Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR073040 Cardamine hirsuta HOM05D005454 ORTHO05D006781 4.3e-36 154.1 75 100.0
A07p44460 Brassica napus HOM05D005454 ORTHO05D006781 2.6e-25 118.2 60 88.3
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 2.6e-25 118.2 60 91.7
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 3.8e-24 114.4 60 86.7
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 5.0e-24 114.0 60 86.7
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 5.0e-24 114.0 60 86.7
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 5.0e-24 114.0 59 86.4
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 1.9e-23 112.1 58 86.2
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 1.9e-23 112.1 58 86.2
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 1.9e-23 112.1 58 86.2
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 1.9e-23 112.1 58 86.2
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 1.9e-23 112.1 58 86.2
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 7.2e-23 110.2 60 81.7
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 7.2e-23 110.2 60 81.7
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 7.2e-23 110.2 60 81.7
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 7.2e-23 110.2 60 81.7
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 9.4e-23 109.8 59 83.1
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 3.0e-21 104.8 60 80.0
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 3.9e-21 104.4 59 79.7
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 3.9e-21 104.4 58 82.8
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 6.7e-21 103.6 57 80.7
Cfa017755 Carpinus fangiana HOM05D005454 ORTHO05D006781 8.8e-21 103.2 59 78.0
Haze_01788 Corylus avellana HOM05D005454 ORTHO05D006781 8.8e-21 103.2 59 78.0
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 8.8e-21 103.2 58 79.3
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 8.8e-21 103.2 58 81.0
Haze_08480 Corylus avellana HOM05D005454 ORTHO05D006781 1.1e-20 102.8 59 76.3
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 1.1e-20 102.8 58 77.6
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 1.5e-20 102.4 58 75.9
Haze_18487 Corylus avellana HOM05D005454 ORTHO05D006781 2.6e-20 101.7 58 77.6
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 5.7e-20 100.5 59 74.6
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 7.4e-20 100.1 58 77.6
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 7.4e-20 100.1 58 75.9
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 7.4e-20 100.1 59 74.6
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 9.7e-20 99.8 55 80.0
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 9.7e-20 99.8 55 80.0
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.3e-19 99.4 58 75.9
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 1.3e-19 99.4 58 75.9
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 1.3e-19 99.4 59 74.6
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 2.8e-19 98.2 58 72.4
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 2.8e-19 98.2 58 72.4
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 2.8e-19 98.2 58 72.4
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 2.8e-19 98.2 58 72.4
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 2.8e-19 98.2 56 75.0
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 3.7e-19 97.8 58 72.4
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 8.2e-19 96.7 57 70.2
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 8.2e-19 96.7 58 70.7
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 8.2e-19 96.7 57 71.9
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 8.2e-19 96.7 58 72.4
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 8.2e-19 96.7 58 74.1
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 1.1e-18 96.3 58 70.7
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 1.1e-18 96.3 60 70.0
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 1.1e-18 96.3 60 68.3
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 1.1e-18 96.3 60 68.3
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 1.1e-18 96.3 60 71.7
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 1.4e-18 95.9 62 66.1
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 1.8e-18 95.5 58 69.0
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 1.8e-18 95.5 62 71.0
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 1.8e-18 95.5 58 69.0
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 1.8e-18 95.5 58 72.4
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 2.4e-18 95.1 58 70.7
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 2.4e-18 95.1 58 70.7
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 2.4e-18 95.1 58 70.7
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 4.1e-18 94.4 58 72.4
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 4.1e-18 94.4 59 69.5
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 7.0e-18 93.6 60 70.0
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 7.0e-18 93.6 60 70.0
Hma1.2p1_0151F.1_g066990 Hydrangea macrophylla HOM05D005454 ORTHO05D006781 7.0e-18 93.6 60 65.0
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 7.0e-18 93.6 60 66.7
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 7.0e-18 93.6 56 73.2
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 9.1e-18 93.2 59 67.8
VMungo1215G2509 Vigna mungo HOM05D005454 ORTHO05D006781 9.1e-18 93.2 59 66.1
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 1.2e-17 92.8 58 67.2
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 1.6e-17 92.4 58 67.2
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 1.6e-17 92.4 58 72.4
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 1.6e-17 92.4 58 67.2
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 1.6e-17 92.4 58 69.0
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 2.0e-17 92.0 58 69.0
arahy.Tifrunner.gnm1.ann1.DLUG3E Arachis hypogaea HOM05D005454 ORTHO05D006781 2.6e-17 91.7 58 67.2
arahy.Tifrunner.gnm1.ann1.TLTS2V Arachis hypogaea HOM05D005454 ORTHO05D006781 2.6e-17 91.7 58 67.2
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 2.6e-17 91.7 58 69.0
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 2.6e-17 91.7 57 70.2
CSS0036802 Camellia sinensis var. sinensis HOM05D005454 ORTHO05D006781 3.5e-17 91.3 57 68.4
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 3.5e-17 91.3 57 70.2
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 3.5e-17 91.3 59 64.4
Gohir.A03G171875 Gossypium hirsutum HOM05D005454 ORTHO05D006781 4.5e-17 90.9 58 70.7
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 7.7e-17 90.1 58 63.8
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 7.7e-17 90.1 58 63.8
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 7.7e-17 90.1 57 70.2
HPP92_015989 Vanilla planifolia HOM05D005454 ORTHO05D006781 7.7e-17 90.1 60 66.7
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 1.0e-16 89.7 57 66.7
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 1.0e-16 89.7 56 71.4
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 1.0e-16 89.7 58 63.8
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 1.3e-16 89.4 58 65.5
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 1.3e-16 89.4 59 64.4
Psat4g141200 Pisum sativum HOM05D005454 ORTHO05D006781 1.3e-16 89.4 59 62.7
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 1.7e-16 89.0 59 64.4
Ca_26272_v3 Cicer arietinum L. HOM05D005454 ORTHO05D006781 1.7e-16 89.0 59 62.7
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 1.7e-16 89.0 59 62.7
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 2.2e-16 88.6 57 68.4
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 2.2e-16 88.6 59 62.7
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 2.2e-16 88.6 58 65.5
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 2.2e-16 88.6 58 65.5
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 2.9e-16 88.2 57 68.4
Nn7g38396 Nelumbo nucifera HOM05D005454 ORTHO05D006781 2.9e-16 88.2 55 70.9
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 3.8e-16 87.8 58 67.2
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 5.0e-16 87.4 58 62.1
Lj3g0001328 Lotus japonicus HOM05D005454 ORTHO05D006781 6.5e-16 87.0 59 62.7
TPR.G8202 Trifolium pratense HOM05D005454 ORTHO05D006781 8.5e-16 86.7 59 59.3
Medtr8g447300 Medicago truncatula HOM05D005454 ORTHO05D006781 1.5e-15 85.9 59 59.3
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 1.5e-15 85.9 58 60.3
MBI13_g09219_MAGBIO Magnolia biondii HOM05D005454 ORTHO05D006781 1.9e-15 85.5 65 66.2
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 1.9e-15 85.5 58 60.3
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 1.9e-15 85.5 58 60.3
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 1.9e-15 85.5 58 60.3
Lalb_Chr03g0031911 Lupinus albus HOM05D005454 ORTHO05D006781 2.5e-15 85.1 59 59.3
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 4.7e-14 80.9 60 60.0
RcHm_v2.0_Chr5g0023191 Rosa chinensis HOM05D005454 ORTHO05D006781 3.0e-13 78.2 59 59.3
SEGI_00588 Sequoiadendron giganteum HOM05D005454 ORTHO05D006781 4.0e-13 77.8 58 55.2
Pp3c27_5100 Physcomitrium patens HOM05D005454 ORTHO05D006781 2.7e-06 55.1 58 39.7
DCAR_013713 Daucus carota HOM05D005454 ORTHO05D006781 3.6e-06 54.7 51 47.1
SGA_v2.0_scaffold29G12256 Striga asiatica HOM05D005454 ORTHO05D006781 8.0e-06 53.5 36 66.7


User provided reference genes

Program Settings