Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 1.1e-84 316.6 165 100.0
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 4.1e-79 298.1 165 93.3
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 9.1e-79 297.0 165 93.3
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 7.2e-76 287.3 166 91.0
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 7.2e-76 287.3 165 90.3
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 2.3e-74 282.3 165 89.1
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 1.2e-73 280.0 165 88.5
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 9.8e-73 276.9 165 84.2
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 7.0e-71 270.8 166 87.3
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 1.2e-70 270.0 165 87.3
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 1.6e-70 269.6 166 87.3
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 2.0e-70 269.2 166 86.7
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 2.0e-70 269.2 166 86.7
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 7.7e-70 267.3 166 86.1
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 5.7e-65 251.1 163 79.1
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 2.2e-64 249.2 163 81.6
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 2.0e-62 242.7 157 81.5
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 1.3e-61 240.0 159 78.0
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 2.3e-61 239.2 157 81.5
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 8.6e-61 237.3 154 82.5
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 8.6e-61 237.3 157 80.3
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 1.5e-60 236.5 160 80.0
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 1.5e-60 236.5 160 80.0
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 5.6e-60 234.6 160 79.4
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 1.2e-57 226.9 160 71.9
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 3.4e-57 225.3 160 72.5
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 5.8e-57 224.6 154 76.6
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 7.5e-57 224.2 158 73.4
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 7.5e-57 224.2 158 73.4
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 9.8e-57 223.8 154 76.6
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 9.8e-57 223.8 158 72.2
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 2.9e-56 222.2 160 73.1
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 3.7e-56 221.9 160 71.2
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 1.9e-55 219.5 165 70.9
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 9.2e-55 217.2 165 69.1
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 1.6e-54 216.5 155 72.9
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 1.6e-54 216.5 150 74.7
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 2.0e-54 216.1 153 71.9
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 2.7e-54 215.7 144 75.7
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 3.5e-54 215.3 153 72.5
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 4.6e-54 214.9 153 72.5
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 4.6e-54 214.9 155 72.9
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 1.0e-53 213.8 165 69.7
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 1.3e-53 213.4 154 70.8
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 1.7e-53 213.0 152 72.4
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 1.7e-53 213.0 166 68.1
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 6.6e-53 211.1 153 69.9
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 1.5e-52 209.9 165 66.1
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 1.5e-52 209.9 146 74.7
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 1.5e-52 209.9 153 71.9
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 1.9e-52 209.5 158 70.9
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 2.5e-52 209.1 166 66.9
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 2.5e-52 209.1 166 66.9
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 5.6e-52 208.0 147 72.1
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 5.6e-52 208.0 166 67.5
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 7.3e-52 207.6 153 69.9
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 7.3e-52 207.6 164 67.1
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 9.5e-52 207.2 146 73.3
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 1.6e-51 206.5 130 86.2
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 1.6e-51 206.5 147 72.1
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 1.6e-51 206.5 144 73.6
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 6.2e-51 204.5 130 85.4
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 6.2e-51 204.5 164 65.9
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 1.8e-50 203.0 164 65.9
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 1.8e-50 203.0 145 71.0
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 1.8e-50 203.0 161 65.2
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 2.3e-50 202.6 157 68.8
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 2.3e-50 202.6 157 68.8
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 3.1e-50 202.2 145 71.0
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 6.8e-50 201.1 145 71.0
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 6.8e-50 201.1 142 72.5
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 1.5e-49 199.9 141 71.6
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 3.4e-49 198.7 155 69.0
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 4.4e-49 198.4 144 69.4
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 5.8e-49 198.0 143 71.3
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 5.8e-49 198.0 142 70.4
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 2.2e-48 196.1 144 68.8
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 2.9e-48 195.7 146 68.5
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 2.9e-48 195.7 152 69.1
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 2.9e-48 195.7 149 68.5
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 4.9e-48 194.9 145 67.6
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 8.3e-48 194.1 148 68.9
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 8.3e-48 194.1 150 68.7
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.1e-47 193.7 195 57.4
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.1e-47 193.7 148 68.9
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 1.1e-47 193.7 146 67.8
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 1.1e-47 193.7 147 66.7
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.4e-47 193.4 138 69.6
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 1.4e-47 193.4 155 63.2
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 1.4e-47 193.4 148 68.9
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 3.2e-47 192.2 139 69.1
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 4.1e-47 191.8 148 68.2
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 5.4e-47 191.4 154 62.3
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 7.1e-47 191.0 192 57.8
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 2.1e-46 189.5 125 76.8
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 2.1e-46 189.5 141 70.2
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 2.7e-46 189.1 143 67.8
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 7.8e-46 187.6 136 70.6
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 1.0e-45 187.2 124 76.6
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 3.0e-45 185.7 138 67.4
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 3.3e-44 182.2 134 70.1
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 9.5e-44 180.6 134 69.4
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 1.2e-43 180.3 138 66.7
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 6.2e-43 177.9 103 91.3
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 8.1e-43 177.6 128 71.1
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 1.5e-41 173.3 138 63.8
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 1.7e-40 169.9 127 69.3
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 3.2e-39 165.6 109 77.1
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 1.6e-38 163.3 144 59.7
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 1.0e-37 160.6 124 68.5
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 2.3e-37 159.5 99 82.8
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 3.9e-37 158.7 103 76.7
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 8.6e-37 157.5 101 78.2
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 4.3e-36 155.2 104 79.8
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 2.1e-35 152.9 104 77.9
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 1.7e-32 143.3 130 56.2
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 2.2e-32 142.9 102 71.6
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 2.4e-31 139.4 118 61.0
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 2.1e-30 136.3 125 56.0
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 3.0e-29 132.5 127 51.2
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 1.5e-28 130.2 79 82.3
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 3.1e-26 122.5 94 66.0
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 6.9e-26 121.3 84 73.8
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 1.2e-25 120.6 102 61.8
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 3.8e-24 115.5 113 58.4
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 1.4e-23 113.6 74 77.0
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 2.5e-20 102.8 127 52.0
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 2.0e-17 93.2 118 43.2
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 1.4e-15 87.0 55 76.4
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 2.4e-15 86.3 118 42.4
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 1.2e-14 84.0 66 65.2
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 6.0e-14 81.6 132 38.6
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 6.2e-11 71.6 54 63.0
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 9.0e-10 67.8 48 72.9
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 9.0e-10 67.8 48 72.9
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 7.6e-09 64.7 52 63.5
C08p44260 Brassica napus HOM05D005569 ORTHO05D007052 4.6e-06 55.5 38 81.6
BolC8t51972H Brassica oleracea HOM05D005569 ORTHO05D000015 4.6e-06 55.5 35 82.9


User provided reference genes

Program Settings