Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR072350 Cardamine hirsuta HOM05D004141 ORTHO05D005416 2.4e-116 422.2 209 100.0
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 2.7e-112 408.7 209 96.2
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 6.7e-111 404.1 209 94.7
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 3.3e-110 401.7 209 94.7
Carub.0002s2562 Capsella rubella HOM05D004141 ORTHO05D005416 4.4e-110 401.4 209 93.3
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 4.8e-109 397.9 209 94.3
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 1.1e-108 396.7 209 92.8
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 1.1e-108 396.7 209 92.8
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 1.1e-108 396.7 209 92.8
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 1.4e-108 396.4 210 93.8
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 1.8e-108 396.0 209 93.8
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 4.1e-108 394.8 220 89.5
C03p92790 Brassica napus HOM05D004141 ORTHO05D005416 3.5e-107 391.7 206 93.7
THA.LOC104812317 Tarenaya hassleriana HOM05D004141 ORTHO05D005416 1.4e-103 379.8 209 87.6
Thhalv10007837m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 3.9e-103 378.3 203 90.6
GSVIVG01014186001 Vitis vinifera HOM05D004141 ORTHO05D005416 4.8e-101 371.3 209 84.7
TWI31G0451 Tripterygium wilfordii HOM05D004141 ORTHO05D005416 6.3e-101 370.9 203 86.2
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 7.0e-100 367.5 209 82.3
CANSAT78G1263 Cannabis sativa HOM05D004141 ORTHO05D005416 2.6e-99 365.5 209 83.7
CANSAT78G2476 Cannabis sativa HOM05D004141 ORTHO05D005416 2.6e-99 365.5 209 83.7
Potri.011G109000 Populus trichocarpa HOM05D004141 ORTHO05D005416 1.7e-98 362.8 204 84.3
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 2.2e-98 362.5 209 83.7
Dinv15000 Davidia involucrata HOM05D004141 ORTHO05D005416 2.2e-98 362.5 209 82.8
QL06p023676 Quercus lobata HOM05D004141 ORTHO05D005416 2.9e-98 362.1 208 82.7
CSS0023821 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 3.8e-98 361.7 209 81.8
ClCG07G010270 Citrullus lanatus HOM05D004141 ORTHO05D005416 3.8e-98 361.7 209 84.7
Thecc.07G117900 Theobroma cacao HOM05D004141 ORTHO05D005416 5.0e-98 361.3 209 82.3
Atru.chr2.2126 Acer truncatum HOM05D004141 ORTHO05D005416 6.5e-98 360.9 209 82.3
Duzib213G0227 Durio zibethinus HOM05D004141 ORTHO05D005416 6.5e-98 360.9 211 83.9
Sabra11G0096600 Salix brachista HOM05D004141 ORTHO05D005416 6.5e-98 360.9 204 83.8
Lj6g0002556 Lotus japonicus HOM05D004141 ORTHO05D005416 1.1e-97 360.1 209 82.3
VMungo1080G0359 Vigna mungo HOM05D004141 ORTHO05D005416 1.1e-97 360.1 209 82.8
Ca_10927_v3 Cicer arietinum L. HOM05D004141 ORTHO05D005416 1.9e-97 359.4 209 82.8
Migut.H02002 Erythranthe guttata HOM05D004141 ORTHO05D005416 1.9e-97 359.4 209 83.7
Lj3g0016162 Lotus japonicus HOM05D004141 ORTHO05D005416 3.2e-97 358.6 209 81.8
Psat6g208960 Pisum sativum HOM05D004141 ORTHO05D005416 3.2e-97 358.6 201 86.1
CAN.G874.81 Capsicum annuum HOM05D004141 ORTHO05D005416 4.2e-97 358.2 209 81.8
CiPaw.11G159700 Carya illinoinensis HOM05D004141 ORTHO05D005416 5.5e-97 357.8 210 81.4
CsaV3_4G008070 Cucumis sativus L. HOM05D004141 ORTHO05D005416 5.5e-97 357.8 203 85.7
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 5.5e-97 357.8 207 83.1
TPR.G5502 Trifolium pratense HOM05D004141 ORTHO05D005416 7.2e-97 357.5 209 82.8
Ciclev10020399m.g Citrus clementina HOM05D004141 ORTHO05D005416 9.4e-97 357.1 209 80.4
Phvul.005G081600 Phaseolus vulgaris HOM05D004141 ORTHO05D005416 9.4e-97 357.1 209 81.8
Lsat_1_v5_gn_7_102521 Lactuca sativa HOM05D004141 ORTHO05D005416 1.6e-96 356.3 209 81.3
Cfa017272 Carpinus fangiana HOM05D004141 ORTHO05D005416 2.1e-96 355.9 210 81.0
MELO3C016129.2 Cucumis melo HOM05D004141 ORTHO05D005416 2.1e-96 355.9 201 86.1
Rhsim04G0026700 Rhododendron simsii HOM05D004141 ORTHO05D005416 2.1e-96 355.9 203 82.8
Gohir.D01G042710 Gossypium hirsutum HOM05D004141 ORTHO05D005416 2.7e-96 355.5 204 84.3
Gorai.002G054000 Gossypium raimondii HOM05D004141 ORTHO05D005416 2.7e-96 355.5 204 84.3
Ah.16g104680 Amaranthus hybridus HOM05D004141 ORTHO05D005416 3.6e-96 355.1 209 81.3
Lalb_Chr25g0285811 Lupinus albus HOM05D004141 ORTHO05D005416 3.6e-96 355.1 203 83.3
arahy.Tifrunner.gnm1.ann1.K2RFPE Arachis hypogaea HOM05D004141 ORTHO05D005416 4.7e-96 354.8 206 81.1
Cc05_g11010 Coffea canephora HOM05D004141 ORTHO05D005416 4.7e-96 354.8 209 81.8
Nitab4.5_0000383g0110 Nicotiana tabacum HOM05D004141 ORTHO05D005416 4.7e-96 354.8 208 81.7
Solyc06g082490.4 Solanum lycopersicum HOM05D004141 ORTHO05D005416 4.7e-96 354.8 209 81.8
Sopen06g033870 Solanum pennellii HOM05D004141 ORTHO05D005416 4.7e-96 354.8 209 81.8
Sc03g0010560 Simmondsia chinensis HOM05D004141 ORTHO05D005416 6.1e-96 354.4 209 82.3
TAR627G0990 Trochodendron aralioides HOM05D004141 ORTHO05D005416 6.1e-96 354.4 203 81.3
arahy.Tifrunner.gnm1.ann1.2ZZ8MX Arachis hypogaea HOM05D004141 ORTHO05D005416 8.0e-96 354.0 206 81.1
HanXRQChr15g0495231 Helianthus annuus HOM05D004141 ORTHO05D005416 1.0e-95 353.6 209 79.9
Glyma.12G230400 Glycine max HOM05D004141 ORTHO05D005416 1.4e-95 353.2 209 82.3
AUR62019583 Chenopodium quinoa HOM05D004141 ORTHO05D005416 1.8e-95 352.8 209 79.9
vmacro09491 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 1.8e-95 352.8 209 79.4
PGSC0003DMG400030465 Solanum tuberosum HOM05D004141 ORTHO05D005416 3.0e-95 352.1 209 81.8
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 4.0e-95 351.7 206 80.6
MD11G1264500 Malus domestica HOM05D004141 ORTHO05D005416 4.0e-95 351.7 208 82.2
Prupe.5G052700 Prunus persica HOM05D004141 ORTHO05D005416 4.0e-95 351.7 210 81.4
Hund09287 Selenicereus undatus HOM05D004141 ORTHO05D005416 5.2e-95 351.3 205 80.0
FvH4_3g18220 Fragaria vesca HOM05D004141 ORTHO05D005416 6.7e-95 350.9 204 81.9
FAN16G3678 Fragaria x ananassa HOM05D004141 ORTHO05D005416 6.7e-95 350.9 204 81.9
Glyma.13G269200 Glycine max HOM05D004141 ORTHO05D005416 6.7e-95 350.9 209 80.9
arahy.Tifrunner.gnm1.ann1.DJ268J Arachis hypogaea HOM05D004141 ORTHO05D005416 8.8e-95 350.5 206 80.1
CsaV3_7G010060 Cucumis sativus L. HOM05D004141 ORTHO05D005416 1.2e-94 350.1 201 84.6
FAN11G2786 Fragaria x ananassa HOM05D004141 ORTHO05D005416 1.5e-94 349.7 204 81.4
Oeu061361.2 Olea europaea HOM05D004141 ORTHO05D005416 2.0e-94 349.4 209 80.9
FAN25G0103 Fragaria x ananassa HOM05D004141 ORTHO05D005416 3.3e-94 348.6 203 81.3
Lj1C587G1 Lonicera japonica HOM05D004141 ORTHO05D005416 4.4e-94 348.2 203 82.3
Actinidia18802 Actinidia chinensis HOM05D004141 ORTHO05D005416 5.7e-94 347.8 210 79.0
SGA_v2.0_scaffold130G34289 Striga asiatica HOM05D004141 ORTHO05D005416 5.7e-94 347.8 207 79.7
ECA232G4285 Erigeron canadensis HOM05D004141 ORTHO05D005416 7.5e-94 347.4 211 80.1
SalBow7G1122 Salvia bowleyana HOM05D004141 ORTHO05D005416 9.7e-94 347.1 209 79.9
RcHm_v2.0_Chr5g0030771 Rosa chinensis HOM05D004141 ORTHO05D005416 1.3e-93 346.7 204 80.4
Atru.chr3.1550 Acer truncatum HOM05D004141 ORTHO05D005416 1.7e-93 346.3 251 70.1
Aqoxy1G02012 Aquilegia oxysepala HOM05D004141 ORTHO05D005416 1.7e-93 346.3 203 81.3
Peaxi162Scf00111g01467 Petunia axillaris HOM05D004141 ORTHO05D005416 1.7e-93 346.3 201 83.1
FAN21G2932 Fragaria x ananassa HOM05D004141 ORTHO05D005416 2.2e-93 345.9 204 80.9
DCAR_030174 Daucus carota HOM05D004141 ORTHO05D005416 2.8e-93 345.5 209 78.0
HanXRQChr04g0118321 Helianthus annuus HOM05D004141 ORTHO05D005416 2.8e-93 345.5 210 78.6
Eucgr.F01245 Eucalyptus grandis HOM05D004141 ORTHO05D005416 3.7e-93 345.1 202 80.2
Hma1.2p1_1016F.1_g248060 Hydrangea macrophylla HOM05D004141 ORTHO05D005416 3.7e-93 345.1 209 78.9
PSO017G5924 Papaver somniferum HOM05D004141 ORTHO05D005416 3.7e-93 345.1 201 82.1
Nn7g36869 Nelumbo nucifera HOM05D004141 ORTHO05D005416 6.3e-93 344.4 203 79.3
Peaxi162Scf00390g00331 Petunia axillaris HOM05D004141 ORTHO05D005416 8.3e-93 344.0 201 82.1
TAR629G0569 Trochodendron aralioides HOM05D004141 ORTHO05D005416 8.3e-93 344.0 203 81.3
Actinidia35211 Actinidia chinensis HOM05D004141 ORTHO05D005416 1.8e-92 342.8 207 78.7
MSTRG.11343 Avicennia marina HOM05D004141 ORTHO05D005416 2.4e-92 342.4 204 80.9
Prupe.4G241400 Prunus persica HOM05D004141 ORTHO05D005416 2.4e-92 342.4 210 80.0
MBI14_g32936_MAGBIO Magnolia biondii HOM05D004141 ORTHO05D005416 2.7e-91 339.0 209 76.6
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 3.5e-91 338.6 201 79.6
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 1.0e-90 337.0 202 77.7
Zm00001eb072460 Zea mays HOM05D004141 ORTHO05D005416 1.3e-90 336.7 202 78.2
PGR004G1319 Punica granatum HOM05D004141 ORTHO05D005416 1.7e-90 336.3 209 78.9
PGR117G0003 Punica granatum HOM05D004141 ORTHO05D005416 1.7e-90 336.3 209 78.9
ATR0807G029 Amborella trichopoda HOM05D004141 ORTHO05D005416 3.2e-89 332.0 218 74.3
Rhsim02G0051200 Rhododendron simsii HOM05D004141 ORTHO05D005416 3.2e-89 332.0 246 65.9
HPP92_017867 Vanilla planifolia HOM05D004141 ORTHO05D005416 7.2e-89 330.9 209 76.6
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 1.2e-88 330.1 202 77.2
AUR62037553 Chenopodium quinoa HOM05D004141 ORTHO05D005416 1.2e-86 323.6 189 82.0
CSS0043357 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 3.7e-85 318.5 207 75.8
Thhalv10019736m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 3.7e-85 318.5 163 96.3
SEGI_24046 Sequoiadendron giganteum HOM05D004141 ORTHO05D005416 8.3e-85 317.4 205 72.2
Sed0017698 Sechium edule HOM05D004141 ORTHO05D005416 4.1e-84 315.1 211 75.8
EL10Ac4g08353 Beta vulgaris HOM05D004141 ORTHO05D005416 3.8e-82 308.5 295 56.3
unitig_72.g29740 Utricularia gibba HOM05D004141 ORTHO05D005416 6.6e-82 307.8 224 67.9
AagrBONN_evm.TU.Sc2ySwM_117.897 Anthoceros agrestis HOM05D004141 ORTHO05D005416 4.2e-81 305.1 198 71.7
CSS0028209 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 2.8e-80 302.4 191 77.5
Pp3c12_4340 Physcomitrium patens HOM05D004141 ORTHO05D005416 8.0e-80 300.8 203 68.0
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 1.4e-79 300.1 195 70.8
unitig_746.g26536 Utricularia gibba HOM05D004141 ORTHO05D005416 1.1e-76 290.4 185 74.6
Mapoly0001s0113 Marchantia polymorpha HOM05D004141 ORTHO05D005416 1.6e-75 286.6 195 67.2
ECA240G0250 Erigeron canadensis HOM05D004141 ORTHO05D005416 1.7e-74 283.1 168 79.8
Duzib213G0637 Durio zibethinus HOM05D004141 ORTHO05D005416 1.4e-68 263.5 211 66.8
Manes.03G100400 Manihot esculenta HOM05D004141 ORTHO05D005416 2.0e-67 259.6 150 84.0
Dinv18368 Davidia involucrata HOM05D004141 ORTHO05D005416 3.5e-67 258.8 212 62.3
Sed0020321 Sechium edule HOM05D004141 ORTHO05D005416 3.5e-67 258.8 150 84.0
Potri.001G393000 Populus trichocarpa HOM05D004141 ORTHO05D005416 6.8e-63 244.6 203 63.5
Oeu031026.1 Olea europaea HOM05D004141 ORTHO05D005416 3.9e-58 228.8 189 62.4
PRCOL_00006028 Prasinoderma coloniale HOM05D004141 ORTHO05D005416 5.1e-58 228.4 202 55.4
SHI08479 Sapria himalayana HOM05D004141 ORTHO05D000023 5.2e-55 218.4 142 75.4
Cre02.g095147 Chlamydomonas reinhardtii HOM05D004141 ORTHO05D005416 8.9e-55 217.6 207 54.1
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 1.7e-50 203.4 198 50.5
MD03G1178900 Malus domestica HOM05D004141 ORTHO05D005416 1.2e-48 197.2 208 56.2
Haze_26741 Corylus avellana HOM05D004141 ORTHO05D005416 6.2e-48 194.9 197 49.2
Gohir.A01G053700 Gossypium hirsutum HOM05D004141 ORTHO05D005416 1.8e-47 193.4 111 83.8
Rhsim02G0229600 Rhododendron simsii HOM05D004141 ORTHO05D005416 2.0e-46 189.9 123 71.5
Rhsim12G0175600 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.9e-44 183.3 162 56.2
CBR_g988 Chara braunii HOM05D004141 ORTHO05D005416 4.0e-39 165.6 125 60.0
Cfa025499 Carpinus fangiana HOM05D004141 ORTHO05D005416 1.4e-36 157.1 199 43.7
Lalb_Chr01g0016541 Lupinus albus HOM05D004141 ORTHO05D048486 1.5e-33 147.1 86 81.4
BraA02t07239Z Brassica rapa HOM05D004141 ORTHO05D026982 6.4e-29 131.7 81 82.7
A02p22350 Brassica napus HOM05D004141 ORTHO05D026982 1.9e-28 130.2 81 82.7
C02p35890 Brassica napus HOM05D004141 ORTHO05D005416 5.4e-28 128.6 101 66.3
SHI22488 Sapria himalayana HOM05D004141 ORTHO05D005416 5.1e-26 122.1 76 73.7
vmacro11945 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 3.7e-24 115.9 188 44.1
Nitab4.5_0010088g0010 Nicotiana tabacum HOM05D004141 ORTHO05D005416 6.2e-24 115.2 103 56.3
EL10Ac3g06735 Beta vulgaris HOM05D004141 ORTHO05D026982 7.6e-22 108.2 58 82.8
MD00G1077500 Malus domestica HOM05D004141 ORTHO05D005416 1.7e-21 107.1 66 74.2
EL10Ac3g06738 Beta vulgaris HOM05D004141 ORTHO05D026982 6.5e-21 105.1 57 80.7
BcaB05g25154 Brassica carinata HOM05D004141 ORTHO05D005416 6.7e-18 95.1 50 88.0
Haze_09318 Corylus avellana HOM05D004141 ORTHO05D005416 1.2e-14 84.3 49 79.6
Rhsim08G0243200 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.5e-14 84.0 91 47.3
DCAR_013161 Daucus carota HOM05D004141 ORTHO05D005416 1.9e-12 77.0 49 73.5
Ciclev10022599m.g Citrus clementina HOM05D004141 ORTHO05D005416 3.0e-10 69.7 47 70.2
MD00G1078000 Malus domestica HOM05D004141 ORTHO05D005416 5.1e-10 68.9 44 68.2
Rhsim06G0208700 Rhododendron simsii HOM05D004141 ORTHO05D005416 2.5e-09 66.6 47 61.7
BcaC03g15838 Brassica carinata HOM05D004141 ORTHO05D005416 1.3e-08 64.3 33 97.0
Nitab4.5_0002851g0030 Nicotiana tabacum HOM05D004141 ORTHO05D005416 3.1e-07 59.7 87 43.7
Ciclev10022380m.g Citrus clementina HOM05D004141 ORTHO05D005416 9.0e-07 58.2 35 74.3
Prupe.4G169100 Prunus persica HOM05D004141 ORTHO05D005416 1.2e-06 57.8 55 60.0
MD05G1191300 Malus domestica HOM05D002084 ORTHO05D002031 1.5e-06 57.4 53 56.6


User provided reference genes

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