Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 9.7e-83 310.1 153 100.0
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 8.5e-79 297.0 153 94.1
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 1.9e-78 295.8 153 94.8
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 2.1e-77 292.4 153 92.8
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 4.6e-77 291.2 151 92.1
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 1.4e-76 289.7 151 91.4
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 1.8e-76 289.3 153 90.8
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 2.3e-76 288.9 153 91.5
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 3.9e-76 288.1 152 90.1
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 1.5e-75 286.2 150 91.3
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 1.5e-75 286.2 150 91.3
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 3.3e-75 285.0 151 90.7
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 4.3e-75 284.6 151 90.7
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 5.7e-75 284.3 151 90.1
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 7.7e-72 273.9 169 81.1
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 5.7e-67 257.7 150 78.0
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 1.3e-66 256.5 153 79.7
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 2.2e-66 255.8 153 75.8
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 3.7e-66 255.0 148 81.1
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 6.3e-66 254.2 153 81.0
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.0e-64 249.2 153 74.5
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 7.7e-64 247.3 148 75.7
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 7.7e-64 247.3 153 74.5
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 1.0e-63 246.9 153 73.9
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 2.9e-63 245.4 150 72.7
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 2.9e-63 245.4 150 72.7
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 2.9e-63 245.4 153 72.5
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 2.9e-63 245.4 153 73.2
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 3.8e-63 245.0 151 72.8
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 3.8e-63 245.0 151 72.8
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 5.0e-63 244.6 153 73.2
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 5.0e-63 244.6 151 72.8
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 6.5e-63 244.2 153 71.9
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 6.5e-63 244.2 153 73.2
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 6.5e-63 244.2 153 74.5
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 8.5e-63 243.8 153 72.5
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 8.5e-63 243.8 150 73.3
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 8.5e-63 243.8 153 72.5
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 1.1e-62 243.4 151 72.8
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 1.1e-62 243.4 153 71.9
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 1.5e-62 243.0 153 71.2
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.9e-62 242.7 153 73.2
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 2.5e-62 242.3 153 71.9
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 2.5e-62 242.3 152 71.7
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 2.5e-62 242.3 153 71.9
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 3.2e-62 241.9 153 71.9
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.2e-62 241.9 153 71.9
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 4.2e-62 241.5 145 75.2
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 5.5e-62 241.1 153 73.2
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 9.4e-62 240.4 153 73.9
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 9.4e-62 240.4 153 70.6
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 9.4e-62 240.4 153 73.2
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 9.4e-62 240.4 153 72.5
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.6e-61 239.6 150 72.0
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.6e-61 239.6 150 72.0
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.6e-61 239.6 150 72.0
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 1.6e-61 239.6 153 70.6
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.6e-61 239.6 150 72.7
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 2.1e-61 239.2 153 71.2
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 2.1e-61 239.2 150 72.7
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.7e-61 238.8 151 72.8
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 3.6e-61 238.4 150 72.7
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 3.6e-61 238.4 153 70.6
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 4.7e-61 238.0 150 72.0
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 4.7e-61 238.0 153 69.9
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 4.7e-61 238.0 153 71.9
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 6.1e-61 237.7 150 73.3
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 6.1e-61 237.7 145 75.2
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 8.0e-61 237.3 150 71.3
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 8.0e-61 237.3 153 69.9
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 8.0e-61 237.3 153 70.6
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 1.8e-60 236.1 153 71.2
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 1.8e-60 236.1 153 68.6
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 1.8e-60 236.1 151 71.5
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 4.0e-60 235.0 131 87.8
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 6.7e-60 234.2 153 72.5
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 6.7e-60 234.2 153 70.6
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 6.7e-60 234.2 145 73.8
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 8.8e-60 233.8 150 68.0
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 1.1e-59 233.4 152 72.4
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 1.5e-59 233.0 153 68.6
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 1.5e-59 233.0 153 70.6
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 2.0e-59 232.6 153 69.9
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.0e-59 232.6 153 69.9
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.0e-59 232.6 150 70.7
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 2.0e-59 232.6 150 70.7
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 3.3e-59 231.9 150 68.7
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 4.4e-59 231.5 150 70.7
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 5.7e-59 231.1 153 69.9
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 5.7e-59 231.1 153 68.0
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 7.5e-59 230.7 153 64.7
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 7.5e-59 230.7 150 70.0
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 9.7e-59 230.3 150 65.3
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 9.7e-59 230.3 150 69.3
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 1.3e-58 229.9 153 69.3
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 1.7e-58 229.6 153 67.3
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 2.8e-58 228.8 150 68.7
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 2.8e-58 228.8 145 71.7
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 6.3e-58 227.6 153 67.3
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 8.2e-58 227.3 153 69.3
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 8.2e-58 227.3 153 66.0
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 1.1e-57 226.9 147 69.4
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.1e-57 226.9 155 67.1
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 1.1e-57 226.9 145 70.3
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 1.4e-57 226.5 150 68.7
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 1.4e-57 226.5 155 67.1
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.8e-57 226.1 148 66.9
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 2.4e-57 225.7 154 66.2
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 2.4e-57 225.7 153 70.6
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 2.4e-57 225.7 150 71.3
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 4.1e-57 224.9 152 67.1
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 7.0e-57 224.2 147 69.4
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.2e-56 223.4 152 66.4
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 1.6e-56 223.0 153 64.7
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 3.5e-56 221.9 148 70.9
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 3.5e-56 221.9 150 66.7
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.3e-55 219.9 152 66.4
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 5.0e-55 218.0 150 67.3
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 6.5e-55 217.6 151 66.9
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 6.5e-55 217.6 150 66.7
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.6e-53 213.0 149 63.8
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 4.0e-52 208.4 155 63.9
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.2e-51 206.8 155 62.6
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 8.3e-50 200.7 150 62.0
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 3.1e-49 198.7 145 59.3
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 9.1e-49 197.2 145 57.2
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 7.7e-48 194.1 142 61.3
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 8.5e-47 190.7 120 74.2
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 4.7e-45 184.9 121 70.2
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 6.1e-45 184.5 118 69.5
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.0e-44 183.7 152 56.6
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 1.4e-41 173.3 111 70.3
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 4.1e-41 171.8 145 51.0
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 2.0e-40 169.5 111 68.5
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 3.6e-37 158.7 179 48.0
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 2.9e-34 149.1 151 45.0
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.1e-33 147.1 94 72.3
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 1.4e-28 130.2 150 42.0
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 4.0e-28 128.6 78 75.6
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 2.0e-27 126.3 75 72.0
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.6e-27 125.9 99 56.6
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 4.4e-27 125.2 121 48.8
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 7.5e-27 124.4 75 74.7
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 7.0e-25 117.9 75 66.7
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 1.6e-24 116.7 75 68.0
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 3.0e-23 112.5 80 65.0
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 1.1e-22 110.5 89 58.4
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.9e-22 109.8 58 79.3
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.9e-22 109.8 58 79.3
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 2.5e-22 109.4 78 67.9
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 4.0e-20 102.1 145 35.2
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 4.4e-11 72.0 53 64.2
TAR383G0869 Trochodendron aralioides HOM05D005040 ORTHO05D005984 2.7e-08 62.8 61 59.0


User provided reference genes

Program Settings