Carpinus fangiana HOM05D005499 ORTHO05D006666 8.7e-37 157.1 91 83.5
Cc10_g08070 Coffea canephora HOM05D005499 ORTHO05D006666 8.7e-37 157.1 92 84.8
Migut.K01440 Erythranthe guttata HOM05D005499 ORTHO05D006666 8.7e-37 157.1 114 71.1
QL02p072772 Quercus lobata HOM05D005499 ORTHO05D006666 8.7e-37 157.1 91 83.5
Thhalv10014999m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 1.1e-36 156.8 124 70.2
Lsat_1_v5_gn_3_10761 Lactuca sativa HOM05D005499 ORTHO05D006666 1.5e-36 156.4 92 81.5
QL05p048106 Quercus lobata HOM05D005499 ORTHO05D006666 1.5e-36 156.4 91 82.4
Ca_25364_v3 Cicer arietinum L. HOM05D005499 ORTHO05D006666 2.5e-36 155.6 91 81.3
DCAR_011296 Daucus carota HOM05D005499 ORTHO05D006666 2.5e-36 155.6 92 81.5
TAR371G0544 Trochodendron aralioides HOM05D005499 ORTHO05D006666 2.5e-36 155.6 90 82.2
CSS0020557 Camellia sinensis var. sinensis HOM05D005499 ORTHO05D006666 3.3e-36 155.2 92 81.5
Gohir.A05G341200 Gossypium hirsutum HOM05D005499 ORTHO05D006666 3.3e-36 155.2 92 82.6
Psat1g031800 Pisum sativum HOM05D005499 ORTHO05D006666 4.3e-36 154.8 92 78.3
TPR.G3708 Trifolium pratense HOM05D005499 ORTHO05D006666 4.3e-36 154.8 92 79.3
Prupe.6G125800 Prunus persica HOM05D005499 ORTHO05D006666 5.6e-36 154.5 90 82.2
Actinidia05936 Actinidia chinensis HOM05D005499 ORTHO05D006666 7.4e-36 154.1 92 81.5
Aqoxy3G01444 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 7.4e-36 154.1 92 81.5
AT5G14290 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 7.4e-36 154.1 124 68.5
arahy.Tifrunner.gnm1.ann1.C4BPDT Arachis hypogaea HOM05D005499 ORTHO05D006666 7.4e-36 154.1 92 79.3
arahy.Tifrunner.gnm1.ann1.JB8R4I Arachis hypogaea HOM05D005499 ORTHO05D006666 7.4e-36 154.1 92 79.3
CANSAT11G2604 Cannabis sativa HOM05D005499 ORTHO05D006666 7.4e-36 154.1 114 71.1
Medtr6g078300 Medicago truncatula HOM05D005499 ORTHO05D006666 7.4e-36 154.1 92 78.3
PSO478G5160 Papaver somniferum HOM05D005499 ORTHO05D006666 9.6e-36 153.7 114 70.2
Phvul.003G138900 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 9.6e-36 153.7 92 82.6
Phvul.003G139152 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 9.6e-36 153.7 92 82.6
SalBow7G4317 Salvia bowleyana HOM05D005499 ORTHO05D006666 9.6e-36 153.7 92 80.4
Sed0019428 Sechium edule HOM05D005499 ORTHO05D006666 9.6e-36 153.7 92 80.4
Sc10g0004570 Simmondsia chinensis HOM05D005499 ORTHO05D006666 9.6e-36 153.7 92 78.3
Glyma.05G073700 Glycine max HOM05D005499 ORTHO05D006666 1.3e-35 153.3 92 79.3
ClCG04G001400 Citrullus lanatus HOM05D005499 ORTHO05D006666 1.6e-35 152.9 92 82.6
FvH4_4g13440 Fragaria vesca HOM05D005499 ORTHO05D006666 2.1e-35 152.5 121 67.8
FAN12G0501 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.1e-35 152.5 121 67.8
Potri.001G335600 Populus trichocarpa HOM05D005499 ORTHO05D006666 2.1e-35 152.5 127 63.8
Aqoxy5G03538 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 2.8e-35 152.1 114 67.5
Manes.15G156800 Manihot esculenta HOM05D005499 ORTHO05D006666 3.7e-35 151.8 92 80.4
Hund13392 Selenicereus undatus HOM05D005499 ORTHO05D006666 4.8e-35 151.4 92 79.3
unitig_32.g10669 Utricularia gibba HOM05D005499 ORTHO05D006666 4.8e-35 151.4 114 67.5
MSTRG.3267 Avicennia marina HOM05D005499 ORTHO05D006666 1.4e-34 149.8 92 78.3
AUR62036750 Chenopodium quinoa HOM05D005499 ORTHO05D006666 1.8e-34 149.4 92 77.2
Peaxi162Scf00016g00048 Petunia axillaris HOM05D005499 ORTHO05D006666 1.8e-34 149.4 86 80.2
AL6G24990 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 2.4e-34 149.1 90 83.3
Sabra16G0216600 Salix brachista HOM05D005499 ORTHO05D006666 2.4e-34 149.1 127 63.0
SGA_v2.0_scaffold47G17558 Striga asiatica HOM05D005499 ORTHO05D006666 2.4e-34 149.1 92 79.3
CAN.G905.22 Capsicum annuum HOM05D005499 ORTHO05D006666 3.1e-34 148.7 83 83.1
MELO3C008981.2 Cucumis melo HOM05D005499 ORTHO05D006666 5.3e-34 147.9 123 65.0
AUR62013851 Chenopodium quinoa HOM05D005499 ORTHO05D006666 9.0e-34 147.1 92 77.2
PSO782G3924 Papaver somniferum HOM05D005499 ORTHO05D006666 9.0e-34 147.1 92 78.3
TAR629G1334 Trochodendron aralioides HOM05D005499 ORTHO05D006666 1.2e-33 146.7 92 77.2
Ah.00g000560 Amaranthus hybridus HOM05D005499 ORTHO05D006666 1.5e-33 146.4 92 76.1
CsaV3_4G031040 Cucumis sativus L. HOM05D005499 ORTHO05D006666 7.6e-33 144.1 90 77.8
ATR1098G108 Amborella trichopoda HOM05D005499 ORTHO05D006666 9.9e-33 143.7 111 73.0
HPP92_006243 Vanilla planifolia HOM05D005499 ORTHO05D006666 9.9e-33 143.7 92 73.9
Medtr4g073700 Medicago truncatula HOM05D005499 ORTHO05D006666 1.3e-32 143.3 91 79.1
Cc07_g00480 Coffea canephora HOM05D005499 ORTHO05D006666 6.4e-32 141.0 92 77.2
Nitab4.5_0003764g0020 Nicotiana tabacum HOM05D005499 ORTHO05D006666 1.1e-31 140.2 92 75.0
PGSC0003DMG400023637 Solanum tuberosum HOM05D005499 ORTHO05D006666 2.4e-31 139.0 92 71.7
Psat7g172960 Pisum sativum HOM05D005499 ORTHO05D006666 3.2e-31 138.7 91 76.9
Os12g0244200 Oryza sativa ssp. japonica HOM05D005499 ORTHO05D006666 2.1e-30 136.0 92 71.7
EL10Ac2g02820 Beta vulgaris HOM05D005499 ORTHO05D006666 3.0e-29 132.1 92 71.7
SHI11403 Sapria himalayana HOM05D005499 ORTHO05D006666 3.9e-29 131.7 90 68.9
Zm00001eb328460 Zea mays HOM05D005499 ORTHO05D006666 1.1e-28 130.2 91 69.2
Sed0018883 Sechium edule HOM05D005499 ORTHO05D006666 1.9e-28 129.4 91 71.4
PSO782G2325 Papaver somniferum HOM05D005499 ORTHO05D006666 9.6e-28 127.1 79 77.2
FAN21G0236 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.1e-26 122.1 80 70.0
SEGI_30393 Sequoiadendron giganteum HOM05D005499 ORTHO05D006666 1.2e-25 120.2 88 64.8
CARHR266370 Cardamine hirsuta HOM05D005499 ORTHO05D006666 1.5e-25 119.8 89 89.9
Nn1g08773 Nelumbo nucifera HOM05D005499 ORTHO05D006666 3.9e-21 105.1 78 69.2
FAN02G3728 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.1e-20 103.6 57 80.7
CBR_g38683 Chara braunii HOM05D005499 ORTHO05D006666 2.8e-19 99.0 94 52.1
Gohir.1Z049635 Gossypium hirsutum HOM05D005499 ORTHO05D006666 6.3e-19 97.8 51 88.2
Pp3c26_11040 Physcomitrium patens HOM05D005499 ORTHO05D006666 8.2e-19 97.4 92 53.3
Mapoly0005s0032 Marchantia polymorpha HOM05D005499 ORTHO05D006666 9.0e-18 94.0 83 51.8
AagrBONN_evm.TU.Sc2ySwM_362.2497 Anthoceros agrestis HOM05D005499 ORTHO05D006666 4.5e-17 91.7 81 54.3
SMO164G0004 Selaginella moellendorffii HOM05D005499 ORTHO05D006666 2.9e-16 89.0 89 48.3
TAR374G0914 Trochodendron aralioides HOM05D005499 ORTHO05D006666 6.1e-14 81.3 62 67.7
MCO16G647 Micromonas commoda HOM05D005499 ORTHO05D006666 3.1e-10 68.9 106 38.7
Cre12.g546000 Chlamydomonas reinhardtii HOM05D005499 ORTHO05D006666 9.1e-10 67.4 88 40.9
PRCOL_00001894 Prasinoderma coloniale HOM05D005499 ORTHO05D006666 6.1e-06 54.7 73 38.4


User provided reference genes

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