Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR074720 Cardamine hirsuta HOM05D006824 ORTHO05D008779 1.8e-53 212.2 98 100.0
AT1G79790 Arabidopsis thaliana HOM05D006824 ORTHO05D008779 1.5e-44 182.6 96 87.5
Carub.0002s2772 Capsella rubella HOM05D006824 ORTHO05D008779 1.6e-43 179.1 93 87.1
Sp5g35980 Schrenkiella parvula HOM05D006824 ORTHO05D008779 1.1e-42 176.4 93 82.8
BraA07t30276Z Brassica rapa HOM05D006824 ORTHO05D008779 1.4e-42 176.0 93 82.8
Thhalv10019052m.g Eutrema salsugineum HOM05D006824 ORTHO05D008779 1.4e-42 176.0 93 86.0
BolC6t38040H Brassica oleracea HOM05D006824 ORTHO05D008779 3.1e-42 174.9 97 79.4
AL2G41760 Arabidopsis lyrata HOM05D006824 ORTHO05D008779 4.1e-42 174.5 93 84.9
A07p26320 Brassica napus HOM05D006824 ORTHO05D008779 1.5e-41 172.6 93 80.6
C06p28710 Brassica napus HOM05D006824 ORTHO05D008779 2.0e-41 172.2 93 80.6
CARHR049030 Cardamine hirsuta HOM05D006824 ORTHO05D008779 7.7e-41 170.2 91 86.8
Aa31LG4G40 Aethionema arabicum HOM05D006824 ORTHO05D008779 4.8e-35 151.0 90 74.4
THA.LOC104813550 Tarenaya hassleriana HOM05D006824 ORTHO05D008779 1.8e-29 132.5 89 66.3
Atru.chr12.2132 Acer truncatum HOM05D006824 ORTHO05D008779 1.5e-28 129.4 88 62.5
Manes.14G158930 Manihot esculenta HOM05D006824 ORTHO05D008779 1.5e-28 129.4 88 64.8
Potri.010G143000 Populus trichocarpa HOM05D006824 ORTHO05D008779 1.5e-28 129.4 88 65.9
CAN.G694.18 Capsicum annuum HOM05D006824 ORTHO05D008779 2.0e-28 129.0 88 67.0
Nitab4.5_0005183g0030 Nicotiana tabacum HOM05D006824 ORTHO05D008779 2.6e-28 128.6 88 64.8
Dinv04348 Davidia involucrata HOM05D006824 ORTHO05D008779 1.3e-27 126.3 88 67.0
GSVIVG01019144001 Vitis vinifera HOM05D006824 ORTHO05D008779 4.8e-27 124.4 87 63.2
Sopen05g034220 Solanum pennellii HOM05D006824 ORTHO05D008779 8.2e-27 123.6 88 63.6
Solyc05g055820.3 Solanum lycopersicum HOM05D006824 ORTHO05D008779 1.1e-26 123.2 90 61.1
AUR62000332 Chenopodium quinoa HOM05D006824 ORTHO05D008779 1.4e-26 122.9 88 62.5
AUR62006674 Chenopodium quinoa HOM05D006824 ORTHO05D008779 1.4e-26 122.9 88 62.5
SalBow3G1586 Salvia bowleyana HOM05D006824 ORTHO05D008779 1.4e-26 122.9 87 63.2
PGSC0003DMG400023472 Solanum tuberosum HOM05D006824 ORTHO05D008779 1.4e-26 122.9 88 63.6
Thecc.05G206500 Theobroma cacao HOM05D006824 ORTHO05D008779 1.8e-26 122.5 91 60.4
Sabra10G0110900 Salix brachista HOM05D006824 ORTHO05D008779 2.4e-26 122.1 87 63.2
CsaV3_2G009540 Cucumis sativus L. HOM05D006824 ORTHO05D008779 3.1e-26 121.7 88 61.4
Cc09_g03430 Coffea canephora HOM05D006824 ORTHO05D008779 4.1e-26 121.3 92 63.0
Rhsim03G0265800 Rhododendron simsii HOM05D006824 ORTHO05D008779 4.1e-26 121.3 89 60.7
Haze_04530 Corylus avellana HOM05D006824 ORTHO05D008779 5.3e-26 120.9 89 59.6
Duzib128G1599 Durio zibethinus HOM05D006824 ORTHO05D008779 5.3e-26 120.9 91 58.2
Oeu010150.1 Olea europaea HOM05D006824 ORTHO05D008779 5.3e-26 120.9 87 62.1
VMungo1383G3541 Vigna mungo HOM05D006824 ORTHO05D008779 5.3e-26 120.9 88 60.2
Actinidia38928 Actinidia chinensis HOM05D006824 ORTHO05D008779 7.0e-26 120.6 88 60.2
Phvul.008G055700 Phaseolus vulgaris HOM05D006824 ORTHO05D008779 7.0e-26 120.6 88 60.2
RcHm_v2.0_Chr3g0448181 Rosa chinensis HOM05D006824 ORTHO05D008779 7.0e-26 120.6 92 57.6
ClCG11G010940 Citrullus lanatus HOM05D006824 ORTHO05D008779 9.1e-26 120.2 88 61.4
Lj8A196G47 Lonicera japonica HOM05D006824 ORTHO05D008779 9.1e-26 120.2 88 62.5
MD12G1258900 Malus domestica HOM05D006824 ORTHO05D008779 9.1e-26 120.2 88 60.2
Medtr7g079530 Medicago truncatula HOM05D006824 ORTHO05D008779 2.0e-25 119.0 88 60.2
PGR031G0982 Punica granatum HOM05D006824 ORTHO05D008779 2.6e-25 118.6 87 58.6
Sed0011929 Sechium edule HOM05D006824 ORTHO05D008779 2.6e-25 118.6 90 60.0
SGA_v2.0_scaffold13G06472 Striga asiatica HOM05D006824 ORTHO05D008779 2.6e-25 118.6 85 58.8
TPR.G28449 Trifolium pratense HOM05D006824 ORTHO05D008779 2.6e-25 118.6 88 60.2
vmacro06000 Vaccinium macrocarpon HOM05D006824 ORTHO05D008779 3.5e-25 118.2 89 58.4
FAN05G0802 Fragaria x ananassa HOM05D006824 ORTHO05D008779 4.5e-25 117.9 83 63.9
Gohir.A02G138800 Gossypium hirsutum HOM05D006824 ORTHO05D008779 4.5e-25 117.9 89 56.2
Gorai.003G050700 Gossypium raimondii HOM05D006824 ORTHO05D008779 4.5e-25 117.9 89 56.2
EL10Ac4g09985 Beta vulgaris HOM05D006824 ORTHO05D008779 1.0e-24 116.7 92 62.0
FAN02G3690 Fragaria x ananassa HOM05D006824 ORTHO05D008779 1.0e-24 116.7 88 59.1
Eucgr.H01379 Eucalyptus grandis HOM05D006824 ORTHO05D008779 1.3e-24 116.3 89 58.4
HanXRQChr11g0323941 Helianthus annuus HOM05D006824 ORTHO05D008779 1.3e-24 116.3 85 62.4
Psat3g104840 Pisum sativum HOM05D006824 ORTHO05D008779 1.7e-24 115.9 87 57.5
Ca_07965_v3 Cicer arietinum L. HOM05D006824 ORTHO05D008779 2.2e-24 115.5 88 58.0
TAR362G0347 Trochodendron aralioides HOM05D006824 ORTHO05D008779 2.2e-24 115.5 88 61.4
ECA232G2571 Erigeron canadensis HOM05D006824 ORTHO05D008779 3.8e-24 114.8 87 59.8
TWI14G0776 Tripterygium wilfordii HOM05D006824 ORTHO05D008779 3.8e-24 114.8 89 57.3
Glyma.09G252100 Glycine max HOM05D006824 ORTHO05D008779 5.0e-24 114.4 88 58.0
Lsat_1_v5_gn_9_48761 Lactuca sativa HOM05D006824 ORTHO05D008779 5.0e-24 114.4 85 62.4
QL01p046721 Quercus lobata HOM05D006824 ORTHO05D008779 5.0e-24 114.4 87 59.8
CSS0012922 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 6.5e-24 114.0 88 58.0
CSS0029100 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 6.5e-24 114.0 88 58.0
CANSAT54G2581 Cannabis sativa HOM05D006824 ORTHO05D008779 6.5e-24 114.0 87 56.3
DCAR_005505 Daucus carota HOM05D006824 ORTHO05D008779 6.5e-24 114.0 88 58.0
MBI08_g02107_MAGBIO Magnolia biondii HOM05D006824 ORTHO05D008779 1.1e-23 113.2 85 61.2
arahy.Tifrunner.gnm1.ann1.3Y20MY Arachis hypogaea HOM05D006824 ORTHO05D008779 1.9e-23 112.5 88 52.3
arahy.Tifrunner.gnm1.ann1.8HY0WZ Arachis hypogaea HOM05D006824 ORTHO05D008779 1.9e-23 112.5 88 52.3
Glyma.18G240500 Glycine max HOM05D006824 ORTHO05D008779 1.9e-23 112.5 88 56.8
Prupe.6G359400 Prunus persica HOM05D006824 ORTHO05D008779 1.9e-23 112.5 88 60.2
CDE09G0666 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 3.2e-23 111.7 90 57.8
Lalb_Chr19g0126751 Lupinus albus HOM05D006824 ORTHO05D008779 3.2e-23 111.7 85 56.5
COL.COLO4_19831 Corchorus olitorius HOM05D006824 ORTHO05D008779 5.5e-23 110.9 91 56.0
CiPaw.08G117600 Carya illinoinensis HOM05D006824 ORTHO05D008779 2.1e-22 109.0 89 56.2
Migut.F01795 Erythranthe guttata HOM05D006824 ORTHO05D008779 1.8e-21 105.9 85 54.1
CDE02G0053 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 2.3e-21 105.5 81 59.3
FAN14G1847 Fragaria x ananassa HOM05D006824 ORTHO05D008779 6.7e-21 104.0 72 65.3
Mapoly0002s0020 Marchantia polymorpha HOM05D006824 ORTHO05D008779 8.8e-21 103.6 80 53.8
Aqoxy5G00154 Aquilegia oxysepala HOM05D006824 ORTHO05D008779 2.0e-20 102.4 87 54.0
PSO170G6807 Papaver somniferum HOM05D006824 ORTHO05D008779 4.4e-20 101.3 85 55.3
CBR_g54655 Chara braunii HOM05D006824 ORTHO05D008779 4.8e-19 97.8 88 46.6
SalBow3G1143 Salvia bowleyana HOM05D006824 ORTHO05D008779 6.3e-19 97.4 61 67.2
AagrBONN_evm.TU.Sc2ySwM_344.3559 Anthoceros agrestis HOM05D006824 ORTHO05D008779 1.8e-18 95.9 81 55.6
HPP92_009935 Vanilla planifolia HOM05D006824 ORTHO05D008779 9.1e-18 93.6 64 65.6
Pp3c3_9990 Physcomitrium patens HOM05D006824 ORTHO05D008779 2.6e-17 92.0 81 46.9
MELO3C008753.2 Cucumis melo HOM05D006824 ORTHO05D008779 1.0e-16 90.1 52 71.2
MELO3C025302.2 Cucumis melo HOM05D006824 ORTHO05D008779 1.0e-16 90.1 52 71.2
SMO361G0474 Selaginella moellendorffii HOM05D006824 ORTHO05D008779 1.3e-16 89.7 83 45.8
Lj1g0017863 Lotus japonicus HOM05D006824 ORTHO05D008779 1.7e-16 89.4 53 67.9
Ciclev10012732m.g Citrus clementina HOM05D006824 ORTHO05D008779 2.9e-16 88.6 53 71.7
Nitab4.5_0009285g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 2.9e-16 88.6 80 52.5
MD04G1242000 Malus domestica HOM05D006824 ORTHO05D008779 5.0e-16 87.8 65 61.5
Cpa.g.sc123.9 Carica papaya HOM05D006824 ORTHO05D008779 6.5e-16 87.4 52 71.2
Ah.06g195550 Amaranthus hybridus HOM05D006824 ORTHO05D008779 1.5e-15 86.3 88 48.9
arahy.Tifrunner.gnm1.ann1.EIZA4A Arachis hypogaea HOM05D006824 ORTHO05D008779 5.5e-15 84.3 53 62.3
arahy.Tifrunner.gnm1.ann1.JEI8NT Arachis hypogaea HOM05D006824 ORTHO05D008779 1.0e-13 80.1 52 59.6
Nn1g09799 Nelumbo nucifera HOM05D006824 ORTHO05D008779 1.4e-13 79.7 57 63.2
ATR0263G001 Amborella trichopoda HOM05D006824 ORTHO05D008779 6.8e-13 77.4 67 52.2
Hund07329 Selenicereus undatus HOM05D006824 ORTHO05D008779 5.7e-12 74.3 65 50.8
PRCOL_00006210 Prasinoderma coloniale HOM05D006824 ORTHO05D008779 2.4e-10 68.9 70 45.7
SEGI_33071 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 3.1e-10 68.6 67 46.3
FAN09G1422 Fragaria x ananassa HOM05D001170 ORTHO05D002759 9.1e-10 67.0 54 53.7
Cre13.g563200 Chlamydomonas reinhardtii HOM05D006824 ORTHO05D008779 1.7e-08 62.8 79 36.7


User provided reference genes

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