Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR072030 Cardamine hirsuta HOM05D005685 ORTHO05D007046 0.0e+00 1409.8 702 100.0
AT1G78540 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 0.0e+00 1117.8 667 83.7
Carub.0002s2539 Capsella rubella HOM05D005685 ORTHO05D007046 1.4e-311 1072.4 667 80.4
Thhalv10018251m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 4.8e-310 1067.4 667 81.0
Sp5g33630 Schrenkiella parvula HOM05D005685 ORTHO05D007046 8.9e-309 1063.1 676 79.1
AL2G38940 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 1.5e-295 1019.2 610 83.8
THA.LOC104808083 Tarenaya hassleriana HOM05D005685 ORTHO05D007046 5.0e-275 951.0 692 70.4
Sp1g15160 Schrenkiella parvula HOM05D005685 ORTHO05D007046 2.5e-274 948.7 683 70.7
Thhalv10006979m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 7.2e-274 947.2 693 70.1
AL7G51000 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 3.0e-264 915.2 681 68.4
Carub.0001s1676 Capsella rubella HOM05D005685 ORTHO05D007046 1.7e-259 899.4 687 67.5
CARHR017570 Cardamine hirsuta HOM05D005685 ORTHO05D007046 5.2e-256 887.9 707 64.8
BraA06t24453Z Brassica rapa HOM05D005685 ORTHO05D007046 1.7e-254 882.9 684 65.2
A06p12940 Brassica napus HOM05D005685 ORTHO05D007046 3.1e-253 878.6 684 65.6
Aa31LG4G2430 Aethionema arabicum HOM05D005685 ORTHO05D007046 9.1e-253 877.1 650 69.8
C05p15360 Brassica napus HOM05D005685 ORTHO05D007046 1.2e-252 876.7 687 64.6
Aa31LG7G1870 Aethionema arabicum HOM05D005685 ORTHO05D007046 6.5e-251 870.9 681 65.6
BolC5t30242H Brassica oleracea HOM05D005685 ORTHO05D007046 5.2e-248 861.3 714 62.2
AT1G17040 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 2.6e-239 832.4 650 65.2
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 2.5e-218 762.7 580 67.2
Cpa.g.sc77.65 Carica papaya HOM05D005685 ORTHO05D007046 2.0e-215 753.1 664 58.6
Haze_08449 Corylus avellana HOM05D005685 ORTHO05D007046 2.0e-191 673.3 721 51.5
Lj1g0015970 Lotus japonicus HOM05D005685 ORTHO05D007046 1.4e-189 667.2 705 50.1
Dinv13349 Davidia involucrata HOM05D005685 ORTHO05D007046 3.2e-189 666.0 717 49.9
BcaC05g25679 Brassica carinata HOM05D005685 ORTHO05D007046 2.3e-187 659.8 554 62.1
Hma1.2p1_0713F.1_g207810 Hydrangea macrophylla HOM05D005685 ORTHO05D007046 3.3e-186 656.0 718 49.3
GSVIVG01014072001 Vitis vinifera HOM05D005685 ORTHO05D007046 3.3e-186 656.0 670 51.6
Phvul.011G173500 Phaseolus vulgaris HOM05D005685 ORTHO05D007046 9.0e-184 647.9 710 49.6
VMungo1127G1789 Vigna mungo HOM05D005685 ORTHO05D007046 9.0e-184 647.9 711 49.9
CiPaw.11G154400 Carya illinoinensis HOM05D005685 ORTHO05D007046 1.2e-183 647.5 708 50.6
Lalb_Chr19g0133681 Lupinus albus HOM05D005685 ORTHO05D007046 3.4e-183 646.0 718 49.3
Actinidia12613 Actinidia chinensis HOM05D005685 ORTHO05D007046 2.2e-182 643.3 706 48.9
CSS0007667 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 4.6e-180 635.6 720 49.4
Gohir.A11G290000 Gossypium hirsutum HOM05D005685 ORTHO05D007046 7.9e-180 634.8 702 50.3
Ciclev10019120m.g Citrus clementina HOM05D005685 ORTHO05D007046 6.7e-179 631.7 709 49.2
Gohir.D11G302400 Gossypium hirsutum HOM05D005685 ORTHO05D007046 3.3e-178 629.4 702 50.0
Prupe.4G154100 Prunus persica HOM05D005685 ORTHO05D007046 3.1e-176 622.9 689 49.3
Gorai.007G332400 Gossypium raimondii HOM05D005685 ORTHO05D007046 6.9e-176 621.7 702 49.7
CsaV3_4G032730 Cucumis sativus L. HOM05D005685 ORTHO05D007046 1.2e-175 620.9 714 48.3
MD11G1273300 Malus domestica HOM05D005685 ORTHO05D007046 1.5e-175 620.5 707 48.9
Atru.chr2.1911 Acer truncatum HOM05D005685 ORTHO05D007046 2.0e-175 620.2 705 47.7
ClCG11G017070 Citrullus lanatus HOM05D005685 ORTHO05D007046 7.1e-173 611.7 715 47.3
Manes.03G084500 Manihot esculenta HOM05D005685 ORTHO05D007046 3.5e-172 609.4 674 50.0
CANSAT56G0504 Cannabis sativa HOM05D005685 ORTHO05D007046 4.6e-172 609.0 718 47.9
TAR605G0002 Trochodendron aralioides HOM05D005685 ORTHO05D007046 1.3e-171 607.4 719 47.3
BcaB02g06680 Brassica carinata HOM05D005685 ORTHO05D007046 3.3e-170 602.8 501 64.5
Medtr8g461480 Medicago truncatula HOM05D005685 ORTHO05D007046 4.3e-170 602.4 692 48.1
Psat4g139160 Pisum sativum HOM05D005685 ORTHO05D007046 1.6e-169 600.5 717 47.3
FvH4_3g17370 Fragaria vesca HOM05D005685 ORTHO05D007046 2.1e-169 600.1 689 47.8
Sed0016294 Sechium edule HOM05D005685 ORTHO05D007046 1.8e-168 597.0 711 48.0
Nn1g00647 Nelumbo nucifera HOM05D005685 ORTHO05D007046 1.5e-167 594.0 721 46.6
PGR031G3876 Punica granatum HOM05D005685 ORTHO05D007046 2.6e-167 593.2 709 47.7
RhsimUnG0165000 Rhododendron simsii HOM05D005685 ORTHO05D007046 1.3e-166 590.9 656 48.8
Thecc.07G137700 Theobroma cacao HOM05D005685 ORTHO05D007046 1.7e-166 590.5 638 51.4
Potri.001G380900 Populus trichocarpa HOM05D005685 ORTHO05D007046 2.2e-166 590.1 711 47.5
Cc05_g10550 Coffea canephora HOM05D005685 ORTHO05D007046 4.2e-165 585.9 717 45.6
FAN25G1369 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.2e-164 584.3 705 47.0
Potri.011G102100 Populus trichocarpa HOM05D005685 ORTHO05D007046 2.1e-164 583.6 712 47.9
Sabra11G0083400 Salix brachista HOM05D005685 ORTHO05D007046 1.8e-163 580.5 712 47.2
Sabra16G0251100 Salix brachista HOM05D005685 ORTHO05D007046 6.7e-163 578.6 738 46.6
TPR.G16474 Trifolium pratense HOM05D005685 ORTHO05D007046 1.1e-162 577.8 677 47.0
PSO063G4015 Papaver somniferum HOM05D005685 ORTHO05D007046 1.9e-162 577.0 705 44.8
PSO782G3742 Papaver somniferum HOM05D005685 ORTHO05D007046 3.7e-161 572.8 705 44.7
Sc03g0010780 Simmondsia chinensis HOM05D005685 ORTHO05D007046 3.4e-159 566.2 705 46.1
Duzib213G0171 Durio zibethinus HOM05D005685 ORTHO05D007046 5.9e-159 565.5 704 45.6
DCAR_017584 Daucus carota HOM05D005685 ORTHO05D007046 5.0e-158 562.4 716 45.3
MSTRG.14992 Avicennia marina HOM05D005685 ORTHO05D007046 1.9e-157 560.5 713 43.5
RhsimUnG0224400 Rhododendron simsii HOM05D005685 ORTHO05D007046 5.5e-157 558.9 728 44.4
EL10Ac4g08448 Beta vulgaris HOM05D005685 ORTHO05D007046 7.2e-157 558.5 715 44.2
RhsimUnG0060100 Rhododendron simsii HOM05D005685 ORTHO05D007046 1.2e-156 557.8 656 47.0
Sopen07g030310 Solanum pennellii HOM05D005685 ORTHO05D007046 2.7e-156 556.6 719 43.4
Migut.M00685 Erythranthe guttata HOM05D005685 ORTHO05D007046 6.1e-156 555.4 702 45.3
Solyc07g062050.3 Solanum lycopersicum HOM05D005685 ORTHO05D007046 1.3e-155 554.3 719 43.3
MELO3C016678.2 Cucumis melo HOM05D005685 ORTHO05D007046 6.7e-155 552.0 754 43.2
SalBow8G2073 Salvia bowleyana HOM05D005685 ORTHO05D007046 3.7e-153 546.2 738 43.1
CAN.G375.61 Capsicum annuum HOM05D005685 ORTHO05D007046 1.4e-152 544.3 711 43.0
FAN16G1001 Fragaria x ananassa HOM05D005685 ORTHO05D007046 3.1e-152 543.1 689 44.7
FAN21G3337 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.2e-151 541.2 715 43.8
HanXRQChr10g0305611 Helianthus annuus HOM05D005685 ORTHO05D007046 4.5e-151 539.3 710 44.1
Lsat_1_v5_gn_5_126281 Lactuca sativa HOM05D005685 ORTHO05D007046 1.4e-149 534.3 706 42.4
Aqoxy4G01266 Aquilegia oxysepala HOM05D005685 ORTHO05D007046 1.1e-146 524.6 725 42.1
Ca_12745_v3 Cicer arietinum L. HOM05D005685 ORTHO05D007046 5.7e-146 522.3 664 46.2
Peaxi162Scf00111g01236 Petunia axillaris HOM05D005685 ORTHO05D007046 3.7e-145 519.6 671 42.5
COL.COLO4_17454 Corchorus olitorius HOM05D005685 ORTHO05D007046 1.1e-141 508.1 711 44.0
SGA_v2.0_scaffold73G24373 Striga asiatica HOM05D005685 ORTHO05D007046 1.9e-141 507.3 683 43.6
vmacro11986 Vaccinium macrocarpon HOM05D005685 ORTHO05D007046 3.0e-139 500.0 722 42.2
Ah.03g134490 Amaranthus hybridus HOM05D005685 ORTHO05D007046 8.8e-139 498.4 717 41.8
ATR0665G442 Amborella trichopoda HOM05D005685 ORTHO05D007046 3.1e-136 490.0 710 41.7
Cfa019501 Carpinus fangiana HOM05D005685 ORTHO05D007046 3.5e-135 486.5 550 50.9
Lj1C822G13 Lonicera japonica HOM05D005685 ORTHO05D007046 4.5e-135 486.1 665 42.7
AUR62019678 Chenopodium quinoa HOM05D005685 ORTHO05D007046 1.3e-134 484.6 727 41.4
Nitab4.5_0001140g0120 Nicotiana tabacum HOM05D005685 ORTHO05D007046 7.2e-133 478.8 724 39.6
PGSC0003DMG400007083 Solanum tuberosum HOM05D005685 ORTHO05D007046 1.2e-132 478.0 772 37.4
AUR62013935 Chenopodium quinoa HOM05D005685 ORTHO05D007046 3.7e-129 466.5 670 40.9
Zm00001eb004590 Zea mays HOM05D005685 ORTHO05D007046 6.5e-126 455.7 670 40.1
BraA06t26874Z Brassica rapa HOM05D005685 ORTHO05D007046 2.0e-122 444.1 358 64.0
unitig_747.g21593 Utricularia gibba HOM05D005685 ORTHO05D007046 1.8e-120 437.6 700 38.3
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 1.2e-116 424.9 678 40.3
AagrBONN_evm.TU.Sc2ySwM_228.1006 Anthoceros agrestis HOM05D005685 ORTHO05D007046 5.4e-112 409.5 774 34.8
DCAR_013783 Daucus carota HOM05D005685 ORTHO05D007046 1.9e-109 401.0 667 37.0
Pp3c20_21160 Physcomitrium patens HOM05D005685 ORTHO05D007046 1.0e-107 395.2 773 35.2
SMO351G0414 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 8.9e-107 392.1 654 35.8
Glyma.15G211900 Glycine max HOM05D005685 ORTHO05D007046 1.7e-102 377.9 510 44.1
arahy.Tifrunner.gnm1.ann1.4M0U4E Arachis hypogaea HOM05D005685 ORTHO05D007046 8.3e-97 359.0 521 42.8
arahy.Tifrunner.gnm1.ann1.TIF1LK Arachis hypogaea HOM05D005685 ORTHO05D007046 8.3e-97 359.0 521 43.0
Mapoly0011s0171 Marchantia polymorpha HOM05D005685 ORTHO05D007046 3.5e-95 353.6 734 33.1
SEGI_25985 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 7.8e-95 352.4 633 34.6
HPP92_014870 Vanilla planifolia HOM05D005685 ORTHO05D007046 5.2e-91 339.7 611 34.9
Nitab4.5_0003618g0060 Nicotiana tabacum HOM05D005685 ORTHO05D007046 4.9e-89 333.2 772 30.6
RcHm_v2.0_Chr5g0028891 Rosa chinensis HOM05D005685 ORTHO05D007046 3.5e-87 327.0 278 58.3
Eucgr.F03221 Eucalyptus grandis HOM05D005685 ORTHO05D007046 2.5e-85 320.9 369 48.8
FAN11G3672 Fragaria x ananassa HOM05D005685 ORTHO05D007046 2.5e-85 320.9 480 40.2
CSS0011531 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 7.3e-85 319.3 432 44.4
TWI38G0887 Tripterygium wilfordii HOM05D005685 ORTHO05D007046 2.8e-84 317.4 252 59.9
RhsimUnG0062900 Rhododendron simsii HOM05D005685 ORTHO05D007046 3.2e-80 303.9 474 41.6
Glyma.15G212100 Glycine max HOM05D005685 ORTHO05D007046 1.3e-70 271.9 217 60.8
CDE04G2909 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 4.0e-67 260.4 492 35.0
Os10g0567300 Oryza sativa ssp. japonica HOM05D005685 ORTHO05D007046 9.0e-59 232.6 252 44.8
Eucgr.F03222 Eucalyptus grandis HOM05D005685 ORTHO05D007046 1.1e-51 209.1 342 39.8
CDE04G0489 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 3.2e-40 171.0 309 36.6
CSS0047371 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 4.6e-39 167.2 120 63.3
MBI19_g17443_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 1.4e-19 102.4 104 50.0
Zm00001eb210210 Zea mays HOM05D005685 ORTHO05D007046 1.2e-18 99.4 157 42.0
A08p10430 Brassica napus HOM05D005685 ORTHO05D007046 5.9e-18 97.1 97 54.6
Mapoly0028s0082 Marchantia polymorpha HOM05D005685 ORTHO05D007046 2.6e-13 81.6 125 41.6
SEGI_34067 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 4.4e-13 80.9 127 37.0
Pp3c7_2410 Physcomitrium patens HOM05D005685 ORTHO05D007046 1.3e-12 79.3 210 32.9
SMO145G0004 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 6.3e-12 77.0 132 40.2
CBR_g19551 Chara braunii HOM05D005685 ORTHO05D007046 4.1e-11 74.3 125 38.4
CSS0003149 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 1.5e-08 65.9 78 46.2
CBR_g28498 Chara braunii HOM05D005685 ORTHO05D007046 5.5e-08 63.9 71 45.1
SEGI_05558 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 1.0e-06 59.7 101 32.7


User provided reference genes

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