Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR072330 Cardamine hirsuta HOM05D001884 ORTHO05D034048 3.2e-33 144.4 70 100.0
A07p43990 Brassica napus HOM05D001884 ORTHO05D001890 1.4e-23 112.5 71 80.3
AT1G78780 Arabidopsis thaliana HOM05D001884 ORTHO05D001890 6.7e-23 110.2 59 86.4
BraA07t31906Z Brassica rapa HOM05D001884 ORTHO05D001890 6.7e-23 110.2 71 78.9
C03p92770 Brassica napus HOM05D001884 ORTHO05D001890 1.5e-22 109.0 77 74.0
Carub.0002s2561 Capsella rubella HOM05D001884 ORTHO05D001890 2.0e-22 108.6 59 84.7
Sp5g33810 Schrenkiella parvula HOM05D001884 ORTHO05D034048 3.3e-22 107.8 57 89.5
BcaB03g16035 Brassica carinata HOM05D001884 ORTHO05D001890 5.7e-22 107.1 71 76.1
AL2G39170 Arabidopsis lyrata HOM05D001884 ORTHO05D001890 8.2e-21 103.2 70 72.9
Aa31LG4G2250 Aethionema arabicum HOM05D001884 ORTHO05D001890 4.2e-17 90.9 50 82.0
PGR078G0004 Punica granatum HOM05D001884 ORTHO05D001890 5.3e-12 73.9 44 72.7
THA.LOC104812315 Tarenaya hassleriana HOM05D001884 ORTHO05D001890 1.2e-11 72.8 58 56.9
PGR031G3241 Punica granatum HOM05D001884 ORTHO05D001890 1.3e-10 69.3 44 72.7
BcaC08g47456 Brassica carinata HOM05D001884 ORTHO05D001890 6.5e-10 67.0 71 57.7
COL.COLO4_17534 Corchorus olitorius HOM05D001884 ORTHO05D001890 1.1e-09 66.2 54 51.9
Aqoxy1G02008 Aquilegia oxysepala HOM05D001884 ORTHO05D001890 3.2e-09 64.7 48 54.2
EL10Ac4g08360 Beta vulgaris HOM05D001884 ORTHO05D001890 9.4e-09 63.2 45 62.2
Ciclev10024222m.g Citrus clementina HOM05D001884 ORTHO05D001890 9.4e-09 63.2 45 62.2
Oeu031027.1 Olea europaea HOM05D001884 ORTHO05D001890 1.6e-08 62.4 45 60.0
Glyma.12G230500 Glycine max HOM05D001884 ORTHO05D001890 2.1e-08 62.0 43 62.8
AUR62037556 Chenopodium quinoa HOM05D001884 ORTHO05D001890 2.7e-08 61.6 47 57.4
Glyma.13G269100 Glycine max HOM05D001884 ORTHO05D001890 2.7e-08 61.6 44 59.1
Potri.001G389800 Populus trichocarpa HOM05D001884 ORTHO05D001890 2.7e-08 61.6 45 53.3
Manes.18G088600 Manihot esculenta HOM05D001884 ORTHO05D001890 3.6e-08 61.2 40 62.5
Thecc.08G145700 Theobroma cacao HOM05D001884 ORTHO05D001890 3.6e-08 61.2 40 62.5
AUR62019587 Chenopodium quinoa HOM05D001884 ORTHO05D001890 4.7e-08 60.8 47 57.4
CiPaw.16G017100 Carya illinoinensis HOM05D001884 ORTHO05D001890 6.1e-08 60.5 48 54.2
Manes.18G090301 Manihot esculenta HOM05D001884 ORTHO05D001890 6.1e-08 60.5 40 62.5
SGA_v2.0_scaffold48G17950 Striga asiatica HOM05D001884 ORTHO05D001890 6.1e-08 60.5 43 55.8
CAN.G809.49 Capsicum annuum HOM05D001884 ORTHO05D001890 8.0e-08 60.1 48 50.0
Cc05_g11000 Coffea canephora HOM05D001884 ORTHO05D001890 8.0e-08 60.1 43 60.5
Dinv15002 Davidia involucrata HOM05D001884 ORTHO05D001890 8.0e-08 60.1 47 51.1
Duzib116G0270 Durio zibethinus HOM05D001884 ORTHO05D001890 8.0e-08 60.1 40 62.5
Actinidia18803 Actinidia chinensis HOM05D001884 ORTHO05D001890 1.0e-07 59.7 46 54.3
CANSAT78G0214 Cannabis sativa HOM05D001884 ORTHO05D001890 1.0e-07 59.7 48 50.0
Gohir.A02G066300 Gossypium hirsutum HOM05D001884 ORTHO05D001890 1.0e-07 59.7 43 58.1
SGA_v2.0_scaffold73G24400 Striga asiatica HOM05D001884 ORTHO05D001890 1.0e-07 59.7 47 57.4
Cpa.g.sc77.21 Carica papaya HOM05D001884 ORTHO05D001890 1.4e-07 59.3 40 57.5
Dinv15001 Davidia involucrata HOM05D001884 ORTHO05D001890 1.4e-07 59.3 48 50.0
Migut.C01034 Erythranthe guttata HOM05D001884 ORTHO05D001890 1.4e-07 59.3 50 54.0
Gorai.005G081400 Gossypium raimondii HOM05D001884 ORTHO05D001890 1.4e-07 59.3 43 58.1
Nitab4.5_0007851g0010 Nicotiana tabacum HOM05D001884 ORTHO05D001890 1.4e-07 59.3 55 45.5
Thecc.07G118000 Theobroma cacao HOM05D001884 ORTHO05D034048 1.4e-07 59.3 55 52.7
MELO3C008404.2 Cucumis melo HOM05D001884 ORTHO05D001890 1.8e-07 58.9 40 57.5
Hma1.2p1_0107F.1_g051510 Hydrangea macrophylla HOM05D001884 ORTHO05D001890 1.8e-07 58.9 40 57.5
MBI06_g36542_MAGBIO Magnolia biondii HOM05D001884 ORTHO05D001890 1.8e-07 58.9 43 55.8
Potri.011G108900 Populus trichocarpa HOM05D001884 ORTHO05D001890 1.8e-07 58.9 59 44.1
TPR.G16069 Trifolium pratense HOM05D001884 ORTHO05D001890 1.8e-07 58.9 43 60.5
VMungo1080G0136 Vigna mungo HOM05D001884 ORTHO05D001890 1.8e-07 58.9 43 58.1
MSTRG.25328 Avicennia marina HOM05D001884 ORTHO05D001890 3.0e-07 58.2 48 47.9
ClCG08G006500 Citrullus lanatus HOM05D001884 ORTHO05D001890 3.0e-07 58.2 40 57.5
Ciclev10021966m.g Citrus clementina HOM05D001884 ORTHO05D001890 3.0e-07 58.2 51 52.9
ECA236G1119 Erigeron canadensis HOM05D001884 ORTHO05D001890 3.0e-07 58.2 45 48.9
Phvul.005G081500 Phaseolus vulgaris HOM05D001884 ORTHO05D001890 3.0e-07 58.2 43 55.8
TAR625G1182 Trochodendron aralioides HOM05D001884 ORTHO05D001890 3.0e-07 58.2 48 50.0
CSS0031515 Camellia sinensis var. sinensis HOM05D001884 ORTHO05D001890 4.0e-07 57.8 49 46.9
Ciclev10023544m.g Citrus clementina HOM05D001884 ORTHO05D001890 4.0e-07 57.8 45 57.8
Duzib093G2258 Durio zibethinus HOM05D001884 ORTHO05D001890 4.0e-07 57.8 63 47.6
Thhalv10019070m.g Eutrema salsugineum HOM05D001884 ORTHO05D001890 4.0e-07 57.8 46 54.3
Gohir.D02G072201 Gossypium hirsutum HOM05D001884 ORTHO05D001890 4.0e-07 57.8 43 55.8
Medtr2g076070 Medicago truncatula HOM05D001884 ORTHO05D001890 4.0e-07 57.8 43 60.5
Potri.001G389400 Populus trichocarpa HOM05D001884 ORTHO05D001890 4.0e-07 57.8 40 57.5
TPR.G16067 Trifolium pratense HOM05D001884 ORTHO05D001890 4.0e-07 57.8 43 60.5
MSTRG.14966 Avicennia marina HOM05D001884 ORTHO05D001890 5.2e-07 57.4 43 55.8
CSS0044365 Camellia sinensis var. sinensis HOM05D001884 ORTHO05D001890 5.2e-07 57.4 49 46.9
Cfa018353 Carpinus fangiana HOM05D001884 ORTHO05D001890 5.2e-07 57.4 42 57.1
Haze_09317 Corylus avellana HOM05D001884 ORTHO05D001890 5.2e-07 57.4 47 48.9
CsaV3_6G030910 Cucumis sativus L. HOM05D001884 ORTHO05D001890 5.2e-07 57.4 40 57.5
Migut.M00718 Erythranthe guttata HOM05D001884 ORTHO05D001890 5.2e-07 57.4 42 52.4
HanXRQChr11g0331021 Helianthus annuus HOM05D001884 ORTHO05D001890 5.2e-07 57.4 46 54.3
arahy.Tifrunner.gnm1.ann1.81H9V0 Arachis hypogaea HOM05D001884 ORTHO05D001890 6.7e-07 57.0 40 55.0
arahy.Tifrunner.gnm1.ann1.FJG18T Arachis hypogaea HOM05D001884 ORTHO05D001890 6.7e-07 57.0 40 60.0
arahy.Tifrunner.gnm1.ann1.NV60S8 Arachis hypogaea HOM05D001884 ORTHO05D001890 6.7e-07 57.0 40 55.0
arahy.Tifrunner.gnm1.ann1.P2KAM9 Arachis hypogaea HOM05D001884 ORTHO05D001890 6.7e-07 57.0 40 60.0
CiPaw.16G017000 Carya illinoinensis HOM05D001884 ORTHO05D001890 6.7e-07 57.0 48 52.1
Ca_03958_v3 Cicer arietinum L. HOM05D001884 ORTHO05D001890 6.7e-07 57.0 40 62.5
Eucgr.F02733 Eucalyptus grandis HOM05D001884 ORTHO05D001890 6.7e-07 57.0 40 55.0
Gohir.A01G053500 Gossypium hirsutum HOM05D001884 ORTHO05D001890 6.7e-07 57.0 48 47.9
Lj7A365T39 Lonicera japonica HOM05D001884 ORTHO05D001890 6.7e-07 57.0 40 55.0
Lj1g0012413 Lotus japonicus HOM05D001884 ORTHO05D001890 6.7e-07 57.0 48 47.9
Lj1g0021797 Lotus japonicus HOM05D001884 ORTHO05D001890 6.7e-07 57.0 48 47.9
Nn3g21126 Nelumbo nucifera HOM05D001884 ORTHO05D001890 6.7e-07 57.0 43 51.2
Peaxi162Scf00000g00682 Petunia axillaris HOM05D001884 ORTHO05D001890 6.7e-07 57.0 48 50.0
TWI34G0401 Tripterygium wilfordii HOM05D001884 ORTHO05D001890 6.7e-07 57.0 54 46.3
CSS0010745 Camellia sinensis var. sinensis HOM05D001884 ORTHO05D001890 8.8e-07 56.6 49 46.9
CSS0013345 Camellia sinensis var. sinensis HOM05D001884 ORTHO05D001890 8.8e-07 56.6 49 46.9
CSS0018843 Camellia sinensis var. sinensis HOM05D001884 ORTHO05D001890 8.8e-07 56.6 40 60.0
Lalb_Chr25g0285801 Lupinus albus HOM05D001884 ORTHO05D001890 8.8e-07 56.6 56 48.2
Medtr2g076010 Medicago truncatula HOM05D001884 ORTHO05D001890 8.8e-07 56.6 43 60.5
Zm00001eb127300 Zea mays HOM05D001884 ORTHO05D001890 8.8e-07 56.6 48 47.9
Atru.chr13.1714 Acer truncatum HOM05D001884 ORTHO05D001890 1.2e-06 56.2 48 50.0
CSS0014873 Camellia sinensis var. sinensis HOM05D001884 ORTHO05D001890 1.2e-06 56.2 40 60.0
CSS0023249 Camellia sinensis var. sinensis HOM05D001884 ORTHO05D001890 1.2e-06 56.2 40 57.5
CSS0042211 Camellia sinensis var. sinensis HOM05D001884 ORTHO05D001890 1.2e-06 56.2 58 46.6
Dinv25816 Davidia involucrata HOM05D001884 ORTHO05D001890 1.2e-06 56.2 48 52.1
MBI06_g15764_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 1.2e-06 56.2 39 59.0
Potri.005G188300 Populus trichocarpa HOM05D001884 ORTHO05D001890 1.2e-06 56.2 42 57.1
Prupe.8G020800 Prunus persica HOM05D001884 ORTHO05D001890 1.2e-06 56.2 41 56.1
TAR628G0105 Trochodendron aralioides HOM05D001884 ORTHO05D001890 1.2e-06 56.2 43 53.5
GSVIVG01010045001 Vitis vinifera HOM05D001884 ORTHO05D001890 1.2e-06 56.2 48 50.0
Actinidia01139 Actinidia chinensis HOM05D001884 ORTHO05D001890 1.5e-06 55.8 48 50.0
Haze_17706 Corylus avellana HOM05D001884 ORTHO05D001890 1.5e-06 55.8 42 54.8
Dinv41116 Davidia involucrata HOM05D001884 ORTHO05D001890 1.5e-06 55.8 40 57.5
Glyma.06G123800 Glycine max HOM05D001884 ORTHO05D001890 1.5e-06 55.8 48 45.8
Gohir.A01G053600 Gossypium hirsutum HOM05D001884 ORTHO05D001890 1.5e-06 55.8 48 45.8
HanXRQChr04g0109391 Helianthus annuus HOM05D001884 ORTHO05D001890 1.5e-06 55.8 40 57.5
Sc04g0007990 Simmondsia chinensis HOM05D001884 ORTHO05D001890 1.5e-06 55.8 40 52.5
Duzib213G0216 Durio zibethinus HOM05D001884 ORTHO05D001890 2.0e-06 55.5 42 54.8
Lalb_Chr01g0006841 Lupinus albus HOM05D001884 ORTHO05D001890 2.0e-06 55.5 48 50.0
MBI06_g15766_MAGBIO Magnolia biondii HOM05D001884 ORTHO05D001890 2.0e-06 55.5 43 51.2
QL02p025012 Quercus lobata HOM05D001884 ORTHO05D001890 2.0e-06 55.5 40 60.0
Hund26718 Selenicereus undatus HOM05D001884 ORTHO05D001890 2.0e-06 55.5 40 55.0
C06p52670 Brassica napus HOM05D001884 ORTHO05D001890 2.6e-06 55.1 40 57.5
CiPaw.12G113300 Carya illinoinensis HOM05D001884 ORTHO05D001890 2.6e-06 55.1 44 52.3
COL.COLO4_17531 Corchorus olitorius HOM05D001884 ORTHO05D001890 2.6e-06 55.1 48 45.8
Duzib213G0777 Durio zibethinus HOM05D001884 ORTHO05D001890 2.6e-06 55.1 42 54.8
HanXRQChr02g0055231 Helianthus annuus HOM05D001884 ORTHO05D001890 2.6e-06 55.1 40 57.5
Lj4C692T6 Lonicera japonica HOM05D001884 ORTHO05D001890 2.6e-06 55.1 40 55.0
Peaxi162Scf00263g00515 Petunia axillaris HOM05D001884 ORTHO05D001890 2.6e-06 55.1 48 50.0
Peaxi162Scf00263g00516 Petunia axillaris HOM05D001884 ORTHO05D001890 2.6e-06 55.1 48 50.0
Psat5g237200 Pisum sativum HOM05D001884 ORTHO05D001890 2.6e-06 55.1 40 60.0
Prupe.8G020900 Prunus persica HOM05D001884 ORTHO05D001890 2.6e-06 55.1 48 50.0
Rhsim04G0026800 Rhododendron simsii HOM05D001884 ORTHO05D001890 2.6e-06 55.1 42 57.1
Rhsim04G0026900 Rhododendron simsii HOM05D001884 ORTHO05D001890 2.6e-06 55.1 42 57.1
PGSC0003DMG400024843 Solanum tuberosum HOM05D001884 ORTHO05D001890 2.6e-06 55.1 48 50.0
Aqoxy5G01618 Aquilegia oxysepala HOM05D001884 ORTHO05D001890 3.3e-06 54.7 59 45.8
Aqoxy5G01662 Aquilegia oxysepala HOM05D001884 ORTHO05D001890 3.3e-06 54.7 59 45.8
CSS0017648 Camellia sinensis var. sinensis HOM05D001884 ORTHO05D001890 3.3e-06 54.7 40 57.5
Lsat_1_v5_gn_1_7361 Lactuca sativa HOM05D001884 ORTHO05D001890 3.3e-06 54.7 40 55.0
Medtr8g058350 Medicago truncatula HOM05D001884 ORTHO05D001890 3.3e-06 54.7 44 52.3
Potri.005G188400 Populus trichocarpa HOM05D001884 ORTHO05D001890 3.3e-06 54.7 42 54.8
Prupe.8G021200 Prunus persica HOM05D001884 ORTHO05D001890 3.3e-06 54.7 40 57.5
Cpa.g.sc77.18 Carica papaya HOM05D001884 ORTHO05D001890 4.4e-06 54.3 47 46.8
Eucgr.F02732 Eucalyptus grandis HOM05D001884 ORTHO05D001890 4.4e-06 54.3 48 47.9
Gohir.1Z049314 Gossypium hirsutum HOM05D001884 ORTHO05D001890 4.4e-06 54.3 40 57.5
Gohir.D03G061400 Gossypium hirsutum HOM05D001884 ORTHO05D001890 4.4e-06 54.3 40 57.5
Gorai.013G105200 Gossypium raimondii HOM05D001884 ORTHO05D001890 4.4e-06 54.3 40 57.5
Os01g0731600 Oryza sativa ssp. japonica HOM05D001884 ORTHO05D001890 4.4e-06 54.3 40 57.5
QL08p026152 Quercus lobata HOM05D001884 ORTHO05D001890 4.4e-06 54.3 45 51.1
Sed0007472 Sechium edule HOM05D001884 ORTHO05D001890 4.4e-06 54.3 40 55.0
TAR628G0814 Trochodendron aralioides HOM05D001884 ORTHO05D001890 4.4e-06 54.3 40 57.5
TAR628G1634 Trochodendron aralioides HOM05D001884 ORTHO05D001890 4.4e-06 54.3 40 57.5
Gohir.D01G042706 Gossypium hirsutum HOM05D001884 ORTHO05D001890 5.7e-06 53.9 48 45.8
Gorai.002G053900 Gossypium raimondii HOM05D001884 ORTHO05D001890 5.7e-06 53.9 48 45.8
Nn1g06192 Nelumbo nucifera HOM05D001884 ORTHO05D001890 5.7e-06 53.9 48 47.9
Nitab4.5_0018289g0010 Nicotiana tabacum HOM05D001884 ORTHO05D001890 5.7e-06 53.9 49 46.9
RcHm_v2.0_Chr6g0276861 Rosa chinensis HOM05D001884 ORTHO05D001890 5.7e-06 53.9 40 55.0
RcHm_v2.0_Chr6g0276891 Rosa chinensis HOM05D001884 ORTHO05D001890 5.7e-06 53.9 40 55.0
Sp5g33800 Schrenkiella parvula HOM05D001884 ORTHO05D001890 5.7e-06 53.9 40 55.0
PGSC0003DMG400015388 Solanum tuberosum HOM05D001884 ORTHO05D001890 5.7e-06 53.9 49 44.9
Thecc.08G145600 Theobroma cacao HOM05D001884 ORTHO05D001890 5.7e-06 53.9 40 55.0
arahy.Tifrunner.gnm1.ann1.88MUGQ Arachis hypogaea HOM05D001884 ORTHO05D001890 7.5e-06 53.5 44 50.0
CiPaw.15G020900 Carya illinoinensis HOM05D001884 ORTHO05D001890 7.5e-06 53.5 42 52.4
DCAR_030716 Daucus carota HOM05D001884 ORTHO05D001890 7.5e-06 53.5 40 50.0
Gohir.D01G042708 Gossypium hirsutum HOM05D001884 ORTHO05D001890 7.5e-06 53.5 48 43.8
Sabra11G0096400 Salix brachista HOM05D001884 ORTHO05D001890 7.5e-06 53.5 59 42.4
Thecc.07G118100 Theobroma cacao HOM05D001884 ORTHO05D001890 7.5e-06 53.5 40 52.5
Atru.chr2.2127 Acer truncatum HOM05D001884 ORTHO05D001890 9.7e-06 53.1 51 51.0
ClCG11G000530 Citrullus lanatus HOM05D001884 ORTHO05D001890 9.7e-06 53.1 43 53.5
Duzib116G0211 Durio zibethinus HOM05D001884 ORTHO05D001890 9.7e-06 53.1 40 55.0
FAN15G0884 Fragaria x ananassa HOM05D001884 ORTHO05D001890 9.7e-06 53.1 40 55.0
Glyma.06G123700 Glycine max HOM05D001884 ORTHO05D001890 9.7e-06 53.1 48 50.0
Nn2g15016 Nelumbo nucifera HOM05D001884 ORTHO05D001890 9.7e-06 53.1 59 45.8
Nn2g15024 Nelumbo nucifera HOM05D001884 ORTHO05D001890 9.7e-06 53.1 59 45.8
Nn2g15025 Nelumbo nucifera HOM05D001884 ORTHO05D001890 9.7e-06 53.1 59 45.8
Nn5g28643 Nelumbo nucifera HOM05D001884 ORTHO05D001890 9.7e-06 53.1 59 45.8
Nitab4.5_0010768g0030 Nicotiana tabacum HOM05D001884 ORTHO05D001890 9.7e-06 53.1 48 47.9
PGR042G3199 Punica granatum HOM05D001884 ORTHO05D001890 9.7e-06 53.1 40 57.5
Sed0021514 Sechium edule HOM05D001884 ORTHO05D001890 9.7e-06 53.1 40 52.5
TWI60G0479 Tripterygium wilfordii HOM05D001884 ORTHO05D001890 9.7e-06 53.1 40 55.0


User provided reference genes

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