Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR070800 Cardamine hirsuta HOM05D005898 ORTHO05D007493 9.0e-108 393.7 207 100.0
AL2G37490 Arabidopsis lyrata HOM05D005898 ORTHO05D007493 3.5e-96 355.1 206 87.4
C06p51450 Brassica napus HOM05D005898 ORTHO05D007493 6.0e-96 354.4 206 87.4
AT1G77290 Arabidopsis thaliana HOM05D005898 ORTHO05D007493 1.0e-95 353.6 206 86.9
BcaC08g47621 Brassica carinata HOM05D005898 ORTHO05D007493 3.0e-95 352.1 206 86.4
BraA07t31804Z Brassica rapa HOM05D005898 ORTHO05D007493 3.0e-95 352.1 206 86.9
A07p42830 Brassica napus HOM05D005898 ORTHO05D007493 3.9e-95 351.7 206 86.4
BolC6t40163H Brassica oleracea HOM05D005898 ORTHO05D007493 3.9e-95 351.7 206 86.4
Sp5g32460 Schrenkiella parvula HOM05D005898 ORTHO05D007493 3.9e-95 351.7 206 87.4
Thhalv10019613m.g Eutrema salsugineum HOM05D005898 ORTHO05D007493 1.8e-92 342.8 206 86.4
Aa31LG4G7300 Aethionema arabicum HOM05D005898 ORTHO05D007493 7.2e-81 304.3 206 78.6
Carub.0002s2417 Capsella rubella HOM05D005898 ORTHO05D007493 2.0e-78 296.2 174 85.6
THA.LOC104812081 Tarenaya hassleriana HOM05D005898 ORTHO05D007493 7.7e-75 284.3 207 70.5
Cpa.g.sc26.314 Carica papaya HOM05D005898 ORTHO05D007493 1.0e-71 273.9 205 63.4
Haze_17639 Corylus avellana HOM05D005898 ORTHO05D007493 1.4e-71 273.5 207 64.3
Manes.02G168700 Manihot esculenta HOM05D005898 ORTHO05D007493 1.4e-71 273.5 205 63.9
Nitab4.5_0003978g0050 Nicotiana tabacum HOM05D005898 ORTHO05D007493 1.1e-70 270.4 208 65.9
Ciclev10002166m.g Citrus clementina HOM05D005898 ORTHO05D007493 1.5e-70 270.0 207 64.3
QL09p032362 Quercus lobata HOM05D005898 ORTHO05D007493 2.6e-70 269.2 206 63.6
Peaxi162Scf00066g00224 Petunia axillaris HOM05D005898 ORTHO05D007493 4.4e-70 268.5 208 65.9
Glyma.06G117800 Glycine max HOM05D005898 ORTHO05D007493 9.7e-70 267.3 208 62.5
Glyma.13G034200 Glycine max HOM05D005898 ORTHO05D007493 9.7e-70 267.3 207 62.3
VMungo0647G2141 Vigna mungo HOM05D005898 ORTHO05D007493 9.7e-70 267.3 207 63.3
arahy.Tifrunner.gnm1.ann1.74JCE2 Arachis hypogaea HOM05D005898 ORTHO05D007493 4.8e-69 265.0 208 61.5
Nitab4.5_0000317g0210 Nicotiana tabacum HOM05D005898 ORTHO05D007493 6.3e-69 264.6 208 63.9
Phvul.001G068100 Phaseolus vulgaris HOM05D005898 ORTHO05D007493 6.3e-69 264.6 207 61.8
Psat5g084560 Pisum sativum HOM05D005898 ORTHO05D007493 1.1e-68 263.8 208 61.5
Lalb_Chr08g0241041 Lupinus albus HOM05D005898 ORTHO05D007493 1.4e-68 263.5 208 62.5
Medtr3g088635 Medicago truncatula HOM05D005898 ORTHO05D007493 1.4e-68 263.5 208 61.1
arahy.Tifrunner.gnm1.ann1.XM429X Arachis hypogaea HOM05D005898 ORTHO05D007493 1.8e-68 263.1 208 61.5
CiPaw.15G031100 Carya illinoinensis HOM05D005898 ORTHO05D007493 1.8e-68 263.1 206 62.6
Potri.005G182000 Populus trichocarpa HOM05D005898 ORTHO05D007493 1.8e-68 263.1 207 63.8
Sopen04g025740 Solanum pennellii HOM05D005898 ORTHO05D007493 2.4e-68 262.7 208 63.5
VMungo1309G0075 Vigna mungo HOM05D005898 ORTHO05D007493 3.1e-68 262.3 208 60.6
Sabra05G0138000 Salix brachista HOM05D005898 ORTHO05D007493 4.1e-68 261.9 207 62.8
Solyc04g057890.3 Solanum lycopersicum HOM05D005898 ORTHO05D007493 5.3e-68 261.5 208 63.5
PGSC0003DMG400025321 Solanum tuberosum HOM05D005898 ORTHO05D007493 7.0e-68 261.2 208 63.0
TPR.G21851 Trifolium pratense HOM05D005898 ORTHO05D007493 9.1e-68 260.8 208 60.6
Phvul.009G130200 Phaseolus vulgaris HOM05D005898 ORTHO05D007493 1.6e-67 260.0 208 60.6
Hma1.2p1_1121F.1_g259260 Hydrangea macrophylla HOM05D005898 ORTHO05D007493 2.0e-67 259.6 207 62.3
Dinv27268 Davidia involucrata HOM05D005898 ORTHO05D007493 2.6e-67 259.2 207 62.8
PSO528G0126 Papaver somniferum HOM05D005898 ORTHO05D007493 2.6e-67 259.2 207 61.8
PSO170G0207 Papaver somniferum HOM05D005898 ORTHO05D007493 3.5e-67 258.8 207 61.8
RcHm_v2.0_Chr6g0296751 Rosa chinensis HOM05D005898 ORTHO05D007493 4.5e-67 258.5 207 62.8
ClCG11G016010 Citrullus lanatus HOM05D005898 ORTHO05D007493 5.9e-67 258.1 207 60.4
PGR044G1855 Punica granatum HOM05D005898 ORTHO05D007493 5.9e-67 258.1 207 59.4
Lj1g0001609 Lotus japonicus HOM05D005898 ORTHO05D007493 1.7e-66 256.5 208 61.1
Thecc.08G133400 Theobroma cacao HOM05D005898 ORTHO05D007493 2.2e-66 256.1 207 62.3
GSVIVG01008804001 Vitis vinifera HOM05D005898 ORTHO05D007493 2.2e-66 256.1 205 62.9
Ca_16611_v3 Cicer arietinum L. HOM05D005898 ORTHO05D007493 2.9e-66 255.8 208 61.5
TWI34G0248 Tripterygium wilfordii HOM05D005898 ORTHO05D007493 2.9e-66 255.8 207 61.4
Actinidia29492 Actinidia chinensis HOM05D005898 ORTHO05D007493 6.5e-66 254.6 207 59.9
MELO3C010516.2 Cucumis melo HOM05D005898 ORTHO05D007493 6.5e-66 254.6 207 59.4
TAR381G0459 Trochodendron aralioides HOM05D005898 ORTHO05D007493 1.1e-65 253.8 207 60.9
Atru.chr13.1575 Acer truncatum HOM05D005898 ORTHO05D007493 1.5e-65 253.4 208 60.1
CsaV3_4G028000 Cucumis sativus L. HOM05D005898 ORTHO05D007493 1.5e-65 253.4 207 58.0
CSS0002345 Camellia sinensis var. sinensis HOM05D005898 ORTHO05D007493 1.9e-65 253.1 207 61.8
CSS0024013 Camellia sinensis var. sinensis HOM05D005898 ORTHO05D007493 1.9e-65 253.1 199 63.3
CAN.G716.15 Capsicum annuum HOM05D005898 ORTHO05D007493 2.5e-65 252.7 208 60.6
Eucgr.E01005 Eucalyptus grandis HOM05D005898 ORTHO05D007493 2.5e-65 252.7 207 59.9
Duzib041G0058 Durio zibethinus HOM05D005898 ORTHO05D007493 3.2e-65 252.3 207 62.3
FvH4_2g27900 Fragaria vesca HOM05D005898 ORTHO05D007493 3.2e-65 252.3 207 61.4
FAN24G0310 Fragaria x ananassa HOM05D005898 ORTHO05D007493 3.2e-65 252.3 207 61.4
FAN15G2418 Fragaria x ananassa HOM05D005898 ORTHO05D007493 7.2e-65 251.1 207 61.4
FAN15G2964 Fragaria x ananassa HOM05D005898 ORTHO05D007493 7.2e-65 251.1 207 61.4
Oeu026373.1 Olea europaea HOM05D005898 ORTHO05D007493 7.2e-65 251.1 209 60.8
Cc10_g13730 Coffea canephora HOM05D005898 ORTHO05D007493 1.2e-64 250.4 207 60.9
Ah.05g169090 Amaranthus hybridus HOM05D005898 ORTHO05D007493 2.1e-64 249.6 207 59.4
FAN20G2399 Fragaria x ananassa HOM05D005898 ORTHO05D007493 2.1e-64 249.6 207 60.9
Lalb_Chr11g0066191 Lupinus albus HOM05D005898 ORTHO05D007493 2.1e-64 249.6 207 58.5
MSTRG.1410 Avicennia marina HOM05D005898 ORTHO05D007493 2.7e-64 249.2 207 58.5
Prupe.1G489200 Prunus persica HOM05D005898 ORTHO05D007493 2.7e-64 249.2 207 58.0
AUR62007708 Chenopodium quinoa HOM05D005898 ORTHO05D007493 3.6e-64 248.8 207 58.5
MBI06_g35214_MAGBIO Magnolia biondii HOM05D005898 ORTHO05D007493 4.7e-64 248.4 205 60.0
Sed0026006 Sechium edule HOM05D005898 ORTHO05D007493 6.1e-64 248.1 207 58.5
Aqoxy6G00307 Aquilegia oxysepala HOM05D005898 ORTHO05D007493 1.0e-63 247.3 206 58.7
AUR62013433 Chenopodium quinoa HOM05D005898 ORTHO05D007493 1.4e-63 246.9 207 58.5
vmacro20860 Vaccinium macrocarpon HOM05D005898 ORTHO05D007493 3.0e-63 245.7 206 58.7
DCAR_014367 Daucus carota HOM05D005898 ORTHO05D007493 6.7e-63 244.6 207 58.5
Gohir.A02G110700 Gossypium hirsutum HOM05D005898 ORTHO05D007493 6.7e-63 244.6 197 61.4
Gorai.013G108000 Gossypium raimondii HOM05D005898 ORTHO05D007493 1.2e-62 243.8 197 61.4
Eucgr.C00041 Eucalyptus grandis HOM05D005898 ORTHO05D007493 1.5e-62 243.4 207 58.0
Lj4C681T5 Lonicera japonica HOM05D005898 ORTHO05D007493 1.5e-62 243.4 191 62.3
Gohir.D03G069006 Gossypium hirsutum HOM05D005898 ORTHO05D007493 2.6e-62 242.7 197 60.9
EL10Ac1g01360 Beta vulgaris HOM05D005898 ORTHO05D007493 5.7e-62 241.5 207 57.5
Eucgr.B02072 Eucalyptus grandis HOM05D005898 ORTHO05D007493 7.5e-62 241.1 207 58.5
MD15G1133600 Malus domestica HOM05D005898 ORTHO05D007493 1.7e-61 240.0 207 57.5
Sc26g0002800 Simmondsia chinensis HOM05D005898 ORTHO05D007493 8.2e-61 237.7 208 56.7
Eucgr.A01942 Eucalyptus grandis HOM05D005898 ORTHO05D007493 1.1e-60 237.3 215 56.7
Eucgr.J01273 Eucalyptus grandis HOM05D005898 ORTHO05D007493 1.1e-60 237.3 215 56.7
Migut.C01068 Erythranthe guttata HOM05D005898 ORTHO05D007493 1.8e-60 236.5 207 57.0
Eucgr.H02561 Eucalyptus grandis HOM05D005898 ORTHO05D007493 1.6e-59 233.4 224 54.5
Eucgr.H02194 Eucalyptus grandis HOM05D005898 ORTHO05D007493 2.0e-59 233.0 224 54.5
HanXRQChr02g0045111 Helianthus annuus HOM05D005898 ORTHO05D007493 3.5e-59 232.3 207 55.1
ECA236G4352 Erigeron canadensis HOM05D005898 ORTHO05D007493 4.5e-59 231.9 207 54.6
Lsat_1_v5_gn_1_7480 Lactuca sativa HOM05D005898 ORTHO05D007493 6.5e-58 228.0 205 55.1
CSS0035583 Camellia sinensis var. sinensis HOM05D005898 ORTHO05D007493 2.5e-57 226.1 207 56.0
CAN.G531.17 Capsicum annuum HOM05D005898 ORTHO05D007493 4.2e-57 225.3 186 61.3
SGA_v2.0_scaffold52G18918 Striga asiatica HOM05D005898 ORTHO05D007493 7.2e-57 224.6 207 54.6
Glyma.14G155200 Glycine max HOM05D005898 ORTHO05D007493 2.1e-56 223.0 178 62.9
ATR0584G218 Amborella trichopoda HOM05D005898 ORTHO05D007493 3.0e-55 219.2 204 54.4
Nn1g08950 Nelumbo nucifera HOM05D005898 ORTHO05D007493 2.0e-54 216.5 164 62.2
HPP92_005662 Vanilla planifolia HOM05D005898 ORTHO05D007493 3.4e-54 215.7 202 55.9
COL.COLO4_35486 Corchorus olitorius HOM05D005898 ORTHO05D007493 4.8e-53 211.8 175 61.7
Os04g0435500 Oryza sativa ssp. japonica HOM05D005898 ORTHO05D007493 1.1e-52 210.7 198 53.0
Zm00001eb082540 Zea mays HOM05D005898 ORTHO05D007493 7.7e-51 204.5 198 52.0
CANSAT25G1205 Cannabis sativa HOM05D005898 ORTHO05D007493 2.3e-50 203.0 175 57.7
SEGI_40355 Sequoiadendron giganteum HOM05D005898 ORTHO05D007493 1.1e-44 184.1 204 45.1
VMungo0251G2592 Vigna mungo HOM05D005898 ORTHO05D007493 3.5e-43 179.1 142 59.2
Rhsim07G0179900 Rhododendron simsii HOM05D005898 ORTHO05D007493 5.6e-41 171.8 180 51.1
unitig_0.g2114 Utricularia gibba HOM05D005898 ORTHO05D007493 2.1e-40 169.9 137 56.2
Dinv14694 Davidia involucrata HOM05D005898 ORTHO05D007493 1.6e-35 153.7 116 63.8
Pp3c4_7330 Physcomitrium patens HOM05D005898 ORTHO05D007493 1.1e-33 147.5 204 38.2
SMO116G0017 Selaginella moellendorffii HOM05D005898 ORTHO05D007493 9.5e-33 144.4 203 39.9
SEGI_24309 Sequoiadendron giganteum HOM05D005898 ORTHO05D007493 5.2e-31 138.7 178 42.1
Mapoly0029s0068 Marchantia polymorpha HOM05D005898 ORTHO05D007493 6.4e-29 131.7 177 40.7
Lj4C682T8 Lonicera japonica HOM05D005898 ORTHO05D007493 2.1e-24 116.7 93 59.1
BcaB05g25031 Brassica carinata HOM05D001308 ORTHO05D001170 2.6e-22 109.8 78 73.1
Mapoly0004s0061 Marchantia polymorpha HOM05D005898 ORTHO05D048762 7.3e-17 91.7 176 30.1
Pp3c7_4180 Physcomitrium patens HOM05D005898 ORTHO05D007493 3.1e-15 86.3 149 32.2
CAN.G749.9 Capsicum annuum HOM05D005898 ORTHO05D008629 1.2e-14 84.3 77 54.5
Pp3c2_9920 Physcomitrium patens HOM05D005898 ORTHO05D007493 1.5e-14 84.0 148 33.8
Pp3c14_19170 Physcomitrium patens HOM05D005898 ORTHO05D048762 1.3e-13 80.9 178 27.5
Pp3c17_19050 Physcomitrium patens HOM05D005898 ORTHO05D007493 1.2e-11 74.3 154 29.2
Pp3c17_19052 Physcomitrium patens HOM05D005898 ORTHO05D007493 1.2e-11 74.3 154 29.2
RcHm_v2.0_Chr7g0218491 Rosa chinensis HOM05D005898 ORTHO05D007493 2.5e-09 66.6 76 51.3
vmacro04383 Vaccinium macrocarpon HOM05D000498 ORTHO05D000354 6.2e-08 62.0 82 37.8
Psat6g000880 Pisum sativum HOM05D000498 ORTHO05D000354 1.1e-07 61.2 87 35.6
Rhsim07G0251700 Rhododendron simsii HOM05D000498 ORTHO05D000354 1.8e-07 60.5 83 36.1
arahy.Tifrunner.gnm1.ann1.E0932D Arachis hypogaea HOM05D005898 ORTHO05D007493 2.4e-07 60.1 61 49.2
Medtr1g026140 Medicago truncatula HOM05D000498 ORTHO05D000354 2.4e-07 60.1 89 37.1
CSS0008199 Camellia sinensis var. sinensis HOM05D000498 ORTHO05D000354 3.1e-07 59.7 82 35.4
MD08G1006600 Malus domestica HOM05D000498 ORTHO05D000354 3.1e-07 59.7 85 36.5
TPR.G26413 Trifolium pratense HOM05D000498 ORTHO05D000354 4.0e-07 59.3 89 36.0
Peaxi162Scf00591g00718 Petunia axillaris HOM05D005898 ORTHO05D007493 6.9e-07 58.5 68 47.1
Sc15g0003600 Simmondsia chinensis HOM05D000498 ORTHO05D000354 6.9e-07 58.5 84 32.1
TAR112G0002 Trochodendron aralioides HOM05D000498 ORTHO05D000354 6.9e-07 58.5 82 34.1
Manes.02G089200 Manihot esculenta HOM05D000498 ORTHO05D000354 1.2e-06 57.8 81 35.8
unitig_32.g10731 Utricularia gibba HOM05D000498 ORTHO05D000354 1.5e-06 57.4 100 35.0
Hma1.2p1_2322F.1_g319890 Hydrangea macrophylla HOM05D000498 ORTHO05D000354 2.0e-06 57.0 85 35.3
Hma1.2p1_2849F.1_g329375 Hydrangea macrophylla HOM05D000498 ORTHO05D000354 2.0e-06 57.0 85 35.3
EL10Ac1g02059 Beta vulgaris HOM05D000498 ORTHO05D000354 2.6e-06 56.6 82 35.4
Haze_22725 Corylus avellana HOM05D000498 ORTHO05D000354 2.6e-06 56.6 83 33.7
Lsat_1_v5_gn_9_46740 Lactuca sativa HOM05D000498 ORTHO05D000354 2.6e-06 56.6 82 32.9
GSVIVG01008725001 Vitis vinifera HOM05D000498 ORTHO05D000354 2.6e-06 56.6 85 34.1
Solyc12g094430.1 Solanum lycopersicum HOM05D000498 ORTHO05D000354 3.4e-06 56.2 85 35.3
CDE09G1124 Ceratophyllum demersum HOM05D000498 ORTHO05D000354 4.4e-06 55.8 82 32.9
Dinv31904 Davidia involucrata HOM05D000498 ORTHO05D000354 4.4e-06 55.8 82 34.1
Migut.K00978 Erythranthe guttata HOM05D000498 ORTHO05D000354 4.4e-06 55.8 127 29.1
Manes.02G089100 Manihot esculenta HOM05D000498 ORTHO05D000354 4.4e-06 55.8 81 34.6
Manes.18G008600 Manihot esculenta HOM05D000498 ORTHO05D000354 4.4e-06 55.8 82 32.9
Hund05146 Selenicereus undatus HOM05D000498 ORTHO05D000354 4.4e-06 55.8 82 32.9
Sopen12g031310 Solanum pennellii HOM05D000498 ORTHO05D000354 4.4e-06 55.8 85 35.3
TAR625G0594 Trochodendron aralioides HOM05D000498 ORTHO05D000354 5.8e-06 55.5 82 32.9
Eucgr.K01233 Eucalyptus grandis HOM05D000498 ORTHO05D000354 7.6e-06 55.1 81 37.0
Aqoxy6G01909 Aquilegia oxysepala HOM05D000498 ORTHO05D000354 9.9e-06 54.7 85 35.3
Ciclev10002119m.g Citrus clementina HOM05D000498 ORTHO05D000354 9.9e-06 54.7 82 31.7
HanXRQChr05g0145711 Helianthus annuus HOM05D000498 ORTHO05D000354 9.9e-06 54.7 85 34.1
Nitab4.5_0002353g0040 Nicotiana tabacum HOM05D000498 ORTHO05D000354 9.9e-06 54.7 82 32.9


User provided reference genes

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