Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 0.0e+00 1550.4 775 100.0
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 0.0e+00 1469.1 775 94.2
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1460.3 777 93.1
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1459.5 775 92.9
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1459.1 777 92.9
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 0.0e+00 1455.7 775 92.6
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1452.6 777 92.4
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1452.6 777 92.5
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 0.0e+00 1449.5 775 92.4
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1448.3 775 92.1
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 0.0e+00 1435.6 775 91.2
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 0.0e+00 1427.2 775 90.7
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1416.4 775 90.2
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1394.8 775 89.0
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1380.2 785 87.5
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 0.0e+00 1349.0 778 86.8
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1349.0 773 85.0
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1337.0 785 85.1
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1336.6 783 85.6
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1327.8 788 84.9
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1217.2 784 77.7
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 0.0e+00 1204.5 771 74.4
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1201.0 763 75.9
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1198.7 763 75.6
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 0.0e+00 1197.6 771 74.2
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1196.8 763 75.6
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 0.0e+00 1195.3 773 74.4
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1194.1 771 74.1
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 0.0e+00 1186.4 773 73.6
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 0.0e+00 1177.9 771 73.8
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1177.2 808 70.7
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1175.6 812 70.6
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 0.0e+00 1173.3 772 72.5
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1171.8 771 72.5
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 0.0e+00 1169.8 771 72.4
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 0.0e+00 1169.8 773 72.7
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 0.0e+00 1169.5 772 72.2
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 0.0e+00 1168.7 811 69.9
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 0.0e+00 1164.4 779 72.9
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 0.0e+00 1163.3 771 73.0
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 0.0e+00 1161.7 776 72.7
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 0.0e+00 1160.2 778 72.2
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 0.0e+00 1157.1 773 72.2
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 0.0e+00 1154.4 774 71.8
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 0.0e+00 1153.3 775 71.5
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 0.0e+00 1150.6 773 71.7
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1149.8 772 71.9
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 0.0e+00 1148.7 773 71.9
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1147.5 772 71.9
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 0.0e+00 1145.2 771 71.9
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 0.0e+00 1144.8 757 72.9
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 0.0e+00 1142.5 773 71.9
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 0.0e+00 1141.3 773 70.9
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 0.0e+00 1137.9 771 71.5
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1137.5 773 71.0
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1134.8 774 70.5
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 0.0e+00 1134.4 771 71.2
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 0.0e+00 1132.5 771 70.3
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 0.0e+00 1129.0 756 72.4
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 0.0e+00 1127.1 771 71.6
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1125.9 771 71.1
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 0.0e+00 1125.9 773 70.1
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 0.0e+00 1125.5 771 70.7
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 0.0e+00 1122.5 774 69.9
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1120.1 757 71.1
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 0.0e+00 1120.1 751 71.1
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1115.5 772 70.3
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1113.6 772 69.4
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 0.0e+00 1113.6 773 69.5
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1110.5 771 68.6
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1109.7 759 70.8
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 0.0e+00 1107.4 770 69.4
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1102.0 773 70.0
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1101.3 772 68.9
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 0.0e+00 1099.0 884 62.7
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1098.6 771 68.2
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 0.0e+00 1089.7 776 68.3
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1087.4 770 68.4
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1085.1 771 69.0
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 0.0e+00 1083.6 761 68.2
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 0.0e+00 1080.9 771 68.6
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 2.7e-311 1071.6 770 67.4
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 2.4e-307 1058.5 783 66.3
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 3.2e-307 1058.1 772 66.7
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 9.6e-304 1046.6 773 66.0
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 2.1e-303 1045.4 750 66.9
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 5.4e-299 1030.8 778 65.3
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 5.1e-297 1024.2 676 72.9
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 1.6e-295 1019.2 697 71.0
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 8.4e-292 1006.9 757 65.5
SGA_v2.0_scaffold121G33058 Striga asiatica HOM05D004228 ORTHO05D005137 9.3e-291 1003.4 786 63.9
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 3.9e-289 998.0 777 65.0
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 3.7e-287 991.5 691 69.8
Eucgr.J03134 Eucalyptus grandis HOM05D004228 ORTHO05D005137 2.0e-285 985.7 666 71.9
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 1.4e-283 979.5 771 63.4
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 2.3e-281 972.2 734 66.2
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 4.8e-279 964.5 743 64.6
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 7.6e-277 957.2 746 62.5
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 2.5e-275 952.2 766 64.0
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 3.9e-273 944.9 768 61.1
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 9.0e-270 933.7 770 58.4
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 3.4e-269 931.8 763 60.9
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 7.9e-266 920.6 748 63.6
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 3.7e-247 858.6 702 60.7
Nitab4.5_0002244g0120 Nicotiana tabacum HOM05D004228 ORTHO05D005137 2.4e-246 855.9 633 66.7
Nitab4.5_0000030g0500 Nicotiana tabacum HOM05D004228 ORTHO05D005137 7.0e-246 854.4 661 64.0
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 6.5e-236 821.2 646 62.7
Lsat_1_v5_gn_0_21260 Lactuca sativa HOM05D004228 ORTHO05D005137 1.6e-234 816.6 663 61.1
Manes.11G069700 Manihot esculenta HOM05D004228 ORTHO05D005137 8.0e-234 814.3 554 70.6
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 3.4e-232 808.9 561 68.6
Hma1.2p1_0338F.1_g129690 Hydrangea macrophylla HOM05D004228 ORTHO05D005137 6.4e-215 751.5 509 70.9
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 3.5e-213 745.7 768 52.1
Oeu057157.1 Olea europaea HOM05D004228 ORTHO05D005137 9.9e-184 647.9 443 70.7
arahy.Tifrunner.gnm1.ann1.W5V7W0 Arachis hypogaea HOM05D004228 ORTHO05D005137 5.3e-177 625.5 444 68.2
PSO017G2203 Papaver somniferum HOM05D004228 ORTHO05D005137 2.0e-144 517.3 350 69.7
PSO017G5477 Papaver somniferum HOM05D004228 ORTHO05D005137 7.7e-144 515.4 372 68.5
MBI14_g16439_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 7.2e-134 482.3 610 45.9
SEGI_32687 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 2.2e-114 417.5 346 59.2
COL.COLO4_26790 Corchorus olitorius HOM05D004228 ORTHO05D005137 8.3e-114 415.6 274 72.6
Cpa.g.sc167.19 Carica papaya HOM05D004228 ORTHO05D005137 2.6e-99 367.5 249 69.5
Lsat_1_v5_gn_3_49001 Lactuca sativa HOM05D004228 ORTHO05D005137 9.5e-86 322.4 250 61.2
COL.COLO4_26791 Corchorus olitorius HOM05D004228 ORTHO05D005137 9.9e-75 285.8 358 46.1
MD09G1228800 Malus domestica HOM05D004228 ORTHO05D005137 1.6e-69 268.5 266 52.6
RcHm_v2.0_Chr2g0132171 Rosa chinensis HOM05D004228 ORTHO05D005137 3.6e-69 267.3 260 57.7
MBI14_g16438_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 1.8e-68 265.0 183 66.7
MD00G1188200 Malus domestica HOM05D004228 ORTHO05D005137 5.1e-63 246.9 252 52.0
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 3.3e-62 244.2 211 61.6
Gorai.007G245800 Gossypium raimondii HOM05D004228 ORTHO05D005137 3.6e-61 240.7 154 74.0
CBR_g49119 Chara braunii HOM05D004228 ORTHO05D005137 4.8e-61 240.4 225 53.8
Gorai.008G198300 Gossypium raimondii HOM05D004228 ORTHO05D005137 9.9e-59 232.6 137 78.8
Gohir.D12G184901 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.1e-56 224.9 137 75.9
CBR_g49120 Chara braunii HOM05D000019 ORTHO05D000002 9.6e-46 189.5 207 50.2
CBR_g49132 Chara braunii HOM05D004228 ORTHO05D005137 3.1e-44 184.5 149 61.1
Nitab4.5_0000030g0490 Nicotiana tabacum HOM05D004228 ORTHO05D005137 4.5e-43 180.6 105 80.0
Nitab4.5_0002244g0110 Nicotiana tabacum HOM05D004228 ORTHO05D005137 3.8e-42 177.6 108 76.9
Gorai.006G048700 Gossypium raimondii HOM05D004228 ORTHO05D005137 6.5e-42 176.8 105 77.1
Cfa001845 Carpinus fangiana HOM05D004228 ORTHO05D005137 2.5e-41 174.9 119 68.9
Oeu057158.1 Olea europaea HOM05D004228 ORTHO05D005137 3.2e-41 174.5 105 73.3
Glyma.20G046501 Glycine max HOM05D004228 ORTHO05D005137 4.6e-40 170.6 149 59.1
SEGI_17966 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 3.9e-39 167.5 118 66.1
SEGI_04747 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 5.3e-36 157.1 108 63.9
SEGI_21553 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 7.7e-35 153.3 91 76.9
FAN02G0140 Fragaria x ananassa HOM05D004228 ORTHO05D005137 1.7e-34 152.1 87 79.3
Glyma.20G046401 Glycine max HOM05D004228 ORTHO05D005137 2.9e-34 151.4 93 77.4
CBR_g49131 Chara braunii HOM05D007088 ORTHO05D008477 3.9e-31 141.0 96 66.7
MD09G1229100 Malus domestica HOM05D004228 ORTHO05D005137 7.4e-30 136.7 85 70.6
Gorai.002G214900 Gossypium raimondii HOM05D004228 ORTHO05D005137 3.7e-29 134.4 79 75.9
Gohir.A06G076350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 3.1e-28 131.3 98 66.3
Gohir.D02G099801 Gossypium hirsutum HOM05D004228 ORTHO05D005137 3.1e-28 131.3 98 66.3
Gohir.A07G034550 Gossypium hirsutum HOM05D004228 ORTHO05D005137 6.9e-28 130.2 98 65.3
Gohir.A05G304350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.2e-27 129.4 83 72.3
CDE02G2004 Ceratophyllum demersum HOM05D004228 ORTHO05D005137 4.5e-27 127.5 95 65.3
Gohir.D13G121066 Gossypium hirsutum HOM05D004228 ORTHO05D005137 8.5e-26 123.2 79 68.4
Gohir.D09G001001 Gossypium hirsutum HOM05D004228 ORTHO05D005137 8.8e-23 113.2 214 35.5
SEGI_15998 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.5e-22 112.5 124 50.0
MCO12G087 Micromonas commoda HOM05D004228 ORTHO05D005137 2.8e-21 108.2 163 40.5
Gorai.009G406300 Gossypium raimondii HOM05D004228 ORTHO05D005137 6.3e-21 107.1 214 34.6
MD00G1188000 Malus domestica HOM05D004228 ORTHO05D005137 4.1e-20 104.4 76 60.5
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 3.5e-19 101.3 170 41.2
Actinidia00024 Actinidia chinensis HOM05D000639 ORTHO05D019441 2.0e-14 85.5 77 57.1
Gohir.A11G044150 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.4e-12 79.3 51 70.6
MBI14_g16442_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 2.7e-11 75.1 45 75.6
Cre08.g381800 Chlamydomonas reinhardtii HOM05D004228 ORTHO05D005137 4.5e-11 74.3 168 33.3
Lsat_1_v5_gn_4_114980 Lactuca sativa HOM05D004228 ORTHO05D005137 1.5e-09 69.3 59 61.0
Cpa.g.sc167.21 Carica papaya HOM05D004228 ORTHO05D043558 1.9e-09 68.9 37 70.3
BraA06t24594Z Brassica rapa HOM05D004228 ORTHO05D005137 3.2e-09 68.2 41 82.9
arahy.Tifrunner.gnm1.ann1.W3R70Z Arachis hypogaea HOM05D004228 ORTHO05D005137 4.4e-06 57.8 50 60.0


User provided reference genes

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