Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR073050 Cardamine hirsuta HOM05D005454 ORTHO05D006781 1.5e-40 169.1 86 100.0
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 3.3e-24 114.8 58 96.6
Sp5g34440 Schrenkiella parvula HOM05D005454 ORTHO05D006781 3.3e-24 114.8 58 96.6
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 4.4e-24 114.4 58 96.6
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 7.5e-24 113.6 58 94.8
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 9.7e-24 113.2 57 96.5
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 9.7e-24 113.2 57 96.5
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 9.7e-24 113.2 57 96.5
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 9.7e-24 113.2 57 96.5
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 2.2e-23 112.1 57 94.7
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 2.2e-23 112.1 57 94.7
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 2.2e-23 112.1 57 94.7
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 2.2e-23 112.1 57 94.7
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 2.8e-23 111.7 57 94.7
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 6.3e-23 110.5 57 93.0
BolC8t48807H Brassica oleracea HOM05D005454 ORTHO05D006781 1.4e-22 109.4 57 91.2
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 1.8e-22 109.0 57 94.7
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 9.1e-22 106.7 58 89.7
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 5.9e-21 104.0 53 94.3
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 1.3e-20 102.8 56 91.1
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 2.5e-19 98.6 57 86.0
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 5.5e-19 97.4 57 82.5
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 7.2e-19 97.1 57 82.5
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 1.2e-18 96.3 51 88.2
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 1.6e-18 95.9 57 82.5
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 1.6e-18 95.9 57 80.7
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 1.6e-18 95.9 57 84.2
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 2.1e-18 95.5 56 83.9
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 2.1e-18 95.5 56 83.9
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 2.1e-18 95.5 57 80.7
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 2.1e-18 95.5 57 80.7
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 2.1e-18 95.5 57 80.7
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 3.6e-18 94.7 53 84.9
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 4.7e-18 94.4 52 86.5
C06p00690 Brassica napus HOM05D005454 ORTHO05D006781 4.7e-18 94.4 60 75.0
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 4.7e-18 94.4 58 77.6
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 4.7e-18 94.4 57 80.7
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 6.1e-18 94.0 52 84.6
BolC6t35206H Brassica oleracea HOM05D005454 ORTHO05D006781 8.0e-18 93.6 49 89.8
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.0e-17 93.2 49 91.8
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.0e-17 93.2 49 91.8
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 1.0e-17 93.2 49 91.8
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 1.0e-17 93.2 58 77.6
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 1.0e-17 93.2 57 78.9
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 1.0e-17 93.2 49 89.8
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 1.4e-17 92.8 57 77.2
Cfa017757 Carpinus fangiana HOM05D005454 ORTHO05D006781 1.4e-17 92.8 56 80.4
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 1.4e-17 92.8 56 82.1
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 1.4e-17 92.8 57 77.2
QL04p094659 Quercus lobata HOM05D005454 ORTHO05D006781 1.4e-17 92.8 56 82.1
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 1.4e-17 92.8 51 88.2
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 1.4e-17 92.8 51 88.2
VMungo1215G2509 Vigna mungo HOM05D005454 ORTHO05D006781 1.4e-17 92.8 57 78.9
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 1.8e-17 92.4 61 72.1
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 2.3e-17 92.0 53 81.1
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 2.3e-17 92.0 57 75.4
arahy.Tifrunner.gnm1.ann1.DLUG3E Arachis hypogaea HOM05D005454 ORTHO05D006781 3.0e-17 91.7 57 77.2
arahy.Tifrunner.gnm1.ann1.TLTS2V Arachis hypogaea HOM05D005454 ORTHO05D006781 3.0e-17 91.7 57 77.2
C03p71170 Brassica napus HOM05D005454 ORTHO05D006781 3.0e-17 91.7 60 71.7
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 3.0e-17 91.7 57 75.4
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 3.0e-17 91.7 57 78.9
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 4.0e-17 91.3 58 74.1
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 4.0e-17 91.3 57 77.2
Lj3g0001328 Lotus japonicus HOM05D005454 ORTHO05D006781 4.0e-17 91.3 57 77.2
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 5.2e-17 90.9 57 75.4
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 5.2e-17 90.9 57 77.2
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 6.8e-17 90.5 58 74.1
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 6.8e-17 90.5 57 77.2
Lalb_Chr03g0031911 Lupinus albus HOM05D005454 ORTHO05D006781 6.8e-17 90.5 53 81.1
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 6.8e-17 90.5 57 73.7
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 8.8e-17 90.1 53 81.1
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 8.8e-17 90.1 47 91.5
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 1.2e-16 89.7 57 75.4
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 1.2e-16 89.7 57 77.2
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 1.5e-16 89.4 69 62.3
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 1.5e-16 89.4 51 86.3
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 2.0e-16 89.0 49 87.8
CDE02G1314 Ceratophyllum demersum HOM05D000236 ORTHO05D000192 2.6e-16 88.6 57 73.7
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 2.6e-16 88.6 57 73.7
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 3.4e-16 88.2 56 73.2
Medtr8g447300 Medicago truncatula HOM05D005454 ORTHO05D006781 3.4e-16 88.2 52 78.8
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 3.4e-16 88.2 53 79.2
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 3.4e-16 88.2 52 78.8
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 4.4e-16 87.8 55 76.4
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 4.4e-16 87.8 55 76.4
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 4.4e-16 87.8 56 73.2
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 4.4e-16 87.8 56 73.2
MBI13_g09219_MAGBIO Magnolia biondii HOM05D005454 ORTHO05D006781 5.7e-16 87.4 49 83.7
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 7.5e-16 87.0 57 73.7
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 7.5e-16 87.0 58 70.7
Ca_26272_v3 Cicer arietinum L. HOM05D005454 ORTHO05D006781 7.5e-16 87.0 52 76.9
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 7.5e-16 87.0 75 60.0
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 7.5e-16 87.0 49 83.7
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 9.8e-16 86.7 53 77.4
BcaC08g42854 Brassica carinata HOM05D005454 ORTHO05D006781 9.8e-16 86.7 45 88.9
Potri.010G174700 Populus trichocarpa HOM05D005454 ORTHO05D006781 9.8e-16 86.7 57 73.7
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 9.8e-16 86.7 57 71.9
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 1.3e-15 86.3 54 74.1
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 1.3e-15 86.3 54 74.1
TPR.G8202 Trifolium pratense HOM05D005454 ORTHO05D006781 1.7e-15 85.9 49 81.6
Psat4g141200 Pisum sativum HOM05D005454 ORTHO05D006781 2.2e-15 85.5 48 83.3
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 2.8e-15 85.1 57 71.9
Actinidia03633 Actinidia chinensis HOM05D005454 ORTHO05D012925 3.7e-15 84.7 54 74.1
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 4.8e-15 84.3 51 80.4
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 6.3e-15 84.0 57 71.9
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 6.3e-15 84.0 57 71.9
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 1.1e-14 83.2 51 76.5
SEGI_00588 Sequoiadendron giganteum HOM05D005454 ORTHO05D006781 1.1e-14 83.2 50 78.0
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 1.1e-14 83.2 48 81.2
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.4e-14 82.8 57 70.2
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.4e-14 82.8 57 70.2
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 1.4e-14 82.8 46 84.8
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 1.4e-14 82.8 58 67.2
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 3.1e-14 81.6 49 79.6
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.2e-13 79.7 57 68.4
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 2.0e-13 79.0 53 71.7
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 2.0e-13 79.0 53 71.7
Cc00_g28770 Coffea canephora HOM05D001769 ORTHO05D001695 7.7e-13 77.0 59 64.4
Atru.chr1.31 Acer truncatum HOM05D005454 ORTHO05D006781 8.6e-12 73.6 45 77.8
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 1.1e-11 73.2 47 72.3
CDE04G2596 Ceratophyllum demersum HOM05D005454 ORTHO05D006781 2.0e-08 62.4 44 63.6
Mapoly0011s0156 Marchantia polymorpha HOM05D005454 ORTHO05D006781 1.7e-07 59.3 45 62.2
CBR_g2846 Chara braunii HOM05D005454 ORTHO05D006781 2.2e-07 58.9 59 52.5
QL04p094979 Quercus lobata HOM05D000510 ORTHO05D001548 4.1e-06 54.7 49 57.1


User provided reference genes

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