Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR070790 Cardamine hirsuta HOM05D005898 ORTHO05D007493 1.2e-39 166.0 80 100.0
Thhalv10019613m.g Eutrema salsugineum HOM05D005898 ORTHO05D007493 3.9e-35 151.0 72 98.6
Sp5g32460 Schrenkiella parvula HOM05D005898 ORTHO05D007493 3.9e-35 151.0 72 98.6
THA.LOC104812081 Tarenaya hassleriana HOM05D005898 ORTHO05D007493 6.7e-35 150.2 77 90.9
A07p42830 Brassica napus HOM05D005898 ORTHO05D007493 8.7e-35 149.8 72 97.2
BraA07t31804Z Brassica rapa HOM05D005898 ORTHO05D007493 8.7e-35 149.8 72 97.2
BcaC08g47621 Brassica carinata HOM05D005898 ORTHO05D007493 1.9e-34 148.7 72 95.8
C06p51450 Brassica napus HOM05D005898 ORTHO05D007493 1.9e-34 148.7 72 95.8
BolC6t40163H Brassica oleracea HOM05D005898 ORTHO05D007493 1.9e-34 148.7 72 95.8
AL2G37490 Arabidopsis lyrata HOM05D005898 ORTHO05D007493 3.3e-34 147.9 72 95.8
Carub.0002s2417 Capsella rubella HOM05D005898 ORTHO05D007493 3.3e-34 147.9 72 95.8
AT1G77290 Arabidopsis thaliana HOM05D005898 ORTHO05D007493 5.7e-34 147.1 72 94.4
Aa31LG4G7300 Aethionema arabicum HOM05D005898 ORTHO05D007493 7.4e-34 146.7 72 94.4
Cpa.g.sc26.314 Carica papaya HOM05D005898 ORTHO05D007493 1.4e-32 142.5 77 87.0
CiPaw.15G031100 Carya illinoinensis HOM05D005898 ORTHO05D007493 5.3e-32 140.6 77 84.4
TWI34G0248 Tripterygium wilfordii HOM05D005898 ORTHO05D007493 1.5e-31 139.0 77 84.4
TAR381G0459 Trochodendron aralioides HOM05D005898 ORTHO05D007493 1.5e-31 139.0 77 81.8
Haze_17639 Corylus avellana HOM05D005898 ORTHO05D007493 2.0e-31 138.7 77 81.8
CSS0035583 Camellia sinensis var. sinensis HOM05D005898 ORTHO05D007493 4.5e-31 137.5 77 83.1
CANSAT25G1205 Cannabis sativa HOM05D005898 ORTHO05D007493 4.5e-31 137.5 72 87.5
Hma1.2p1_1121F.1_g259260 Hydrangea macrophylla HOM05D005898 ORTHO05D007493 4.5e-31 137.5 77 81.8
QL09p032362 Quercus lobata HOM05D005898 ORTHO05D007493 4.5e-31 137.5 72 86.1
ClCG11G016010 Citrullus lanatus HOM05D005898 ORTHO05D007493 1.7e-30 135.6 77 79.2
Ciclev10002166m.g Citrus clementina HOM05D005898 ORTHO05D007493 3.8e-30 134.4 77 80.5
Dinv27268 Davidia involucrata HOM05D005898 ORTHO05D007493 3.8e-30 134.4 72 83.3
ECA236G4352 Erigeron canadensis HOM05D005898 ORTHO05D007493 3.8e-30 134.4 72 81.9
Aqoxy6G00307 Aquilegia oxysepala HOM05D005898 ORTHO05D007493 6.5e-30 133.7 72 83.3
CsaV3_4G028000 Cucumis sativus L. HOM05D005898 ORTHO05D007493 6.5e-30 133.7 77 79.2
PSO170G0207 Papaver somniferum HOM05D005898 ORTHO05D007493 6.5e-30 133.7 76 77.6
PSO528G0126 Papaver somniferum HOM05D005898 ORTHO05D007493 6.5e-30 133.7 76 77.6
Sed0026006 Sechium edule HOM05D005898 ORTHO05D007493 6.5e-30 133.7 77 77.9
MELO3C010516.2 Cucumis melo HOM05D005898 ORTHO05D007493 8.5e-30 133.3 77 77.9
Duzib041G0058 Durio zibethinus HOM05D005898 ORTHO05D007493 8.5e-30 133.3 77 80.5
Eucgr.H02194 Eucalyptus grandis HOM05D005898 ORTHO05D007493 8.5e-30 133.3 77 77.9
Eucgr.E01005 Eucalyptus grandis HOM05D005898 ORTHO05D007493 1.1e-29 132.9 77 77.9
Eucgr.H02561 Eucalyptus grandis HOM05D005898 ORTHO05D007493 1.1e-29 132.9 77 77.9
Manes.02G168700 Manihot esculenta HOM05D005898 ORTHO05D007493 1.1e-29 132.9 77 77.9
DCAR_014367 Daucus carota HOM05D005898 ORTHO05D007493 1.4e-29 132.5 72 83.3
Potri.005G182000 Populus trichocarpa HOM05D005898 ORTHO05D007493 1.9e-29 132.1 77 79.2
Prupe.1G489200 Prunus persica HOM05D005898 ORTHO05D007493 1.9e-29 132.1 72 81.9
Thecc.08G133400 Theobroma cacao HOM05D005898 ORTHO05D007493 1.9e-29 132.1 77 80.5
Atru.chr13.1575 Acer truncatum HOM05D005898 ORTHO05D007493 2.5e-29 131.7 72 83.3
CSS0002345 Camellia sinensis var. sinensis HOM05D005898 ORTHO05D007493 3.2e-29 131.3 77 76.6
Lsat_1_v5_gn_1_7480 Lactuca sativa HOM05D005898 ORTHO05D007493 4.2e-29 131.0 72 79.2
PGR044G1855 Punica granatum HOM05D005898 ORTHO05D007493 4.2e-29 131.0 72 81.9
MD15G1133600 Malus domestica HOM05D005898 ORTHO05D007493 7.2e-29 130.2 72 83.3
EL10Ac1g01360 Beta vulgaris HOM05D005898 ORTHO05D007493 1.2e-28 129.4 72 79.2
CAN.G716.15 Capsicum annuum HOM05D005898 ORTHO05D007493 1.6e-28 129.0 72 79.2
Cc10_g13730 Coffea canephora HOM05D005898 ORTHO05D007493 1.6e-28 129.0 72 79.2
Migut.C01068 Erythranthe guttata HOM05D005898 ORTHO05D007493 1.6e-28 129.0 72 80.6
Nn5g28442 Nelumbo nucifera HOM05D005898 ORTHO05D007493 1.6e-28 129.0 74 79.7
Rhsim07G0179900 Rhododendron simsii HOM05D005898 ORTHO05D007493 1.6e-28 129.0 77 74.0
GSVIVG01008804001 Vitis vinifera HOM05D005898 ORTHO05D007493 1.6e-28 129.0 77 75.3
CSS0024013 Camellia sinensis var. sinensis HOM05D005898 ORTHO05D007493 2.1e-28 128.6 77 75.3
Peaxi162Scf00066g00224 Petunia axillaris HOM05D005898 ORTHO05D007493 2.1e-28 128.6 72 77.8
Actinidia29492 Actinidia chinensis HOM05D005898 ORTHO05D007493 2.7e-28 128.3 72 81.9
HanXRQChr02g0045111 Helianthus annuus HOM05D005898 ORTHO05D007493 2.7e-28 128.3 72 76.4
MSTRG.1410 Avicennia marina HOM05D005898 ORTHO05D007493 3.6e-28 127.9 72 80.6
FvH4_2g27900 Fragaria vesca HOM05D005898 ORTHO05D007493 3.6e-28 127.9 72 79.2
FAN20G2399 Fragaria x ananassa HOM05D005898 ORTHO05D007493 3.6e-28 127.9 72 79.2
FAN24G0310 Fragaria x ananassa HOM05D005898 ORTHO05D007493 3.6e-28 127.9 72 79.2
Lj1g0001609 Lotus japonicus HOM05D005898 ORTHO05D007493 3.6e-28 127.9 72 76.4
Sabra05G0138000 Salix brachista HOM05D005898 ORTHO05D007493 3.6e-28 127.9 77 75.3
Ah.05g169090 Amaranthus hybridus HOM05D005898 ORTHO05D007493 4.6e-28 127.5 72 76.4
Eucgr.C00041 Eucalyptus grandis HOM05D005898 ORTHO05D007493 4.6e-28 127.5 77 75.3
Gohir.A02G110700 Gossypium hirsutum HOM05D005898 ORTHO05D007493 4.6e-28 127.5 77 77.9
Gorai.013G108000 Gossypium raimondii HOM05D005898 ORTHO05D007493 4.6e-28 127.5 77 77.9
Lalb_Chr11g0066191 Lupinus albus HOM05D005898 ORTHO05D007493 4.6e-28 127.5 72 77.8
RcHm_v2.0_Chr6g0296751 Rosa chinensis HOM05D005898 ORTHO05D007493 4.6e-28 127.5 72 79.2
Zm00001eb082540 Zea mays HOM05D005898 ORTHO05D007493 4.6e-28 127.5 78 71.8
Nitab4.5_0000317g0210 Nicotiana tabacum HOM05D005898 ORTHO05D007493 6.1e-28 127.1 72 77.8
Nitab4.5_0003978g0050 Nicotiana tabacum HOM05D005898 ORTHO05D007493 6.1e-28 127.1 72 77.8
CAN.G531.17 Capsicum annuum HOM05D005898 ORTHO05D007493 7.9e-28 126.7 72 77.8
Solyc04g057890.3 Solanum lycopersicum HOM05D005898 ORTHO05D007493 7.9e-28 126.7 72 77.8
Sopen04g025740 Solanum pennellii HOM05D005898 ORTHO05D007493 7.9e-28 126.7 72 77.8
PGSC0003DMG400025321 Solanum tuberosum HOM05D005898 ORTHO05D007493 7.9e-28 126.7 72 77.8
MBI06_g35214_MAGBIO Magnolia biondii HOM05D005898 ORTHO05D007493 1.4e-27 125.9 70 78.6
Sc26g0002800 Simmondsia chinensis HOM05D005898 ORTHO05D007493 1.8e-27 125.6 72 76.4
TPR.G21851 Trifolium pratense HOM05D005898 ORTHO05D007493 1.8e-27 125.6 77 72.7
arahy.Tifrunner.gnm1.ann1.E0932D Arachis hypogaea HOM05D005898 ORTHO05D007493 2.3e-27 125.2 77 71.4
arahy.Tifrunner.gnm1.ann1.XM429X Arachis hypogaea HOM05D005898 ORTHO05D007493 2.3e-27 125.2 77 71.4
Os04g0435500 Oryza sativa ssp. japonica HOM05D005898 ORTHO05D007493 2.3e-27 125.2 78 70.5
AUR62007708 Chenopodium quinoa HOM05D005898 ORTHO05D007493 3.0e-27 124.8 72 75.0
Glyma.06G117800 Glycine max HOM05D005898 ORTHO05D007493 3.0e-27 124.8 77 71.4
Gohir.D03G069006 Gossypium hirsutum HOM05D005898 ORTHO05D007493 3.0e-27 124.8 77 76.6
Oeu026373.1 Olea europaea HOM05D005898 ORTHO05D007493 3.0e-27 124.8 72 77.8
FAN15G2418 Fragaria x ananassa HOM05D005898 ORTHO05D007493 3.9e-27 124.4 70 78.6
FAN15G2964 Fragaria x ananassa HOM05D005898 ORTHO05D007493 3.9e-27 124.4 70 78.6
VMungo1309G0075 Vigna mungo HOM05D005898 ORTHO05D007493 3.9e-27 124.4 77 70.1
Ca_16611_v3 Cicer arietinum L. HOM05D005898 ORTHO05D007493 5.1e-27 124.0 77 72.7
arahy.Tifrunner.gnm1.ann1.74JCE2 Arachis hypogaea HOM05D005898 ORTHO05D007493 6.7e-27 123.6 77 70.1
Medtr3g088635 Medicago truncatula HOM05D005898 ORTHO05D007493 8.8e-27 123.2 77 70.1
SGA_v2.0_scaffold52G18918 Striga asiatica HOM05D005898 ORTHO05D007493 8.8e-27 123.2 72 77.8
Lalb_Chr08g0241041 Lupinus albus HOM05D005898 ORTHO05D007493 1.1e-26 122.9 72 76.4
Psat5g084560 Pisum sativum HOM05D005898 ORTHO05D007493 2.0e-26 122.1 77 68.8
AUR62013433 Chenopodium quinoa HOM05D005898 ORTHO05D007493 3.3e-26 121.3 71 73.2
Phvul.009G130200 Phaseolus vulgaris HOM05D005898 ORTHO05D007493 3.3e-26 121.3 77 68.8
Glyma.13G034200 Glycine max HOM05D005898 ORTHO05D007493 5.7e-26 120.6 77 68.8
Phvul.001G068100 Phaseolus vulgaris HOM05D005898 ORTHO05D007493 9.7e-26 119.8 77 67.5
VMungo0647G2141 Vigna mungo HOM05D005898 ORTHO05D007493 9.7e-26 119.8 77 67.5
ATR0584G218 Amborella trichopoda HOM05D005898 ORTHO05D007493 1.7e-25 119.0 76 67.1
Glyma.14G155200 Glycine max HOM05D005898 ORTHO05D007493 6.3e-25 117.1 77 66.2
MD08G1159700 Malus domestica HOM05D005898 ORTHO05D007493 9.1e-24 113.2 72 75.0
vmacro20860 Vaccinium macrocarpon HOM05D005898 ORTHO05D007493 5.0e-22 107.5 68 70.6
SEGI_40355 Sequoiadendron giganteum HOM05D005898 ORTHO05D007493 1.4e-21 105.9 72 61.1
SEGI_14681 Sequoiadendron giganteum HOM05D005898 ORTHO05D007493 1.9e-21 105.5 73 64.4
Peaxi162Scf00591g00717 Petunia axillaris HOM05D005898 ORTHO05D007493 1.8e-19 99.0 70 65.7
Pp3c4_7330 Physcomitrium patens HOM05D005898 ORTHO05D007493 2.6e-18 95.1 72 51.4
SMO116G0017 Selaginella moellendorffii HOM05D005898 ORTHO05D007493 4.1e-16 87.8 72 47.2
Mapoly0029s0068 Marchantia polymorpha HOM05D005898 ORTHO05D007493 2.0e-15 85.5 72 50.0
COL.COLO4_35486 Corchorus olitorius HOM05D005898 ORTHO05D007493 1.4e-08 62.8 39 76.9
HPP92_005662 Vanilla planifolia HOM05D005898 ORTHO05D007493 1.3e-06 56.2 44 54.5
Carub.0001s0205 Capsella rubella HOM05D000498 ORTHO05D000354 1.7e-06 55.8 79 29.1
DCAR_029456 Daucus carota HOM05D002233 ORTHO05D002299 1.7e-06 55.8 74 36.5
Sp1g01940 Schrenkiella parvula HOM05D000498 ORTHO05D000354 1.7e-06 55.8 71 35.2
BcaC07g36982 Brassica carinata HOM05D000498 ORTHO05D000354 2.2e-06 55.5 79 30.4
THA.LOC104801262 Tarenaya hassleriana HOM05D000498 ORTHO05D000354 2.9e-06 55.1 69 33.3
Carub.0001s3417 Capsella rubella HOM05D000498 ORTHO05D000354 3.8e-06 54.7 79 29.1
Haze_09949 Corylus avellana HOM05D002233 ORTHO05D002299 3.8e-06 54.7 74 35.1
Potri.004G232600 Populus trichocarpa HOM05D002233 ORTHO05D002299 3.8e-06 54.7 74 35.1
AT1G02940 Arabidopsis thaliana HOM05D000498 ORTHO05D000354 5.0e-06 54.3 71 36.6
unitig_8.g3612 Utricularia gibba HOM05D002233 ORTHO05D002299 5.0e-06 54.3 74 36.5
ECA240G2358 Erigeron canadensis HOM05D002233 ORTHO05D002299 8.5e-06 53.5 74 36.5
Sabra01G0178100 Salix brachista HOM05D002233 ORTHO05D002299 8.5e-06 53.5 74 35.1


User provided reference genes

Program Settings