Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR071070 Cardamine hirsuta HOM05D006879 ORTHO05D008452 6.6e-60 233.8 115 100.0
AT1G77540 Arabidopsis thaliana HOM05D006879 ORTHO05D008452 6.2e-50 200.7 115 84.3
Sp5g32720 Schrenkiella parvula HOM05D006879 ORTHO05D008452 1.8e-49 199.1 115 84.3
Thhalv10019334m.g Eutrema salsugineum HOM05D006879 ORTHO05D008452 3.1e-49 198.4 115 87.0
AL2G37750 Arabidopsis lyrata HOM05D006879 ORTHO05D008452 4.0e-49 198.0 115 84.3
BcaB02g07111 Brassica carinata HOM05D006879 ORTHO05D008452 3.4e-48 194.9 112 85.7
C06p31190 Brassica napus HOM05D006879 ORTHO05D008452 9.9e-48 193.4 112 85.7
BcaC08g45472 Brassica carinata HOM05D006879 ORTHO05D008452 1.3e-47 193.0 112 84.8
BolC6t38260H Brassica oleracea HOM05D006879 ORTHO05D008452 1.3e-47 193.0 112 84.8
BraA07t30441Z Brassica rapa HOM05D006879 ORTHO05D008452 2.2e-47 192.2 112 84.8
A07p27940 Brassica napus HOM05D006879 ORTHO05D008452 6.4e-47 190.7 112 83.9
Carub.0002s2444 Capsella rubella HOM05D006879 ORTHO05D008452 4.3e-43 177.9 101 85.1
Aa31LG7G5750 Aethionema arabicum HOM05D006879 ORTHO05D008452 1.8e-41 172.6 107 80.4
Aa31LG4G7630 Aethionema arabicum HOM05D006879 ORTHO05D008452 1.5e-40 169.5 115 71.3
Sp1g19330 Schrenkiella parvula HOM05D006879 ORTHO05D008452 5.8e-40 167.5 106 78.3
BcaC05g26099 Brassica carinata HOM05D006879 ORTHO05D008452 1.3e-39 166.4 102 80.4
Carub.0001s2123 Capsella rubella HOM05D006879 ORTHO05D008452 1.3e-39 166.4 107 76.6
Thhalv10009164m.g Eutrema salsugineum HOM05D006879 ORTHO05D008452 1.7e-39 166.0 106 78.3
PGR083G2398 Punica granatum HOM05D006879 ORTHO05D008452 8.4e-39 163.7 115 67.8
AL1G34970 Arabidopsis lyrata HOM05D006879 ORTHO05D008452 3.2e-38 161.8 109 73.4
AT1G21770 Arabidopsis thaliana HOM05D006879 ORTHO05D008452 3.2e-38 161.8 108 74.1
BolC5t30777H Brassica oleracea HOM05D006879 ORTHO05D008452 5.5e-38 161.0 102 78.4
THA.LOC104813659 Tarenaya hassleriana HOM05D006879 ORTHO05D008452 5.5e-38 161.0 101 76.2
BcaB07g32176 Brassica carinata HOM05D006879 ORTHO05D008452 1.2e-37 159.8 102 77.5
A06p17880 Brassica napus HOM05D006879 ORTHO05D008452 1.2e-37 159.8 102 78.4
BraA06t24878Z Brassica rapa HOM05D006879 ORTHO05D008452 1.2e-37 159.8 102 78.4
MD15G1347100 Malus domestica HOM05D006879 ORTHO05D008452 1.6e-37 159.5 118 68.6
Potri.005G178501 Populus trichocarpa HOM05D006879 ORTHO05D008452 1.6e-37 159.5 111 69.4
Manes.02G164300 Manihot esculenta HOM05D006879 ORTHO05D008452 2.7e-37 158.7 108 70.4
C05p20780 Brassica napus HOM05D006879 ORTHO05D008452 4.6e-37 157.9 102 78.4
QL09p034330 Quercus lobata HOM05D006879 ORTHO05D008452 4.6e-37 157.9 114 65.8
QL09p034374 Quercus lobata HOM05D006879 ORTHO05D008452 4.6e-37 157.9 114 65.8
Cfa016025 Carpinus fangiana HOM05D006879 ORTHO05D008452 1.8e-36 156.0 113 66.4
Ciclev10002899m.g Citrus clementina HOM05D006879 ORTHO05D008452 1.8e-36 156.0 105 69.5
CSS0011792 Camellia sinensis var. sinensis HOM05D006879 ORTHO05D008452 2.3e-36 155.6 110 66.4
Haze_00431 Corylus avellana HOM05D000586 ORTHO05D008452 6.7e-36 154.1 101 72.3
Prupe.1G494800 Prunus persica HOM05D006879 ORTHO05D008452 6.7e-36 154.1 112 68.8
Duzib041G0788 Durio zibethinus HOM05D006879 ORTHO05D008452 1.1e-35 153.3 111 64.0
Atru.chr13.1490 Acer truncatum HOM05D006879 ORTHO05D008452 1.5e-35 152.9 111 68.5
FAN20G0093 Fragaria x ananassa HOM05D006879 ORTHO05D008452 1.9e-35 152.5 110 67.3
Dinv07211 Davidia involucrata HOM05D006879 ORTHO05D008452 4.3e-35 151.4 102 68.6
RcHm_v2.0_Chr6g0295961 Rosa chinensis HOM05D006879 ORTHO05D008452 4.3e-35 151.4 111 67.6
Gorai.002G222300 Gossypium raimondii HOM05D006879 ORTHO05D008452 5.6e-35 151.0 111 64.0
TWI32G0821 Tripterygium wilfordii HOM05D006879 ORTHO05D008452 5.6e-35 151.0 96 74.0
Aqoxy6G00233 Aquilegia oxysepala HOM05D006879 ORTHO05D008452 7.4e-35 150.6 111 64.0
Gohir.D01G180300 Gossypium hirsutum HOM05D006879 ORTHO05D008452 7.4e-35 150.6 111 64.0
HanXRQChr03g0088981 Helianthus annuus HOM05D006879 ORTHO05D008452 7.4e-35 150.6 110 65.5
Nn5g28321 Nelumbo nucifera HOM05D006879 ORTHO05D008452 7.4e-35 150.6 103 67.0
Thecc.08G126700 Theobroma cacao HOM05D006879 ORTHO05D008452 9.6e-35 150.2 101 67.3
FvH4_2g27080 Fragaria vesca HOM05D006879 ORTHO05D008452 1.6e-34 149.4 110 66.4
Gohir.A01G189200 Gossypium hirsutum HOM05D006879 ORTHO05D008452 2.1e-34 149.1 110 62.7
Cc10_g12010 Coffea canephora HOM05D006879 ORTHO05D008452 2.8e-34 148.7 111 65.8
Solyc08g067800.3 Solanum lycopersicum HOM05D006879 ORTHO05D008452 2.8e-34 148.7 103 66.0
CiPaw.06G031600 Carya illinoinensis HOM05D006879 ORTHO05D008452 4.8e-34 147.9 112 61.6
Eucgr.F03793 Eucalyptus grandis HOM05D006879 ORTHO05D008452 4.8e-34 147.9 109 64.2
Sopen08g021740 Solanum pennellii HOM05D006879 ORTHO05D008452 4.8e-34 147.9 103 65.0
FAN24G0949 Fragaria x ananassa HOM05D006879 ORTHO05D008452 6.2e-34 147.5 110 65.5
Sc02g0005010 Simmondsia chinensis HOM05D006879 ORTHO05D008452 8.1e-34 147.1 101 66.3
Phvul.008G160300 Phaseolus vulgaris HOM05D006879 ORTHO05D008452 1.1e-33 146.7 97 72.2
MELO3C010476.2 Cucumis melo HOM05D006879 ORTHO05D008452 1.4e-33 146.4 113 59.3
Hund17297 Selenicereus undatus HOM05D006879 ORTHO05D008452 1.4e-33 146.4 103 66.0
CsaV3_4G028290 Cucumis sativus L. HOM05D006879 ORTHO05D008452 1.8e-33 146.0 113 59.3
COL.COLO4_03398 Corchorus olitorius HOM05D006879 ORTHO05D008452 2.4e-33 145.6 115 62.6
Lsat_1_v5_gn_6_93360 Lactuca sativa HOM05D006879 ORTHO05D008452 2.4e-33 145.6 98 67.3
Sed0023358 Sechium edule HOM05D006879 ORTHO05D008452 2.4e-33 145.6 101 64.4
Hma1.2p1_0054F.1_g031040 Hydrangea macrophylla HOM05D006879 ORTHO05D008452 4.0e-33 144.8 111 61.3
Lj1g0005641 Lotus japonicus HOM05D006879 ORTHO05D008452 4.0e-33 144.8 112 63.4
CAN.G21.5 Capsicum annuum HOM05D006879 ORTHO05D008452 5.3e-33 144.4 106 65.1
arahy.Tifrunner.gnm1.ann1.0SZ2NS Arachis hypogaea HOM05D006879 ORTHO05D008452 6.9e-33 144.1 89 71.9
arahy.Tifrunner.gnm1.ann1.61DA9N Arachis hypogaea HOM05D006879 ORTHO05D008452 6.9e-33 144.1 89 71.9
arahy.Tifrunner.gnm1.ann1.GV74HV Arachis hypogaea HOM05D006879 ORTHO05D008452 6.9e-33 144.1 89 71.9
VMungo0647G0471 Vigna mungo HOM05D006879 ORTHO05D008452 6.9e-33 144.1 97 72.2
CDE07G0981 Ceratophyllum demersum HOM05D006879 ORTHO05D008452 9.0e-33 143.7 102 65.7
Dinv27305 Davidia involucrata HOM05D006879 ORTHO05D008452 9.0e-33 143.7 111 61.3
AUR62019072 Chenopodium quinoa HOM05D006879 ORTHO05D008452 1.2e-32 143.3 109 63.3
Actinidia03466 Actinidia chinensis HOM05D006879 ORTHO05D008452 1.5e-32 142.9 101 68.3
EL10Ac1g01022 Beta vulgaris HOM05D006879 ORTHO05D008452 2.0e-32 142.5 107 63.6
Nitab4.5_0005583g0080 Nicotiana tabacum HOM05D006879 ORTHO05D008452 2.0e-32 142.5 101 68.3
ATR0584G146 Amborella trichopoda HOM05D006879 ORTHO05D008452 2.6e-32 142.1 96 67.7
ECA240G3722 Erigeron canadensis HOM05D006879 ORTHO05D008452 2.6e-32 142.1 110 60.9
MSTRG.25382 Avicennia marina HOM05D006879 ORTHO05D008452 3.4e-32 141.7 105 65.7
AUR62014329 Chenopodium quinoa HOM05D006879 ORTHO05D008452 4.5e-32 141.4 116 61.2
Glyma.14G151700 Glycine max HOM05D006879 ORTHO05D008452 4.5e-32 141.4 116 60.3
ClCG11G015720 Citrullus lanatus HOM05D006879 ORTHO05D008452 5.8e-32 141.0 113 57.5
TAR628G0734 Trochodendron aralioides HOM05D006879 ORTHO05D008452 1.0e-31 140.2 91 69.2
Medtr3g088570 Medicago truncatula HOM05D006879 ORTHO05D008452 2.2e-31 139.0 99 64.6
Psat5g086200 Pisum sativum HOM05D006879 ORTHO05D008452 2.2e-31 139.0 102 66.7
PSO528G0112 Papaver somniferum HOM05D006879 ORTHO05D008452 2.9e-31 138.7 115 57.4
Nitab4.5_0004334g0040 Nicotiana tabacum HOM05D006879 ORTHO05D008452 3.8e-31 138.3 101 65.3
Lalb_Chr11g0066061 Lupinus albus HOM05D006879 ORTHO05D008452 6.5e-31 137.5 105 62.9
CANSAT56G2034 Cannabis sativa HOM05D006879 ORTHO05D008452 5.5e-30 134.4 113 59.3
Ca_28182_v3 Cicer arietinum L. HOM05D006879 ORTHO05D008452 5.5e-30 134.4 90 67.8
PSO170G0506 Papaver somniferum HOM05D006879 ORTHO05D008452 1.2e-29 133.3 115 56.5
Migut.C01128 Erythranthe guttata HOM05D006879 ORTHO05D008452 3.5e-29 131.7 101 60.4
FAN15G3590 Fragaria x ananassa HOM05D006879 ORTHO05D008452 1.8e-28 129.4 145 50.3
SGA_v2.0_scaffold52G18964 Striga asiatica HOM05D006879 ORTHO05D008452 5.7e-27 124.4 109 56.9
vmacro00838 Vaccinium macrocarpon HOM05D006879 ORTHO05D008452 3.7e-26 121.7 86 67.4
RhsimUnG0092300 Rhododendron simsii HOM05D000586 ORTHO05D008452 1.1e-25 120.2 78 73.1
CAN.G21.4 Capsicum annuum HOM05D006879 ORTHO05D008452 1.8e-25 119.4 106 50.9
Cpa.g.sc418.6 Carica papaya HOM05D006879 ORTHO05D008452 2.4e-25 119.0 82 67.1
TPR.G20905 Trifolium pratense HOM05D006879 ORTHO05D008452 4.5e-24 114.8 75 70.7
Zm00001eb082730 Zea mays HOM05D006879 ORTHO05D008452 2.9e-23 112.1 113 52.2
Oeu059437.1 Olea europaea HOM05D006879 ORTHO05D008452 1.1e-22 110.2 68 73.5
Pp3c12_9490 Physcomitrium patens HOM05D006879 ORTHO05D008452 3.2e-22 108.6 110 52.7
GSVIVG01008857001 Vitis vinifera HOM05D006879 ORTHO05D008452 3.2e-22 108.6 68 76.5
Ah.05g171050 Amaranthus hybridus HOM05D006879 ORTHO05D008452 1.2e-21 106.7 101 55.4
SMO146G0286 Selaginella moellendorffii HOM05D006879 ORTHO05D008452 4.3e-19 98.2 89 50.6
HanXRQChr01g0005251 Helianthus annuus HOM05D006879 ORTHO05D008452 1.3e-18 96.7 71 62.0
HanXRQChr04g0101301 Helianthus annuus HOM05D006879 ORTHO05D008452 1.6e-18 96.3 71 64.8
Peaxi162Scf00332g00015 Petunia axillaris HOM05D006879 ORTHO05D008452 8.2e-18 94.0 75 61.3
SEGI_19819 Sequoiadendron giganteum HOM05D006879 ORTHO05D008452 3.1e-17 92.0 85 52.9
Mapoly0075s0062 Marchantia polymorpha HOM05D006879 ORTHO05D008452 1.2e-16 90.1 114 39.5
Os04g0431300 Oryza sativa ssp. japonica HOM05D006879 ORTHO05D008452 5.0e-15 84.7 71 59.2
AagrBONN_evm.TU.Sc2ySwM_117.2168 Anthoceros agrestis HOM05D006879 ORTHO05D008452 1.1e-14 83.6 94 44.7
CBR_g36233 Chara braunii HOM05D006879 ORTHO05D008452 2.5e-11 72.4 59 54.2
Eucgr.H03927 Eucalyptus grandis HOM05D006879 ORTHO05D008452 3.3e-11 72.0 98 44.9
Eucgr.H03925 Eucalyptus grandis HOM05D006879 ORTHO05D008452 4.3e-11 71.6 58 55.2
HanXRQChr09g0244451 Helianthus annuus HOM05D006879 ORTHO05D008452 9.1e-09 63.9 44 65.9
MCO09G076 Micromonas commoda HOM05D006879 ORTHO05D008452 8.5e-07 57.4 67 46.3


User provided reference genes

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