Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 5.0e-111 404.4 203 100.0
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 1.3e-95 353.2 193 92.2
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 1.2e-93 346.7 193 90.2
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 6.1e-93 344.4 193 90.7
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 1.4e-92 343.2 195 90.3
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 1.4e-92 343.2 193 90.2
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 3.0e-92 342.0 194 89.2
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 8.3e-90 334.0 191 88.0
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 1.1e-89 333.6 197 87.8
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 1.8e-89 332.8 197 87.3
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 7.0e-89 330.9 195 86.7
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 4.6e-88 328.2 194 85.6
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 4.6e-88 328.2 194 85.6
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 5.9e-88 327.8 194 85.1
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 1.0e-87 327.0 194 85.1
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 1.0e-87 327.0 194 85.1
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 1.7e-87 326.2 197 85.8
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 1.7e-87 326.2 197 85.8
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 2.3e-87 325.9 197 85.3
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 2.8e-85 318.9 194 84.5
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 6.1e-85 317.8 193 83.9
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 1.8e-84 316.2 199 84.9
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 3.1e-84 315.5 199 84.9
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 3.1e-84 315.5 199 78.4
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 7.5e-83 310.8 194 80.9
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 9.8e-83 310.5 195 83.1
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 3.7e-82 308.5 195 82.1
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 3.7e-82 308.5 193 78.8
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 3.7e-82 308.5 193 78.8
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.1e-81 307.0 193 78.2
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 1.6e-80 303.1 193 77.2
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 3.5e-80 302.0 193 76.2
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 4.6e-80 301.6 195 79.0
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 7.8e-80 300.8 196 78.1
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 1.0e-79 300.4 197 78.7
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 5.0e-79 298.1 193 75.1
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 2.5e-78 295.8 193 75.6
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 7.3e-78 294.3 196 75.0
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 9.5e-78 293.9 193 74.6
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 1.2e-77 293.5 196 74.5
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 4.7e-77 291.6 191 75.4
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 4.7e-77 291.6 192 76.0
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 6.2e-77 291.2 192 74.0
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 6.2e-77 291.2 195 75.9
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 1.8e-76 289.7 193 74.6
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 3.1e-76 288.9 193 73.6
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 4.0e-76 288.5 191 74.9
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 4.0e-76 288.5 196 75.0
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 5.2e-76 288.1 192 72.4
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 6.8e-76 287.7 192 73.4
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 1.2e-75 287.0 192 72.9
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 1.2e-75 287.0 191 72.3
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 1.5e-75 286.6 192 71.9
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 1.5e-75 286.6 194 73.2
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 1.5e-75 286.6 192 73.4
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 2.0e-75 286.2 192 73.4
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 2.0e-75 286.2 195 73.3
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 2.0e-75 286.2 192 72.9
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 2.6e-75 285.8 191 73.3
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 2.6e-75 285.8 191 73.3
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 3.4e-75 285.4 192 74.5
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 3.4e-75 285.4 191 74.3
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 4.4e-75 285.0 192 74.0
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 9.8e-75 283.9 202 74.3
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 1.7e-74 283.1 192 73.4
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 2.9e-74 282.3 201 70.6
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 6.4e-74 281.2 191 71.7
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 6.4e-74 281.2 192 72.4
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 6.4e-74 281.2 193 72.5
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 8.3e-74 280.8 192 71.4
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 8.3e-74 280.8 191 72.8
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 1.1e-73 280.4 192 72.4
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 1.4e-73 280.0 192 71.9
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 1.9e-73 279.6 192 72.4
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 1.9e-73 279.6 194 70.1
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.4e-73 279.3 193 73.6
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.4e-73 279.3 197 70.6
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 2.4e-73 279.3 193 72.0
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 3.2e-73 278.9 192 72.4
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 4.1e-73 278.5 192 72.9
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 5.4e-73 278.1 197 70.6
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 5.4e-73 278.1 193 72.0
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 7.1e-73 277.7 199 67.8
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 7.1e-73 277.7 194 72.7
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 9.2e-73 277.3 195 71.3
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 1.2e-72 276.9 193 69.9
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.2e-72 276.9 191 71.7
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 1.6e-72 276.6 193 71.5
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 2.1e-72 276.2 192 70.8
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 2.1e-72 276.2 192 70.8
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 2.1e-72 276.2 193 72.0
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 2.7e-72 275.8 192 71.4
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 4.6e-72 275.0 197 70.6
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 4.6e-72 275.0 197 70.6
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 7.8e-72 274.2 192 70.3
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 7.8e-72 274.2 197 70.6
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 7.8e-72 274.2 194 71.6
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 3.0e-71 272.3 200 67.5
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 5.1e-71 271.6 194 71.1
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 5.1e-71 271.6 192 71.9
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 2.5e-70 269.2 194 69.6
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 2.5e-70 269.2 192 71.4
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 3.3e-70 268.9 192 69.3
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 5.6e-70 268.1 202 65.8
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 5.6e-70 268.1 192 68.8
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 9.5e-70 267.3 192 69.8
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 1.2e-69 266.9 196 67.9
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 3.6e-69 265.4 192 68.2
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 3.6e-69 265.4 191 70.2
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 3.6e-69 265.4 193 67.9
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 8.1e-69 264.2 193 67.9
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 1.1e-68 263.8 191 69.6
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 2.3e-68 262.7 202 68.3
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 3.1e-68 262.3 209 64.6
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 3.4e-67 258.8 197 68.5
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 4.4e-67 258.5 192 65.6
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 9.9e-67 257.3 191 68.1
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 6.4e-66 254.6 212 62.3
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 2.4e-65 252.7 215 63.3
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 3.2e-65 252.3 194 62.9
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 4.1e-65 251.9 189 67.2
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 5.4e-65 251.5 192 66.7
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 5.4e-65 251.5 203 62.6
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 3.5e-64 248.8 192 67.7
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 4.6e-64 248.4 193 66.3
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 7.8e-64 247.7 195 61.0
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 1.9e-62 243.0 216 59.7
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 2.5e-62 242.7 195 66.2
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 4.3e-62 241.9 205 61.0
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 4.0e-60 235.3 164 69.5
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 2.9e-58 229.2 265 48.3
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 4.9e-58 228.4 169 68.6
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 5.4e-57 224.9 150 72.0
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 6.0e-56 221.5 219 55.3
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 1.4e-52 210.3 181 59.1
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 2.1e-48 196.4 193 51.3
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 2.7e-48 196.1 193 52.8
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 1.9e-46 189.9 168 58.9
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 2.5e-46 189.5 193 50.3
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 3.3e-46 189.1 129 73.6
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 9.6e-46 187.6 202 52.0
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.6e-45 186.8 134 67.9
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 6.2e-45 184.9 171 56.1
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.7e-42 176.8 135 65.2
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 3.1e-36 156.0 201 42.3
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 1.5e-35 153.7 198 43.4
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 1.4e-33 147.1 85 84.7
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 3.2e-33 146.0 231 43.3
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 7.1e-33 144.8 154 54.5
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 1.0e-26 124.4 87 66.7
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 1.6e-24 117.1 79 68.4
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 1.8e-23 113.6 73 79.5
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 2.3e-23 113.2 64 87.5
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 7.7e-19 98.2 212 33.0
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 2.9e-18 96.3 64 70.3
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 9.4e-17 91.3 65 64.6
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 8.8e-15 84.7 206 30.1
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 8.8e-15 84.7 110 50.0
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 1.1e-14 84.3 60 61.7
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.5e-14 84.0 52 78.8
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 1.5e-14 84.0 199 31.2
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 5.9e-11 72.0 60 63.3
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 2.5e-09 66.6 75 50.7
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 6.7e-07 58.5 62 48.4


User provided reference genes

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