Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 2.0e-269 931.8 458 100.0
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 1.3e-199 699.9 476 75.0
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 1.1e-198 696.8 475 75.4
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 8.7e-196 687.2 475 73.7
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 2.1e-194 682.6 469 74.8
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 8.4e-191 670.6 473 74.2
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 5.3e-169 598.2 457 68.1
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 8.5e-167 590.9 457 67.6
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 1.4e-166 590.1 469 64.4
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 2.1e-165 586.3 461 67.9
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 3.6e-165 585.5 460 68.0
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 7.9e-165 584.3 457 66.1
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 1.7e-143 513.5 457 61.3
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 3.2e-81 306.6 310 56.1
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 1.9e-62 244.2 512 35.2
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 1.1e-60 238.4 521 33.0
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 3.3e-54 216.9 521 31.3
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 1.5e-51 208.0 523 32.3
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 1.0e-50 205.3 559 29.3
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 2.9e-50 203.8 563 30.4
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 1.1e-49 201.8 501 31.3
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 4.8e-45 186.4 604 26.7
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 4.8e-45 186.4 604 26.7
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 3.5e-43 180.3 518 29.7
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 7.7e-43 179.1 536 28.9
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 1.7e-42 177.9 488 30.7
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 2.2e-42 177.6 571 27.0
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 1.9e-41 174.5 536 28.7
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 4.7e-40 169.9 402 31.1
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 8.0e-40 169.1 535 29.0
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 1.0e-39 168.7 557 27.5
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 1.0e-39 168.7 565 28.3
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 8.8e-39 165.6 533 28.0
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 8.8e-39 165.6 357 33.3
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 7.5e-38 162.5 424 29.2
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 1.7e-37 161.4 436 31.0
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 8.2e-37 159.1 459 29.4
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 4.1e-36 156.8 404 30.9
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 7.0e-36 156.0 306 33.3
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 5.0e-34 149.8 554 27.8
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 1.9e-33 147.9 622 25.7
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 9.4e-33 145.6 366 30.3
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 9.4e-33 145.6 246 38.2
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 2.1e-32 144.4 250 39.2
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 2.3e-31 141.0 337 32.6
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 1.2e-30 138.7 301 31.9
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 1.5e-30 138.3 361 31.3
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 1.5e-30 138.3 250 38.0
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 2.6e-30 137.5 313 33.9
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 3.4e-30 137.1 257 35.8
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 4.4e-30 136.7 621 24.5
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 4.4e-30 136.7 252 34.9
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 7.5e-30 136.0 419 29.8
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 2.2e-29 134.4 261 37.2
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 2.8e-29 134.0 281 33.8
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 4.8e-29 133.3 454 25.8
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 6.3e-29 132.9 343 32.1
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 6.3e-29 132.9 299 33.4
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 8.3e-29 132.5 343 32.7
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 1.4e-28 131.7 320 32.2
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 2.4e-28 131.0 369 31.7
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 1.2e-27 128.6 360 30.6
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 1.6e-27 128.3 369 32.0
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 1.6e-27 128.3 249 34.5
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 2.0e-27 127.9 252 34.9
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 4.5e-27 126.7 172 45.3
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 5.9e-27 126.3 292 32.9
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 1.3e-26 125.2 351 31.9
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 2.3e-26 124.4 247 36.0
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 8.6e-26 122.5 404 28.0
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 1.1e-25 122.1 247 35.6
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 2.5e-25 120.9 297 30.6
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 5.5e-25 119.8 234 36.3
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 7.2e-25 119.4 255 34.5
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 1.2e-24 118.6 287 30.7
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 2.8e-24 117.5 395 28.6
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 6.1e-24 116.3 380 28.9
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 8.0e-24 115.9 249 30.1
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 1.8e-23 114.8 235 35.3
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 3.0e-23 114.0 374 27.0
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 1.5e-22 111.7 370 29.7
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 7.5e-22 109.4 230 36.1
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 1.3e-21 108.6 266 32.7
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 8.3e-21 105.9 175 38.9
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 1.1e-20 105.5 179 38.5
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 1.4e-20 105.1 183 37.7
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 4.1e-20 103.6 172 36.0
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 7.0e-20 102.8 279 31.5
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 9.2e-20 102.4 250 31.2
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 1.2e-19 102.1 242 31.8
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 4.5e-19 100.1 276 28.3
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 5.9e-19 99.8 338 27.5
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 1.0e-18 99.0 189 36.5
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 1.3e-18 98.6 250 30.4
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 1.3e-18 98.6 411 26.5
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 2.3e-18 97.8 219 32.0
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 6.6e-18 96.3 316 29.4
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 6.6e-18 96.3 234 30.3
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 8.6e-18 95.9 210 31.4
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 1.5e-17 95.1 170 34.1
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 2.5e-17 94.4 283 27.9
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 4.3e-17 93.6 266 28.9
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 7.3e-17 92.8 175 33.1
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 9.5e-17 92.4 220 30.0
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 8.0e-16 89.4 172 33.7
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 1.4e-15 88.6 182 33.0
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 1.8e-15 88.2 182 33.0
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 3.0e-15 87.4 359 24.0
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 4.0e-15 87.0 188 33.5
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 4.4e-14 83.6 77 50.6
Thecc.07G116600 Theobroma cacao HOM05D006067 ORTHO05D007327 1.4e-12 78.6 142 34.5
AUR62019577 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.9e-12 78.2 338 25.4
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 1.9e-12 78.2 187 33.2
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 6.0e-11 73.2 288 27.1
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 7.8e-11 72.8 109 44.0
FAN16G1756 Fragaria x ananassa HOM05D006067 ORTHO05D007327 1.3e-10 72.0 197 31.5
Mapoly0061s0049 Marchantia polymorpha HOM05D006067 ORTHO05D007327 1.1e-09 68.9 82 40.2
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 1.6e-08 65.1 96 33.3
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 1.6e-08 65.1 114 34.2
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 3.6e-08 63.9 283 23.0
PGSC0003DMG400021262 Solanum tuberosum HOM05D006067 ORTHO05D007327 4.7e-08 63.5 74 44.6
Lj1P829T26 Lonicera japonica HOM05D006067 ORTHO05D007327 1.4e-07 62.0 135 33.3
Lj5g0003431 Lotus japonicus HOM05D002310 ORTHO05D002326 7.5e-06 56.2 136 27.9
Nitab4.5_0000383g0160 Nicotiana tabacum HOM05D006067 ORTHO05D007327 9.8e-06 55.8 41 51.2
SHI37128 Sapria himalayana HOM05D006067 ORTHO05D007327 9.8e-06 55.8 246 24.8


User provided reference genes

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