Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR073610 Cardamine hirsuta HOM05D007259 ORTHO05D009158 1.3e-93 346.3 164 100.0
AL2G40530 Arabidopsis lyrata HOM05D007259 ORTHO05D009158 3.9e-90 334.7 164 95.7
Carub.0002s2668 Capsella rubella HOM05D007259 ORTHO05D009158 1.8e-87 325.9 165 93.9
Thhalv10019243m.g Eutrema salsugineum HOM05D007259 ORTHO05D009158 3.1e-87 325.1 165 93.3
BcaB05g25221 Brassica carinata HOM05D007259 ORTHO05D009158 5.3e-87 324.3 165 92.7
Sp5g34900 Schrenkiella parvula HOM05D007259 ORTHO05D009158 5.3e-87 324.3 165 93.9
BcaC03g15926 Brassica carinata HOM05D007259 ORTHO05D009158 2.6e-86 322.0 165 92.1
BolC2t09700H Brassica oleracea HOM05D007259 ORTHO05D009158 2.6e-86 322.0 165 92.1
AT1G80860 Arabidopsis thaliana HOM05D007259 ORTHO05D009158 5.9e-86 320.9 165 92.1
C02p36870 Brassica napus HOM05D007259 ORTHO05D009158 5.9e-86 320.9 165 91.5
A02p23100 Brassica napus HOM05D007259 ORTHO05D009158 2.2e-85 318.9 165 91.5
BraA02t07308Z Brassica rapa HOM05D007259 ORTHO05D009158 2.2e-85 318.9 165 91.5
Aa31LG4G1140 Aethionema arabicum HOM05D007259 ORTHO05D009158 8.5e-85 317.0 164 90.2
THA.LOC104812409 Tarenaya hassleriana HOM05D007259 ORTHO05D009158 2.4e-79 298.9 165 85.5
PGR102G1952 Punica granatum HOM05D007259 ORTHO05D009158 4.5e-78 294.7 165 83.6
TWI75G0585 Tripterygium wilfordii HOM05D007259 ORTHO05D009158 2.9e-77 292.0 165 81.8
Cfa001880 Carpinus fangiana HOM05D007259 ORTHO05D009158 9.4e-76 287.0 165 79.4
Rhsim08G0205600 Rhododendron simsii HOM05D007259 ORTHO05D009158 2.7e-75 285.4 163 80.4
Potri.001G044200 Populus trichocarpa HOM05D007259 ORTHO05D009158 4.7e-75 284.6 165 77.6
QL05p036089 Quercus lobata HOM05D007259 ORTHO05D009158 4.7e-75 284.6 166 80.7
CANSAT56G1631 Cannabis sativa HOM05D007259 ORTHO05D009158 6.1e-75 284.3 165 79.4
GSVIVG01015956001 Vitis vinifera HOM05D007259 ORTHO05D009158 6.1e-75 284.3 165 80.6
Actinidia36875 Actinidia chinensis HOM05D007259 ORTHO05D009158 8.0e-75 283.9 163 81.0
Sabra01G0030500 Salix brachista HOM05D007259 ORTHO05D009158 1.0e-74 283.5 165 78.2
Eucgr.F03958 Eucalyptus grandis HOM05D007259 ORTHO05D009158 1.4e-74 283.1 165 78.2
Gohir.D06G118700 Gossypium hirsutum HOM05D007259 ORTHO05D009158 2.3e-74 282.3 165 80.6
PSO170G4635 Papaver somniferum HOM05D007259 ORTHO05D009158 2.3e-74 282.3 166 78.9
Duzib235G0063 Durio zibethinus HOM05D007259 ORTHO05D009158 3.0e-74 282.0 165 80.6
Gohir.A06G114200 Gossypium hirsutum HOM05D007259 ORTHO05D009158 3.9e-74 281.6 165 80.6
Sc12g0008330 Simmondsia chinensis HOM05D007259 ORTHO05D009158 5.2e-74 281.2 162 77.8
Gorai.010G136500 Gossypium raimondii HOM05D007259 ORTHO05D009158 6.7e-74 280.8 165 80.0
Dinv21412 Davidia involucrata HOM05D007259 ORTHO05D009158 1.1e-73 280.0 165 78.8
PSO017G0751 Papaver somniferum HOM05D007259 ORTHO05D009158 1.1e-73 280.0 166 78.9
Manes.04G102300 Manihot esculenta HOM05D007259 ORTHO05D009158 3.3e-73 278.5 165 80.0
RcHm_v2.0_Chr2g0132951 Rosa chinensis HOM05D007259 ORTHO05D009158 3.3e-73 278.5 165 78.2
Hund00433 Selenicereus undatus HOM05D007259 ORTHO05D009158 3.3e-73 278.5 165 79.4
Ciclev10026584m.g Citrus clementina HOM05D007259 ORTHO05D009158 5.7e-73 277.7 165 77.6
FvH4_6g28630 Fragaria vesca HOM05D007259 ORTHO05D009158 5.7e-73 277.7 165 77.6
FAN14G4954 Fragaria x ananassa HOM05D007259 ORTHO05D009158 5.7e-73 277.7 165 77.6
VMungo0331G0163 Vigna mungo HOM05D007259 ORTHO05D009158 7.4e-73 277.3 163 81.0
EL10Ac9g22206 Beta vulgaris HOM05D007259 ORTHO05D009158 1.7e-72 276.2 166 75.3
Thecc.06G041800 Theobroma cacao HOM05D007259 ORTHO05D009158 1.7e-72 276.2 165 78.8
CAN.G1932.2 Capsicum annuum HOM05D007259 ORTHO05D009158 2.2e-72 275.8 165 78.2
BcaB05g25224 Brassica carinata HOM05D007259 ORTHO05D009158 2.8e-72 275.4 165 83.0
Ah.01g006970 Amaranthus hybridus HOM05D007259 ORTHO05D009158 4.8e-72 274.6 161 78.3
FAN05G5272 Fragaria x ananassa HOM05D007259 ORTHO05D009158 2.4e-71 272.3 165 75.8
TPR.G23079 Trifolium pratense HOM05D007259 ORTHO05D009158 2.4e-71 272.3 165 78.2
Atru.chr10.2413 Acer truncatum HOM05D007259 ORTHO05D009158 3.1e-71 271.9 165 74.5
CiPaw.01G254600 Carya illinoinensis HOM05D007259 ORTHO05D009158 3.1e-71 271.9 165 77.0
Lj3g0012869 Lotus japonicus HOM05D007259 ORTHO05D009158 4.1e-71 271.6 161 78.3
Medtr4g007095 Medicago truncatula HOM05D007259 ORTHO05D009158 5.3e-71 271.2 165 78.2
Lsat_1_v5_gn_5_8261 Lactuca sativa HOM05D007259 ORTHO05D009158 7.0e-71 270.8 165 74.5
Peaxi162Scf00207g00430 Petunia axillaris HOM05D007259 ORTHO05D009158 7.0e-71 270.8 165 75.8
CSS0004525 Camellia sinensis var. sinensis HOM05D007259 ORTHO05D009158 9.1e-71 270.4 163 76.7
Prupe.3G098300 Prunus persica HOM05D007259 ORTHO05D009158 9.1e-71 270.4 165 76.4
Cc04_g05120 Coffea canephora HOM05D007259 ORTHO05D009158 1.2e-70 270.0 165 73.9
HanXRQChr05g0153761 Helianthus annuus HOM05D007259 ORTHO05D009158 2.6e-70 268.9 165 74.5
Lj5A81T88 Lonicera japonica HOM05D007259 ORTHO05D009158 2.6e-70 268.9 165 74.5
Lalb_Chr01g0012071 Lupinus albus HOM05D007259 ORTHO05D009158 3.5e-70 268.5 163 77.3
TPR.G23090 Trifolium pratense HOM05D007259 ORTHO05D009158 3.5e-70 268.5 165 78.2
Oeu060130.1 Olea europaea HOM05D007259 ORTHO05D009158 1.0e-69 266.9 165 75.2
Solyc06g068470.3 Solanum lycopersicum HOM05D007259 ORTHO05D009158 1.7e-69 266.2 165 75.2
Sopen06g025720 Solanum pennellii HOM05D007259 ORTHO05D009158 2.2e-69 265.8 165 75.8
Glyma.08G218900 Glycine max HOM05D007259 ORTHO05D009158 2.9e-69 265.4 166 77.7
Phvul.010G161400 Phaseolus vulgaris HOM05D007259 ORTHO05D009158 2.9e-69 265.4 163 77.3
Medtr4g007090 Medicago truncatula HOM05D007259 ORTHO05D009158 5.0e-69 264.6 165 76.4
ClCG10G012930 Citrullus lanatus HOM05D007259 ORTHO05D009158 8.5e-69 263.8 165 75.2
Psat7g260280 Pisum sativum HOM05D007259 ORTHO05D009158 8.5e-69 263.8 156 78.2
Nn8g39898 Nelumbo nucifera HOM05D007259 ORTHO05D009158 1.1e-68 263.5 165 73.9
FAN09G1653 Fragaria x ananassa HOM05D007259 ORTHO05D009158 1.5e-68 263.1 164 75.0
PGSC0003DMG400028490 Solanum tuberosum HOM05D007259 ORTHO05D009158 7.2e-68 260.8 165 73.9
SGA_v2.0_scaffold26G11300 Striga asiatica HOM05D007259 ORTHO05D009158 7.2e-68 260.8 163 74.8
SalBow6G4962 Salvia bowleyana HOM05D007259 ORTHO05D009158 4.7e-67 258.1 164 72.6
MSTRG.4677 Avicennia marina HOM05D007259 ORTHO05D009158 1.0e-66 256.9 165 74.5
CsaV3_3G032790 Cucumis sativus L. HOM05D007259 ORTHO05D009158 1.4e-66 256.5 165 73.3
Migut.D01126 Erythranthe guttata HOM05D007259 ORTHO05D009158 3.0e-66 255.4 163 74.2
MBI15_g08512_MAGBIO Magnolia biondii HOM05D007259 ORTHO05D009158 7.5e-65 250.8 160 69.4
Sed0006537 Sechium edule HOM05D007259 ORTHO05D009158 9.7e-65 250.4 165 72.7
Os02g0612100 Oryza sativa ssp. japonica HOM05D007259 ORTHO05D009158 1.1e-63 246.9 164 73.2
Nitab4.5_0008962g0030 Nicotiana tabacum HOM05D007259 ORTHO05D009158 2.0e-62 242.7 144 77.8
Zm00001eb184520 Zea mays HOM05D007259 ORTHO05D009158 2.2e-61 239.2 161 69.6
Haze_16667 Corylus avellana HOM05D007259 ORTHO05D009158 1.9e-60 236.1 262 49.6
unitig_60.g25615 Utricularia gibba HOM05D007259 ORTHO05D009158 8.0e-59 230.7 202 57.9
CDE12G0386 Ceratophyllum demersum HOM05D007259 ORTHO05D009158 2.7e-54 215.7 139 70.5
ECA246G0776 Erigeron canadensis HOM05D007259 ORTHO05D009158 1.7e-53 213.0 126 79.4
HPP92_010735 Vanilla planifolia HOM05D007259 ORTHO05D009158 6.5e-53 211.1 155 62.6
AagrBONN_evm.TU.Sc2ySwM_117.1157 Anthoceros agrestis HOM05D007259 ORTHO05D009158 8.6e-53 210.7 157 62.4
SMO141G0127 Selaginella moellendorffii HOM05D007259 ORTHO05D009158 2.5e-52 209.1 159 62.9
Potri.003G182400 Populus trichocarpa HOM05D007259 ORTHO05D009158 7.2e-52 207.6 117 82.1
SEGI_39537 Sequoiadendron giganteum HOM05D007259 ORTHO05D009158 3.0e-50 202.2 154 59.1
Pp3c6_3720 Physcomitrium patens HOM05D007259 ORTHO05D009158 4.0e-50 201.8 163 58.9
DCAR_021369 Daucus carota HOM05D007259 ORTHO05D009158 1.8e-47 193.0 116 80.2
Glyma.07G022900 Glycine max HOM05D007259 ORTHO05D009158 3.0e-37 159.1 84 88.1
vmacro19057 Vaccinium macrocarpon HOM05D007259 ORTHO05D009158 3.1e-34 149.1 82 82.9
MD17G1223400 Malus domestica HOM05D007259 ORTHO05D009158 2.6e-33 146.0 83 78.3
Aqoxy2G00331 Aquilegia oxysepala HOM05D001307 ORTHO05D001158 1.4e-31 140.2 91 71.4
Cpa.g.sc10.78 Carica papaya HOM05D007259 ORTHO05D009158 1.4e-31 140.2 82 75.6
ATR0739G058 Amborella trichopoda HOM05D007259 ORTHO05D009158 2.4e-31 139.4 87 74.7
FAN02G2583 Fragaria x ananassa HOM05D007259 ORTHO05D009158 3.0e-29 132.5 82 73.2
MD17G1223600 Malus domestica HOM05D007259 ORTHO05D009158 3.0e-29 132.5 83 72.3
Nitab4.5_0000886g0050 Nicotiana tabacum HOM05D007259 ORTHO05D009158 1.5e-28 130.2 91 65.9
HPP92_010738 Vanilla planifolia HOM05D007259 ORTHO05D009158 4.3e-28 128.6 93 64.5
Lj5C80T7 Lonicera japonica HOM05D007259 ORTHO05D009158 4.0e-26 122.1 82 68.3
MELO3C026739.2 Cucumis melo HOM05D007259 ORTHO05D009158 1.3e-24 117.1 82 67.1
SalBow8G2481 Salvia bowleyana HOM05D007259 ORTHO05D009158 4.2e-15 85.5 54 75.9
COL.COLO4_26703 Corchorus olitorius HOM05D007259 ORTHO05D009158 5.2e-10 68.6 43 79.1


User provided reference genes

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