Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR074360 Cardamine hirsuta HOM05D004379 ORTHO05D005186 2.9e-59 231.5 103 100.0
AT1G80133 Arabidopsis thaliana HOM05D004379 ORTHO05D005186 1.0e-43 179.9 103 77.7
AL2G41390 Arabidopsis lyrata HOM05D004379 ORTHO05D005186 1.9e-42 175.6 104 76.0
Thhalv10019808m.g Eutrema salsugineum HOM05D004379 ORTHO05D005186 2.2e-38 162.2 105 76.2
Carub.0002s2738 Capsella rubella HOM05D004379 ORTHO05D005186 3.7e-38 161.4 104 70.2
A02p23810 Brassica napus HOM05D004379 ORTHO05D005186 1.6e-36 156.0 103 68.0
BraA02t07372Z Brassica rapa HOM05D004379 ORTHO05D005186 1.6e-36 156.0 103 68.0
BolC2t09767H Brassica oleracea HOM05D004379 ORTHO05D005186 2.7e-36 155.2 103 69.9
C02p37550 Brassica napus HOM05D004379 ORTHO05D005186 1.0e-35 153.3 103 68.0
BcaB05g25296 Brassica carinata HOM05D004379 ORTHO05D005186 1.6e-28 129.4 71 71.8
Prupe.7G036700 Prunus persica HOM05D004379 ORTHO05D005186 3.2e-13 78.6 114 35.1
CiPaw.04G172300 Carya illinoinensis HOM05D004379 ORTHO05D005186 9.3e-13 77.0 111 41.4
Sed0018633 Sechium edule HOM05D004379 ORTHO05D005186 1.6e-12 76.3 88 42.0
FvH4_6g29870 Fragaria vesca HOM05D004379 ORTHO05D005186 4.6e-12 74.7 116 35.3
Haze_25560 Corylus avellana HOM05D004379 ORTHO05D005186 1.0e-11 73.6 112 39.3
Cfa003389 Carpinus fangiana HOM05D004379 ORTHO05D005186 1.3e-11 73.2 110 38.2
FAN14G0452 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.3e-11 73.2 116 34.5
Prupe.3G085300 Prunus persica HOM05D004379 ORTHO05D005186 1.3e-11 73.2 105 37.1
MD17G1210000 Malus domestica HOM05D004379 ORTHO05D005186 1.7e-11 72.8 114 34.2
Nn2g12051 Nelumbo nucifera HOM05D004379 ORTHO05D005186 1.7e-11 72.8 110 36.4
FAN05G0070 Fragaria x ananassa HOM05D004379 ORTHO05D005186 3.0e-11 72.0 124 34.7
Medtr4g010300 Medicago truncatula HOM05D004379 ORTHO05D005186 3.0e-11 72.0 114 36.0
TAR383G0091 Trochodendron aralioides HOM05D004379 ORTHO05D005186 3.0e-11 72.0 107 34.6
ClCG06G011240 Citrullus lanatus HOM05D004379 ORTHO05D005186 3.9e-11 71.6 76 46.1
QL05p029537 Quercus lobata HOM05D004379 ORTHO05D005186 3.9e-11 71.6 99 37.4
RcHm_v2.0_Chr2g0135761 Rosa chinensis HOM05D004379 ORTHO05D005186 3.9e-11 71.6 115 33.0
Sed0013123 Sechium edule HOM05D004379 ORTHO05D005186 3.9e-11 71.6 98 38.8
MSTRG.11136 Avicennia marina HOM05D004379 ORTHO05D005186 8.7e-11 70.5 99 34.3
Nn8g39475 Nelumbo nucifera HOM05D004379 ORTHO05D005186 8.7e-11 70.5 109 35.8
Potri.018G130700 Populus trichocarpa HOM05D004379 ORTHO05D005186 8.7e-11 70.5 96 37.5
Prupe.7G244400 Prunus persica HOM05D004379 ORTHO05D005186 8.7e-11 70.5 116 35.3
CsaV3_4G001570 Cucumis sativus L. HOM05D004379 ORTHO05D005186 1.5e-10 69.7 94 36.2
Psat7g256400 Pisum sativum HOM05D004379 ORTHO05D005186 1.9e-10 69.3 102 34.3
CSS0000383 Camellia sinensis var. sinensis HOM05D004379 ORTHO05D005186 2.5e-10 68.9 108 32.4
CANSAT56G1089 Cannabis sativa HOM05D004379 ORTHO05D005186 2.5e-10 68.9 97 34.0
FAN02G0226 Fragaria x ananassa HOM05D004379 ORTHO05D005186 2.5e-10 68.9 121 33.1
FAN17G1709 Fragaria x ananassa HOM05D004379 ORTHO05D005186 2.5e-10 68.9 121 33.1
Manes.14G121900 Manihot esculenta HOM05D004379 ORTHO05D005186 2.5e-10 68.9 97 35.1
Phvul.005G177700 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 2.5e-10 68.9 105 34.3
Sabra18G0111000 Salix brachista HOM05D001818 ORTHO05D001780 2.5e-10 68.9 96 36.5
Aqoxy7G03687 Aquilegia oxysepala HOM05D004379 ORTHO05D005186 3.3e-10 68.6 108 32.4
FAN09G2661 Fragaria x ananassa HOM05D004379 ORTHO05D005186 3.3e-10 68.6 99 34.3
Manes.11G055900 Manihot esculenta HOM05D004379 ORTHO05D005186 3.3e-10 68.6 83 39.8
MBI04_g29349_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 4.3e-10 68.2 75 36.0
MD15G1171700 Malus domestica HOM05D004379 ORTHO05D005186 4.3e-10 68.2 105 33.3
Psat5g302160 Pisum sativum HOM05D004379 ORTHO05D005186 4.3e-10 68.2 96 33.3
Thecc.06G022000 Theobroma cacao HOM05D004379 ORTHO05D005186 4.3e-10 68.2 104 33.7
EL10Ac9g21909 Beta vulgaris HOM05D004379 ORTHO05D005186 5.6e-10 67.8 111 33.3
Rhsim12G0191800 Rhododendron simsii HOM05D004379 ORTHO05D005186 5.6e-10 67.8 108 31.5
Cpa.g.sc10.259 Carica papaya HOM05D004379 ORTHO05D005186 7.3e-10 67.4 74 36.5
Ciclev10027032m.g Citrus clementina HOM05D004379 ORTHO05D005186 7.3e-10 67.4 103 35.0
Atru.chr1.2986 Acer truncatum HOM05D004379 ORTHO05D005186 9.6e-10 67.0 86 38.4
unitig_61.g26235 Utricularia gibba HOM05D004379 ORTHO05D005186 9.6e-10 67.0 98 37.8
arahy.Tifrunner.gnm1.ann1.WW0PRH Arachis hypogaea HOM05D004379 ORTHO05D005186 1.3e-09 66.6 67 44.8
CiPaw.03G245200 Carya illinoinensis HOM05D004379 ORTHO05D005186 1.3e-09 66.6 91 37.4
Duzib187G0465 Durio zibethinus HOM05D004379 ORTHO05D005186 1.3e-09 66.6 94 33.0
RcHm_v2.0_Chr2g0088241 Rosa chinensis HOM05D004379 ORTHO05D005186 1.3e-09 66.6 78 37.2
CiPaw.02G156500 Carya illinoinensis HOM05D004379 ORTHO05D005186 1.6e-09 66.2 91 37.4
CsaV3_1G030270 Cucumis sativus L. HOM05D004379 ORTHO05D005186 1.6e-09 66.2 78 41.0
Duzib235G0719 Durio zibethinus HOM05D004379 ORTHO05D005186 1.6e-09 66.2 119 32.8
Peaxi162Scf00046g00719 Petunia axillaris HOM05D004379 ORTHO05D005186 1.6e-09 66.2 95 32.6
QL02p088712 Quercus lobata HOM05D004379 ORTHO05D005186 1.6e-09 66.2 95 35.8
Sed0025536 Sechium edule HOM05D004379 ORTHO05D005186 1.6e-09 66.2 95 34.7
Duzib192G0219 Durio zibethinus HOM05D004379 ORTHO05D005186 2.1e-09 65.9 102 33.3
Hund06564 Selenicereus undatus HOM05D004379 ORTHO05D005186 2.1e-09 65.9 118 32.2
Ah.13g071700 Amaranthus hybridus HOM05D002122 ORTHO05D002205 2.8e-09 65.5 91 39.6
MELO3C017882.2 Cucumis melo HOM05D004379 ORTHO05D005186 2.8e-09 65.5 91 31.9
Duzib168G0259 Durio zibethinus HOM05D004379 ORTHO05D005186 2.8e-09 65.5 103 33.0
Glyma.02G235000 Glycine max HOM05D002122 ORTHO05D002205 2.8e-09 65.5 58 44.8
Lalb_Chr07g0179021 Lupinus albus HOM05D004379 ORTHO05D005186 2.8e-09 65.5 70 42.9
Lalb_Chr22g0350861 Lupinus albus HOM05D004379 ORTHO05D005186 2.8e-09 65.5 110 30.0
Medtr2g103780 Medicago truncatula HOM05D004379 ORTHO05D005186 2.8e-09 65.5 74 33.8
TPR.G38692 Trifolium pratense HOM05D004379 ORTHO05D005186 2.8e-09 65.5 99 35.4
Atru.chr7.1137 Acer truncatum HOM05D004379 ORTHO05D005186 3.6e-09 65.1 61 42.6
Glyma.17G113800 Glycine max HOM05D004379 ORTHO05D005186 3.6e-09 65.1 68 42.6
Migut.I00774 Erythranthe guttata HOM05D004379 ORTHO05D005186 4.8e-09 64.7 76 35.5
Glyma.07G030700 Glycine max HOM05D004379 ORTHO05D005186 4.8e-09 64.7 111 30.6
Glyma.15G008000 Glycine max HOM05D004379 ORTHO05D005186 4.8e-09 64.7 105 29.5
SalBow2G2996 Salvia bowleyana HOM05D004379 ORTHO05D005186 4.8e-09 64.7 95 32.6
Sed0015199 Sechium edule HOM05D004379 ORTHO05D005186 6.2e-09 64.3 97 33.0
VMungo0331G0688 Vigna mungo HOM05D004379 ORTHO05D005186 6.2e-09 64.3 115 32.2
Cc04_g04300 Coffea canephora HOM05D004379 ORTHO05D005186 8.1e-09 63.9 78 37.2
Lalb_Chr13g0301791 Lupinus albus HOM05D004379 ORTHO05D005186 8.1e-09 63.9 69 42.0
MBI01_g38638_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 8.1e-09 63.9 95 32.6
MBI04_g47848_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 8.1e-09 63.9 68 41.2
Solyc07g008205.1 Solanum lycopersicum HOM05D004379 ORTHO05D005186 8.1e-09 63.9 96 32.3
PGSC0003DMG400030926 Solanum tuberosum HOM05D004379 ORTHO05D005186 8.1e-09 63.9 96 32.3
TPR.G26481 Trifolium pratense HOM05D004379 ORTHO05D005186 8.1e-09 63.9 115 29.6
Actinidia08802 Actinidia chinensis HOM05D004379 ORTHO05D005186 1.1e-08 63.5 108 33.3
Ciclev10010639m.g Citrus clementina HOM05D004379 ORTHO05D005186 1.1e-08 63.5 73 37.0
CsaV3_7G032450 Cucumis sativus L. HOM05D004379 ORTHO05D005186 1.1e-08 63.5 78 34.6
Lj3g0013777 Lotus japonicus HOM05D004379 ORTHO05D005186 1.1e-08 63.5 97 34.0
MD02G1030200 Malus domestica HOM05D004379 ORTHO05D005186 1.1e-08 63.5 93 33.3
Nitab4.5_0007793g0030 Nicotiana tabacum HOM05D004379 ORTHO05D005186 1.1e-08 63.5 109 32.1
Peaxi162Scf00785g00321 Petunia axillaris HOM05D004379 ORTHO05D005186 1.1e-08 63.5 117 33.3
AUR62016345 Chenopodium quinoa HOM05D004379 ORTHO05D005186 1.4e-08 63.2 69 40.6
FvH4_1g03100 Fragaria vesca HOM05D004379 ORTHO05D005186 1.4e-08 63.2 106 33.0
FAN23G1202 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.4e-08 63.2 106 33.0
FAN23G2903 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.4e-08 63.2 106 33.0
FAN26G3437 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.4e-08 63.2 106 33.0
Thecc.09G128000 Theobroma cacao HOM05D004379 ORTHO05D005186 1.4e-08 63.2 79 36.7
VMungo1215G1478 Vigna mungo HOM05D004379 ORTHO05D005186 1.4e-08 63.2 79 40.5
arahy.Tifrunner.gnm1.ann1.4DH38B Arachis hypogaea HOM05D004379 ORTHO05D005186 1.8e-08 62.8 105 35.2
arahy.Tifrunner.gnm1.ann1.4K2N5B Arachis hypogaea HOM05D004379 ORTHO05D005186 1.8e-08 62.8 105 35.2
FAN28G1543 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.8e-08 62.8 106 32.1
arahy.Tifrunner.gnm1.ann1.131LTR Arachis hypogaea HOM05D004379 ORTHO05D005186 2.4e-08 62.4 116 31.9
CSS0024700 Camellia sinensis var. sinensis HOM05D004379 ORTHO05D005186 2.4e-08 62.4 80 32.5
ClCG07G012630 Citrullus lanatus HOM05D004379 ORTHO05D005186 2.4e-08 62.4 84 33.3
Gohir.D10G075800 Gossypium hirsutum HOM05D004379 ORTHO05D005186 2.4e-08 62.4 99 35.4
Gorai.011G083500 Gossypium raimondii HOM05D004379 ORTHO05D005186 2.4e-08 62.4 99 35.4
Hma1.2p1_0042F.1_g025560 Hydrangea macrophylla HOM05D004379 ORTHO05D005186 2.4e-08 62.4 72 38.9
Eucgr.C01743 Eucalyptus grandis HOM05D004379 ORTHO05D005186 3.1e-08 62.0 101 32.7
TPR.G37291 Trifolium pratense HOM05D004379 ORTHO05D005186 3.1e-08 62.0 81 33.3
Glyma.08G212100 Glycine max HOM05D004379 ORTHO05D005186 4.0e-08 61.6 112 31.2
Gohir.D05G016800 Gossypium hirsutum HOM05D004379 ORTHO05D005186 4.0e-08 61.6 91 29.7
Gorai.009G017000 Gossypium raimondii HOM05D004379 ORTHO05D005186 4.0e-08 61.6 91 29.7
Medtr4g114660 Medicago truncatula HOM05D004379 ORTHO05D005186 4.0e-08 61.6 115 29.6
PSO135G0759 Papaver somniferum HOM05D004379 ORTHO05D005186 4.0e-08 61.6 94 31.9
COL.COLO4_12954 Corchorus olitorius HOM05D004379 ORTHO05D005186 5.3e-08 61.2 70 40.0
Gohir.A05G015700 Gossypium hirsutum HOM05D004379 ORTHO05D005186 5.3e-08 61.2 90 28.9
PGR102G3274 Punica granatum HOM05D004379 ORTHO05D005186 6.9e-08 60.8 76 38.2
Sabra06G0050900 Salix brachista HOM05D004379 ORTHO05D005186 9.0e-08 60.5 67 37.3
MELO3C029250.2 Cucumis melo HOM05D004379 ORTHO05D005186 1.2e-07 60.1 79 31.6
Phvul.010G155400 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 1.2e-07 60.1 110 30.9
Sed0020577 Sechium edule HOM05D004379 ORTHO05D005186 1.2e-07 60.1 118 26.3
Gohir.A10G074000 Gossypium hirsutum HOM05D004379 ORTHO05D005186 1.5e-07 59.7 97 35.1
Rhsim08G0213700 Rhododendron simsii HOM05D004379 ORTHO05D005186 1.5e-07 59.7 70 37.1
SEGI_35416 Sequoiadendron giganteum HOM05D004379 ORTHO05D005186 1.5e-07 59.7 60 45.0
Solyc03g116650.3 Solanum lycopersicum HOM05D004379 ORTHO05D005186 1.5e-07 59.7 59 42.4
Actinidia15991 Actinidia chinensis HOM05D004379 ORTHO05D005186 2.0e-07 59.3 81 33.3
PSO724G0030 Papaver somniferum HOM05D004379 ORTHO05D005186 2.0e-07 59.3 105 27.6
Glyma.14G202900 Glycine max HOM05D002122 ORTHO05D002205 2.6e-07 58.9 57 38.6
Lsat_1_v5_gn_5_132021 Lactuca sativa HOM05D004379 ORTHO05D005186 2.6e-07 58.9 74 32.4
Lalb_Chr12g0197991 Lupinus albus HOM05D004379 ORTHO05D005186 2.6e-07 58.9 67 40.3
arahy.Tifrunner.gnm1.ann1.YHK00Y Arachis hypogaea HOM05D004379 ORTHO05D005186 3.4e-07 58.5 76 31.6
Cfa020793 Carpinus fangiana HOM05D002122 ORTHO05D002205 5.8e-07 57.8 62 38.7
ECA232G5025 Erigeron canadensis HOM05D000315 ORTHO05D001379 5.8e-07 57.8 84 34.5
TWI12G0794 Tripterygium wilfordii HOM05D004379 ORTHO05D005186 5.8e-07 57.8 84 26.2
MSTRG.9427 Avicennia marina HOM05D004379 ORTHO05D005186 7.6e-07 57.4 109 33.9
Eucgr.F03867 Eucalyptus grandis HOM05D004379 ORTHO05D005186 9.9e-07 57.0 111 28.8
Lj4g0010177 Lotus japonicus HOM05D004379 ORTHO05D005186 9.9e-07 57.0 71 38.0
Nitab4.5_0001597g0040 Nicotiana tabacum HOM05D004379 ORTHO05D005186 9.9e-07 57.0 107 29.9
SalBow6G6427 Salvia bowleyana HOM05D004379 ORTHO05D005186 9.9e-07 57.0 65 36.9
DCAR_014889 Daucus carota HOM05D004379 ORTHO05D005186 1.3e-06 56.6 91 31.9
HanXRQChr12g0361431 Helianthus annuus HOM05D004379 ORTHO05D005186 1.3e-06 56.6 68 35.3
PSO339G4098 Papaver somniferum HOM05D004379 ORTHO05D005186 1.3e-06 56.6 73 32.9
Phvul.003G165600 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 1.3e-06 56.6 94 34.0
unitig_0.g1118 Utricularia gibba HOM05D004379 ORTHO05D005186 1.3e-06 56.6 95 33.7
CiPaw.05G017400 Carya illinoinensis HOM05D002122 ORTHO05D002205 1.7e-06 56.2 73 37.0
Migut.L00146 Erythranthe guttata HOM05D001149 ORTHO05D000970 1.7e-06 56.2 106 32.1
HanXRQChr06g0169201 Helianthus annuus HOM05D004379 ORTHO05D005186 1.7e-06 56.2 97 29.9
unitig_744.g24019 Utricularia gibba HOM05D004379 ORTHO05D005186 1.7e-06 56.2 109 32.1
Migut.D01070 Erythranthe guttata HOM05D004379 ORTHO05D005186 2.2e-06 55.8 122 28.7
Eucgr.L02713 Eucalyptus grandis HOM05D004379 ORTHO05D005186 2.2e-06 55.8 111 28.8
Sc07g0000260 Simmondsia chinensis HOM05D001149 ORTHO05D000970 2.2e-06 55.8 100 31.0
THA.LOC104800783 Tarenaya hassleriana HOM05D002122 ORTHO05D002205 2.2e-06 55.8 87 33.3
Lalb_Chr04g0262391 Lupinus albus HOM05D004379 ORTHO05D005186 2.9e-06 55.5 69 31.9
Sed0016032 Sechium edule HOM05D004379 ORTHO05D005186 2.9e-06 55.5 62 32.3
SEGI_34139 Sequoiadendron giganteum HOM05D001149 ORTHO05D000970 2.9e-06 55.5 77 37.7
Glyma.01G242700 Glycine max HOM05D002122 ORTHO05D002205 3.8e-06 55.1 66 33.3
Nitab4.5_0000321g0260 Nicotiana tabacum HOM05D002122 ORTHO05D002205 3.8e-06 55.1 57 38.6
Solyc08g015940.3 Solanum lycopersicum HOM05D004379 ORTHO05D005186 3.8e-06 55.1 61 39.3
ClCG09G002880 Citrullus lanatus HOM05D004379 ORTHO05D005186 4.9e-06 54.7 67 31.3
COL.COLO4_18855 Corchorus olitorius HOM05D004379 ORTHO05D005186 4.9e-06 54.7 70 34.3
Nitab4.5_0006708g0030 Nicotiana tabacum HOM05D004379 ORTHO05D005186 4.9e-06 54.7 102 28.4
Lalb_Chr04g0263751 Lupinus albus HOM05D002122 ORTHO05D002205 6.4e-06 54.3 65 32.3
Phvul.002G051900 Phaseolus vulgaris HOM05D002122 ORTHO05D002205 6.4e-06 54.3 58 37.9
Sed0016933 Sechium edule HOM05D002122 ORTHO05D002205 6.4e-06 54.3 92 33.7
HPP92_025123 Vanilla planifolia HOM05D002122 ORTHO05D002205 6.4e-06 54.3 62 40.3
DCAR_027242 Daucus carota HOM05D002122 ORTHO05D002205 8.4e-06 53.9 57 38.6
VMungo1215G2893 Vigna mungo HOM05D002122 ORTHO05D002205 8.4e-06 53.9 58 37.9


User provided reference genes

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