Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 1.9e-150 536.2 347 100.0
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 4.7e-133 478.4 349 92.6
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 7.7e-128 461.1 356 86.0
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 3.9e-124 448.7 350 87.7
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 7.0e-121 438.0 350 86.0
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 3.0e-116 422.5 356 73.9
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 3.0e-116 422.5 356 73.9
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 3.0e-116 422.5 356 73.9
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 4.0e-116 422.2 352 74.1
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 1.5e-115 420.2 352 79.0
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 1.8e-113 413.3 359 81.9
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 4.1e-113 412.1 356 83.1
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 2.7e-112 409.5 351 74.6
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 5.0e-111 405.2 351 76.4
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 4.7e-109 398.7 359 80.2
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 1.3e-106 390.6 351 73.2
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 1.7e-106 390.2 351 72.4
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 4.8e-106 388.7 351 72.4
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 5.4e-105 385.2 353 72.5
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 9.1e-105 384.4 353 72.5
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 5.9e-104 381.7 358 77.9
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 5.9e-104 381.7 358 77.9
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 5.9e-104 381.7 358 77.9
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 3.0e-100 369.4 351 64.7
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 5.6e-86 322.0 354 62.1
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 6.2e-85 318.5 348 60.3
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 4.4e-75 285.8 352 54.3
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 5.8e-75 285.4 351 59.3
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 1.9e-73 280.4 351 56.4
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 6.0e-72 275.4 353 59.5
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 1.0e-71 274.6 351 52.7
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 1.0e-71 274.6 351 52.4
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 2.3e-71 273.5 354 57.1
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 5.6e-70 268.9 345 60.3
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 2.8e-69 266.5 369 56.1
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 8.9e-68 261.5 362 48.6
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 2.6e-67 260.0 371 52.3
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 5.8e-67 258.8 354 52.5
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 1.3e-66 257.7 348 49.1
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 2.2e-66 256.9 367 52.9
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 2.9e-66 256.5 359 51.3
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 3.8e-66 256.1 352 51.1
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 6.4e-66 255.4 356 54.5
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 1.9e-65 253.8 359 58.2
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 4.2e-65 252.7 359 48.7
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 7.1e-65 251.9 359 47.4
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 9.3e-65 251.5 354 50.3
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 1.2e-64 251.1 354 51.7
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 1.6e-64 250.8 365 50.4
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 2.7e-64 250.0 360 48.9
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 4.6e-64 249.2 356 47.2
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 1.3e-63 247.7 359 48.2
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 1.7e-63 247.3 350 50.3
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 2.3e-63 246.9 366 48.1
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 3.0e-63 246.5 359 49.3
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 3.0e-63 246.5 358 48.0
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 3.9e-63 246.1 345 50.7
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 6.6e-63 245.4 359 47.9
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 8.7e-63 245.0 359 46.5
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 8.7e-63 245.0 371 49.1
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 2.5e-62 243.4 349 52.7
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 4.3e-62 242.7 347 49.3
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 4.3e-62 242.7 347 49.3
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 4.3e-62 242.7 347 49.3
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 4.3e-62 242.7 378 46.8
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 4.3e-62 242.7 358 48.9
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 5.6e-62 242.3 367 47.7
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 9.6e-62 241.5 352 52.0
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 9.6e-62 241.5 358 50.3
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 9.6e-62 241.5 362 47.8
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 3.6e-61 239.6 376 48.7
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 2.4e-60 236.9 377 46.7
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 5.3e-60 235.7 353 49.3
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 5.3e-60 235.7 355 50.1
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 5.3e-60 235.7 339 51.6
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 6.9e-60 235.3 367 49.9
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.5e-59 234.2 359 50.1
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 2.6e-59 233.4 348 44.8
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 3.4e-59 233.0 366 57.9
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 4.4e-59 232.6 352 50.6
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 5.8e-59 232.3 347 46.4
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 7.6e-59 231.9 360 49.4
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.3e-58 231.1 362 47.8
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 2.9e-58 229.9 347 45.8
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 2.9e-58 229.9 359 48.7
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 4.9e-58 229.2 367 47.1
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 1.4e-57 227.6 358 46.4
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 1.4e-57 227.6 341 51.9
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 1.9e-57 227.3 365 49.9
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 2.4e-57 226.9 373 45.8
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 5.4e-57 225.7 345 54.8
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 1.2e-56 224.6 346 43.6
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 1.2e-56 224.6 369 45.0
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 2.1e-56 223.8 366 50.0
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 2.3e-55 220.3 355 41.4
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 2.3e-55 220.3 369 47.2
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 5.1e-55 219.2 370 46.8
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 3.3e-54 216.5 369 48.0
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 4.3e-54 216.1 359 44.8
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 7.3e-54 215.3 350 48.3
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 1.6e-53 214.2 351 45.6
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 4.8e-53 212.6 334 48.8
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 4.8e-53 212.6 372 48.9
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 1.1e-52 211.5 372 40.1
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 1.1e-52 211.5 362 49.4
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 3.1e-52 209.9 368 46.5
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 6.9e-52 208.8 336 51.2
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 2.0e-51 207.2 369 52.8
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 2.2e-50 203.8 336 45.5
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 1.4e-49 201.1 367 48.8
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 1.9e-49 200.7 353 50.1
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 2.4e-49 200.3 274 46.4
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 1.2e-48 198.0 357 39.2
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 1.2e-48 198.0 356 44.7
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 3.5e-48 196.4 345 45.2
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 6.0e-48 195.7 285 51.6
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 7.9e-48 195.3 344 43.9
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 7.9e-48 195.3 352 41.5
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 1.8e-47 194.1 338 48.2
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.8e-47 194.1 336 47.3
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 6.7e-47 192.2 169 60.4
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 8.7e-47 191.8 340 39.7
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 5.6e-46 189.1 374 46.0
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 5.6e-46 189.1 349 44.1
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 7.4e-46 188.7 347 45.0
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 7.4e-46 188.7 347 47.8
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.3e-45 188.0 336 49.7
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 1.3e-45 188.0 342 43.9
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 1.1e-44 184.9 338 44.7
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 2.4e-44 183.7 340 50.3
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 9.0e-44 181.8 317 42.0
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 5.8e-43 179.1 355 47.6
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 7.6e-43 178.7 114 82.5
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 1.3e-42 177.9 350 48.0
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 1.3e-42 177.9 359 41.5
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 2.2e-42 177.2 355 44.5
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 3.8e-42 176.4 349 39.8
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 4.9e-42 176.0 346 45.4
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 1.9e-41 174.1 359 44.0
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 1.6e-40 171.0 342 37.7
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 3.5e-40 169.9 354 37.0
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 2.3e-39 167.2 311 44.7
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 4.3e-38 162.9 169 55.0
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 1.3e-37 161.4 341 39.3
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 1.3e-37 161.4 322 46.6
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 1.6e-37 161.0 335 35.5
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 2.2e-34 150.6 333 38.1
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 1.4e-33 147.9 263 40.3
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 1.2e-32 144.8 303 47.2
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 2.7e-32 143.7 244 45.9
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 4.6e-32 142.9 360 32.8
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 6.1e-32 142.5 319 45.1
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 1.3e-31 141.4 354 36.2
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 1.8e-31 141.0 378 34.9
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 2.2e-29 134.0 205 44.9
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 2.8e-29 133.7 343 33.8
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 3.7e-29 133.3 356 45.8
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 1.1e-28 131.7 407 30.7
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 1.4e-28 131.3 422 34.4
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 4.1e-28 129.8 159 47.2
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 2.0e-27 127.5 338 37.3
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 8.5e-26 122.1 366 30.9
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 4.6e-24 116.3 350 46.0
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 1.0e-23 115.2 257 34.6
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 2.0e-22 110.9 325 34.5
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 3.7e-21 106.7 169 42.0
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 8.5e-18 95.5 364 47.0
BcaB03g11901 Brassica carinata HOM05D003923 ORTHO05D004553 1.3e-13 81.6 103 48.5
C08p21440 Brassica napus HOM05D003923 ORTHO05D004553 2.6e-11 73.9 51 64.7
BolC8t49783H Brassica oleracea HOM05D003923 ORTHO05D004553 2.6e-11 73.9 51 64.7
BcaC07g38451 Brassica carinata HOM05D003923 ORTHO05D004553 1.0e-10 72.0 53 69.8
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 1.5e-09 68.2 208 32.2
unitig_578.g16204 Utricularia gibba HOM05D003923 ORTHO05D004553 5.5e-09 66.2 223 28.7
ATR0153G027 Amborella trichopoda HOM05D003923 ORTHO05D004553 1.2e-08 65.1 154 39.6
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 4.0e-07 60.1 113 38.9
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 5.2e-07 59.7 173 34.1
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 5.2e-07 59.7 131 33.6
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 5.7e-06 56.2 110 35.5
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 9.7e-06 55.5 110 36.4
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 9.7e-06 55.5 110 36.4
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 9.7e-06 55.5 112 39.3
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 9.7e-06 55.5 112 39.3


User provided reference genes

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