Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR073260 Cardamine hirsuta HOM05D002759 ORTHO05D003290 2.5e-124 448.7 222 100.0
CARHR230000 Cardamine hirsuta HOM05D002759 ORTHO05D003290 1.3e-91 340.1 186 91.9
AL7G30550 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 1.8e-85 319.7 185 87.6
Carub.0007s1830 Capsella rubella HOM05D002759 ORTHO05D003290 1.3e-83 313.5 185 84.9
AT4G22970 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 2.6e-81 305.8 185 83.2
BolC7t45725H Brassica oleracea HOM05D002759 ORTHO05D003290 2.6e-81 305.8 189 83.6
Thhalv10024187m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 3.5e-81 305.4 182 85.2
Sp7g21060 Schrenkiella parvula HOM05D002759 ORTHO05D003290 7.7e-81 304.3 188 83.5
C07p52320 Brassica napus HOM05D002759 ORTHO05D003290 1.3e-80 303.5 189 82.5
BcaC09g51048 Brassica carinata HOM05D002759 ORTHO05D003290 2.2e-80 302.8 188 83.0
C01p17510 Brassica napus HOM05D002759 ORTHO05D003290 2.2e-80 302.8 188 82.4
BolC1t01691H Brassica oleracea HOM05D002759 ORTHO05D003290 2.2e-80 302.8 188 83.0
A01p14240 Brassica napus HOM05D002759 ORTHO05D003290 1.1e-79 300.4 188 82.4
A03p53910 Brassica napus HOM05D002759 ORTHO05D003290 3.2e-79 298.9 189 81.5
BraA03t14460Z Brassica rapa HOM05D002759 ORTHO05D003290 3.2e-79 298.9 189 81.5
BraA01t01371Z Brassica rapa HOM05D002759 ORTHO05D003290 2.1e-78 296.2 186 82.8
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 2.6e-76 289.3 182 80.8
BcaNung01007 Brassica carinata HOM05D002759 ORTHO05D003290 2.7e-73 279.3 202 75.7
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 1.7e-56 223.4 187 63.6
arahy.Tifrunner.gnm1.ann1.YVTC7U Arachis hypogaea HOM05D002759 ORTHO05D003290 9.8e-52 207.6 181 58.6
arahy.Tifrunner.gnm1.ann1.VDG0KY Arachis hypogaea HOM05D002759 ORTHO05D003290 3.7e-51 205.7 181 58.0
Phvul.006G212401 Phaseolus vulgaris HOM05D002759 ORTHO05D003290 6.4e-51 204.9 181 62.4
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 1.8e-50 203.4 179 59.2
Glyma.15G048100 Glycine max HOM05D002759 ORTHO05D003290 3.2e-50 202.6 181 59.1
Glyma.08G184200 Glycine max HOM05D002759 ORTHO05D003290 7.0e-50 201.4 181 59.1
Lj1g0017629 Lotus japonicus HOM05D002759 ORTHO05D003290 9.2e-50 201.1 181 61.3
Lj6g0007416 Lotus japonicus HOM05D002759 ORTHO05D003290 2.7e-49 199.5 181 60.8
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 3.5e-49 199.1 182 57.1
CANSAT11G0811 Cannabis sativa HOM05D002759 ORTHO05D003290 5.9e-49 198.4 181 58.6
Lalb_Chr20g0123401 Lupinus albus HOM05D002759 ORTHO05D003290 5.9e-49 198.4 181 58.0
Cfa017189 Carpinus fangiana HOM05D002759 ORTHO05D003290 2.3e-48 196.4 181 55.2
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 3.0e-48 196.1 181 57.5
Medtr2g007790 Medicago truncatula HOM05D002759 ORTHO05D003290 3.9e-48 195.7 179 59.2
PGR042G2027 Punica granatum HOM05D002759 ORTHO05D003290 6.6e-48 194.9 182 56.6
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 1.1e-47 194.1 179 56.4
Ca_00091_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 5.6e-47 191.8 179 55.9
Ca_29930_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 5.6e-47 191.8 179 55.9
Thecc.02G041500 Theobroma cacao HOM05D002759 ORTHO05D003290 9.5e-47 191.0 181 56.4
TPR.G2149 Trifolium pratense HOM05D002759 ORTHO05D003290 1.2e-46 190.7 179 55.9
Nn5g28049 Nelumbo nucifera HOM05D002759 ORTHO05D003290 2.8e-46 189.5 181 55.2
Sabra03G0013600 Salix brachista HOM05D002759 ORTHO05D003290 2.8e-46 189.5 182 57.7
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 3.6e-46 189.1 181 54.7
Ciclev10000008m.g Citrus clementina HOM05D002759 ORTHO05D003290 6.2e-46 188.3 183 56.8
PSO528G0214 Papaver somniferum HOM05D002759 ORTHO05D003290 1.0e-45 187.6 181 56.4
Duzib052G0069 Durio zibethinus HOM05D002759 ORTHO05D003290 1.4e-45 187.2 178 55.6
PSO170G2118 Papaver somniferum HOM05D002759 ORTHO05D003290 1.4e-45 187.2 181 55.8
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 1.2e-44 184.1 179 54.2
Psat1g219920 Pisum sativum HOM05D002759 ORTHO05D003290 1.5e-44 183.7 181 54.1
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 2.6e-44 183.0 182 55.5
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 4.4e-44 182.2 179 54.7
Gohir.A01G176651 Gossypium hirsutum HOM05D002759 ORTHO05D003290 4.4e-44 182.2 181 51.9
Lj9A311T56 Lonicera japonica HOM05D002759 ORTHO05D003290 4.4e-44 182.2 180 56.1
Gohir.D01G167432 Gossypium hirsutum HOM05D002759 ORTHO05D003290 9.8e-44 181.0 181 51.4
Gorai.002G207900 Gossypium raimondii HOM05D002759 ORTHO05D003290 9.8e-44 181.0 181 51.4
Prupe.1G563000 Prunus persica HOM05D002759 ORTHO05D003290 1.3e-43 180.6 179 54.2
Solyc01g104490.3 Solanum lycopersicum HOM05D002759 ORTHO05D003290 1.7e-43 180.3 181 51.4
DCAR_005626 Daucus carota HOM05D002759 ORTHO05D003290 2.2e-43 179.9 178 52.2
Sopen01g046990 Solanum pennellii HOM05D002759 ORTHO05D003290 2.2e-43 179.9 181 50.8
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 2.9e-43 179.5 179 55.3
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 4.9e-43 178.7 179 55.3
CAN.G1352.21 Capsicum annuum HOM05D002759 ORTHO05D003290 4.9e-43 178.7 181 51.4
Medtr7g023120 Medicago truncatula HOM05D002759 ORTHO05D003290 1.9e-42 176.8 181 51.4
Nitab4.5_0004005g0050 Nicotiana tabacum HOM05D002759 ORTHO05D003290 1.9e-42 176.8 181 50.8
Nitab4.5_0005539g0020 Nicotiana tabacum HOM05D002759 ORTHO05D003290 1.9e-42 176.8 181 51.4
Cc02_g22260 Coffea canephora HOM05D002759 ORTHO05D003290 3.2e-42 176.0 187 50.3
MELO3C011463.2 Cucumis melo HOM05D002759 ORTHO05D003290 3.2e-42 176.0 179 54.2
Migut.B00666 Erythranthe guttata HOM05D002759 ORTHO05D003290 3.2e-42 176.0 179 54.2
CsaV3_6G032190 Cucumis sativus L. HOM05D002759 ORTHO05D003290 1.2e-41 174.1 179 53.6
ECA234G1843 Erigeron canadensis HOM05D002759 ORTHO05D003290 1.2e-41 174.1 179 53.1
SGA_v2.0_scaffold110G31284 Striga asiatica HOM05D002759 ORTHO05D003290 1.2e-41 174.1 181 53.0
TWI59G0497 Tripterygium wilfordii HOM05D002759 ORTHO05D003290 2.7e-41 172.9 178 51.7
MD15G1419000 Malus domestica HOM05D002759 ORTHO05D003290 4.6e-41 172.2 178 52.2
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 4.6e-41 172.2 181 51.9
MSTRG.16534 Avicennia marina HOM05D002759 ORTHO05D003290 6.0e-41 171.8 181 49.7
SalBow5G5260 Salvia bowleyana HOM05D002759 ORTHO05D003290 1.7e-40 170.2 181 50.8
Oeu037466.1 Olea europaea HOM05D002759 ORTHO05D003290 3.0e-40 169.5 181 49.7
Aqoxy3G00692 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 1.5e-39 167.2 179 50.8
COL.COLO4_08439 Corchorus olitorius HOM05D002759 ORTHO05D003290 2.5e-39 166.4 181 50.3
AUR62035559 Chenopodium quinoa HOM05D002759 ORTHO05D003290 3.3e-39 166.0 181 50.8
Rhsim11G0131800 Rhododendron simsii HOM05D002759 ORTHO05D003290 3.3e-39 166.0 182 51.1
EL10Ac3g05252 Beta vulgaris HOM05D002759 ORTHO05D003290 1.2e-38 164.1 179 52.0
HanXRQChr10g0290421 Helianthus annuus HOM05D002759 ORTHO05D003290 1.2e-38 164.1 178 49.4
RcHm_v2.0_Chr7g0222331 Rosa chinensis HOM05D002759 ORTHO05D003290 1.2e-38 164.1 178 50.6
Actinidia00221 Actinidia chinensis HOM05D002759 ORTHO05D003290 4.7e-38 162.2 162 53.1
CDE09G0711 Ceratophyllum demersum HOM05D002759 ORTHO05D003290 8.1e-38 161.4 179 52.5
Sc19g0000800 Simmondsia chinensis HOM05D002759 ORTHO05D003290 8.1e-38 161.4 210 44.8
Ah.07g205400 Amaranthus hybridus HOM05D002759 ORTHO05D003290 1.4e-37 160.6 183 49.2
Zm00001eb193470 Zea mays HOM05D002759 ORTHO05D003290 1.4e-37 160.6 179 49.2
FvH4_3g35420 Fragaria vesca HOM05D002759 ORTHO05D003290 1.8e-37 160.2 178 48.9
FAN11G2638 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.8e-37 160.2 178 48.9
FAN16G3014 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.8e-37 160.2 178 48.9
unitig_26.g9017 Utricularia gibba HOM05D002759 ORTHO05D003290 1.8e-37 160.2 179 45.8
FvH4_5g29930 Fragaria vesca HOM05D002759 ORTHO05D003290 2.3e-37 159.8 178 48.3
Peaxi162Scf00011g00138 Petunia axillaris HOM05D002759 ORTHO05D003290 3.1e-37 159.5 166 52.4
AUR62006068 Chenopodium quinoa HOM05D002759 ORTHO05D003290 5.2e-37 158.7 178 49.4
Lsat_1_v5_gn_5_109460 Lactuca sativa HOM05D002759 ORTHO05D003290 6.8e-37 158.3 178 50.0
Os02g0770700 Oryza sativa ssp. japonica HOM05D002759 ORTHO05D003290 3.4e-36 156.0 178 47.8
Hund11642 Selenicereus undatus HOM05D002759 ORTHO05D003290 7.5e-36 154.8 174 51.1
FAN04G1156 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.2e-33 147.5 178 44.9
Cpa.g.sc148.32 Carica papaya HOM05D002759 ORTHO05D003290 3.5e-33 146.0 167 47.9
ATR0661G182 Amborella trichopoda HOM05D002759 ORTHO05D003290 6.0e-33 145.2 181 44.2
Aqoxy3G00697 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 7.8e-33 144.8 180 46.7
FAN08G3490 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.0e-32 144.4 175 46.3
Eucgr.G00634 Eucalyptus grandis HOM05D002759 ORTHO05D003290 5.1e-32 142.1 128 58.6
HPP92_009112 Vanilla planifolia HOM05D002759 ORTHO05D003290 1.1e-31 141.0 179 43.0
Hund21015 Selenicereus undatus HOM05D002759 ORTHO05D003290 3.3e-31 139.4 174 44.3
Aqoxy7G02142 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 5.6e-31 138.7 180 45.0
GSVIVG01023021001 Vitis vinifera HOM05D002759 ORTHO05D003290 1.5e-28 130.6 114 59.6
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 6.4e-27 125.2 99 61.6
CARHR254490 Cardamine hirsuta HOM05D002759 ORTHO05D003290 1.9e-26 123.6 165 41.8
Pp3c8_2900 Physcomitrium patens HOM05D002759 ORTHO05D003290 1.9e-26 123.6 179 41.9
FAN25G1732 Fragaria x ananassa HOM05D002759 ORTHO05D003290 9.2e-26 121.3 85 63.5
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.1e-25 120.2 134 50.7
SMO356G0583 Selaginella moellendorffii HOM05D002759 ORTHO05D003290 3.5e-25 119.4 180 41.1
Thhalv10029518m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 4.6e-25 119.0 165 42.4
Mapoly0118s0005 Marchantia polymorpha HOM05D002759 ORTHO05D003290 2.3e-24 116.7 193 36.8
Atru.chr6.1022 Acer truncatum HOM05D002759 ORTHO05D003290 3.0e-24 116.3 131 52.7
arahy.Tifrunner.gnm1.ann1.JK8JKR Arachis hypogaea HOM05D002759 ORTHO05D003290 8.6e-24 114.8 184 35.9
CBR_g18638 Chara braunii HOM05D002759 ORTHO05D003290 1.1e-23 114.4 177 41.2
C04p12980 Brassica napus HOM05D002759 ORTHO05D003290 2.1e-22 110.2 179 38.0
BolC4t22942H Brassica oleracea HOM05D002759 ORTHO05D003290 2.1e-22 110.2 179 38.0
BcaC02g11623 Brassica carinata HOM05D002759 ORTHO05D003290 2.8e-22 109.8 179 38.0
C04p13080 Brassica napus HOM05D002759 ORTHO05D003290 2.8e-22 109.8 179 38.0
AagrBONN_evm.TU.Sc2ySwM_117.1581 Anthoceros agrestis HOM05D002759 ORTHO05D003290 4.7e-22 109.0 178 37.1
BolC4t22359H Brassica oleracea HOM05D002759 ORTHO05D003290 1.1e-21 107.8 178 37.6
vmacro01782 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 1.1e-21 107.8 131 47.3
C04p13010 Brassica napus HOM05D002759 ORTHO05D003290 2.4e-21 106.7 169 37.9
C04p13060 Brassica napus HOM05D002759 ORTHO05D003290 2.4e-21 106.7 169 37.9
RcHm_v2.0_Chr7g0177921 Rosa chinensis HOM05D002759 ORTHO05D003290 6.9e-21 105.1 163 38.0
C04p07370 Brassica napus HOM05D002759 ORTHO05D003290 1.2e-20 104.4 179 37.4
BcaB02g09105 Brassica carinata HOM05D002759 ORTHO05D003290 1.3e-19 100.9 177 36.2
COL.COLO4_16679 Corchorus olitorius HOM05D002759 ORTHO05D003290 2.9e-19 99.8 134 41.8
Cre01.g029200 Chlamydomonas reinhardtii HOM05D002759 ORTHO05D003290 8.4e-19 98.2 172 37.2
SEGI_36881 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 8.4e-19 98.2 150 41.3
SEGI_09006 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 3.2e-18 96.3 153 40.5
COL.COLO4_38329 Corchorus olitorius HOM05D002759 ORTHO05D003290 1.1e-15 87.8 84 50.0
Ca_21888_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 2.5e-15 86.7 168 35.1
MD08G1226700 Malus domestica HOM05D002759 ORTHO05D003290 9.6e-15 84.7 116 42.2
Oeu043988.1 Olea europaea HOM05D002759 ORTHO05D003290 2.0e-12 77.0 68 51.5
RcHm_v2.0_Chr7g0223761 Rosa chinensis HOM05D002759 ORTHO05D003290 3.4e-12 76.3 53 64.2
vmacro01786 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 2.2e-11 73.6 57 61.4
Atru.chr12.1442 Acer truncatum HOM05D002759 ORTHO05D003290 1.9e-10 70.5 60 60.0
BcaC01g00805 Brassica carinata HOM05D002759 ORTHO05D032766 2.3e-08 63.5 46 69.6


User provided reference genes

Program Settings