Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 2.1e-92 342.8 235 100.0
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 1.2e-68 263.8 241 77.6
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 1.0e-67 260.8 248 77.0
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 1.0e-67 260.8 243 77.8
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 1.0e-67 260.8 254 74.0
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 3.9e-67 258.8 248 77.0
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 8.7e-67 257.7 245 78.8
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 6.5e-62 241.5 147 83.0
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 7.9e-60 234.6 235 76.2
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 7.4e-58 228.0 239 78.2
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 9.7e-58 227.6 236 57.2
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 1.7e-57 226.9 155 76.8
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 9.1e-56 221.1 140 81.4
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 1.9e-53 213.4 143 72.0
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 3.2e-53 212.6 135 80.7
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 2.6e-50 203.0 139 70.5
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 2.6e-50 203.0 147 69.4
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 7.4e-50 201.4 143 66.4
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 4.8e-49 198.7 145 64.8
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 1.4e-48 197.2 147 67.3
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 1.7e-46 190.3 147 70.7
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 2.2e-46 189.9 143 62.2
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 1.5e-45 187.2 143 63.6
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 2.3e-43 179.9 142 62.0
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 5.7e-42 175.3 146 57.5
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 4.8e-41 172.2 144 57.6
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 1.0e-38 164.5 143 56.6
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 1.0e-38 164.5 143 55.9
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 2.2e-38 163.3 142 58.5
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 2.2e-38 163.3 147 57.1
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 5.0e-38 162.2 145 57.2
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 5.0e-38 162.2 142 56.3
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 2.5e-37 159.8 145 51.7
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 4.2e-37 159.1 143 56.6
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 5.5e-37 158.7 145 56.6
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 9.4e-37 157.9 143 58.0
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 1.2e-36 157.5 143 57.3
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 1.6e-36 157.1 143 51.7
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 2.1e-36 156.8 143 52.4
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 2.1e-36 156.8 143 55.2
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 2.7e-36 156.4 144 56.9
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 6.1e-36 155.2 144 53.5
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 8.0e-36 154.8 142 52.1
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 1.4e-35 154.1 142 52.1
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 5.2e-35 152.1 148 53.4
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 5.2e-35 152.1 146 54.8
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 6.8e-35 151.8 142 50.7
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 6.8e-35 151.8 147 53.1
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 6.8e-35 151.8 142 54.2
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 1.2e-34 151.0 142 50.7
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 2.6e-34 149.8 144 53.5
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 2.6e-34 149.8 142 53.5
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 2.6e-34 149.8 269 36.4
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 4.4e-34 149.1 142 52.1
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 5.7e-34 148.7 146 50.7
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 9.8e-34 147.9 137 52.6
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 9.8e-34 147.9 234 41.0
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 1.3e-33 147.5 235 38.3
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 1.7e-33 147.1 137 52.6
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 1.7e-33 147.1 142 49.3
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 2.2e-33 146.7 143 51.7
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 2.8e-33 146.4 143 50.3
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 4.8e-33 145.6 143 49.0
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 6.3e-33 145.2 151 51.7
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 1.4e-32 144.1 153 49.0
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 1.8e-32 143.7 143 51.0
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 2.4e-32 143.3 145 52.4
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 3.1e-32 142.9 145 47.6
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 4.1e-32 142.5 143 53.8
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 5.4e-32 142.1 146 52.7
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 7.0e-32 141.7 143 49.0
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 7.0e-32 141.7 145 47.6
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 7.0e-32 141.7 144 51.4
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 1.2e-31 141.0 142 52.8
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 1.2e-31 141.0 142 47.9
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.0e-30 137.9 143 48.3
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 1.3e-30 137.5 143 49.7
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.3e-30 137.5 143 48.3
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.3e-30 137.5 143 48.3
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 1.7e-30 137.1 142 48.6
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 1.7e-30 137.1 145 47.6
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 1.7e-30 137.1 145 49.0
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 2.9e-30 136.3 148 50.7
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 3.8e-30 136.0 142 51.4
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 6.5e-30 135.2 140 50.0
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 8.5e-30 134.8 145 46.9
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 8.5e-30 134.8 144 50.7
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 1.9e-29 133.7 142 47.9
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 9.5e-29 131.3 143 46.2
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 1.2e-28 131.0 140 50.7
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 1.6e-28 130.6 143 49.7
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 3.6e-28 129.4 143 44.8
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 8.0e-28 128.3 236 36.4
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 1.0e-27 127.9 143 46.2
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 1.4e-27 127.5 107 63.6
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 1.4e-27 127.5 146 46.6
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 1.8e-27 127.1 147 50.3
Sp5g31920 Schrenkiella parvula HOM05D005242 ORTHO05D006778 8.8e-27 124.8 72 87.5
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 2.6e-26 123.2 153 45.8
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 2.6e-26 123.2 146 44.5
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 2.6e-26 123.2 144 43.1
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 3.7e-25 119.4 144 46.5
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 8.3e-25 118.2 103 58.3
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 9.2e-24 114.8 140 45.7
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 1.7e-22 110.5 143 39.2
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 2.9e-22 109.8 109 52.3
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 3.8e-22 109.4 105 51.4
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 6.6e-22 108.6 145 47.6
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 1.5e-21 107.5 143 39.2
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 3.6e-20 102.8 139 41.0
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 8.0e-20 101.7 141 41.1
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 5.2e-19 99.0 144 42.4
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 1.5e-18 97.4 142 38.0
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 2.6e-18 96.7 212 28.3
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 2.6e-18 96.7 179 33.5
Carub.0002s2369 Capsella rubella HOM05D005242 ORTHO05D018625 3.4e-18 96.3 66 65.2
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 7.5e-18 95.1 146 37.0
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 1.3e-17 94.4 207 31.4
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 2.2e-17 93.6 245 23.7
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 4.9e-17 92.4 250 23.2
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 6.4e-17 92.0 95 50.5
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 8.3e-17 91.7 104 45.2
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 1.4e-16 90.9 250 23.6
TWI60G1058 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 5.9e-15 85.5 66 60.6
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 1.5e-13 80.9 103 40.8
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 1.4e-11 74.3 98 40.8
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 4.4e-10 69.3 76 43.4
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 5.8e-10 68.9 109 36.7
HPP92_004419 Vanilla planifolia HOM05D024549 ORTHO05D006778 1.4e-08 64.3 143 32.2
SEGI_03948 Sequoiadendron giganteum HOM05D005242 ORTHO05D000080 4.1e-08 62.8 135 30.4
Phvul.004G094700 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 7.0e-08 62.0 64 45.3
HPP92_016117 Vanilla planifolia HOM05D000136 ORTHO05D000080 6.0e-07 58.9 133 33.8
Manes.15G189500 Manihot esculenta HOM05D000136 ORTHO05D000080 1.7e-06 57.4 135 32.6
Aa31LG9G11750 Aethionema arabicum HOM05D000136 ORTHO05D000080 2.3e-06 57.0 135 34.8
Ca_10684_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 3.9e-06 56.2 66 47.0
BraA09t38820Z Brassica rapa HOM05D000136 ORTHO05D000080 5.0e-06 55.8 114 39.5
SEGI_23493 Sequoiadendron giganteum HOM05D000136 ORTHO05D026137 5.0e-06 55.8 108 30.6
A09p32850 Brassica napus HOM05D000136 ORTHO05D000080 6.6e-06 55.5 114 38.6
MBI03_g21085_MAGBIO Magnolia biondii HOM05D000136 ORTHO05D000080 6.6e-06 55.5 113 35.4
Manes.10G121600 Manihot esculenta HOM05D000136 ORTHO05D000080 6.6e-06 55.5 134 34.3
Manes.10G127300 Manihot esculenta HOM05D000136 ORTHO05D000080 6.6e-06 55.5 134 34.3


User provided reference genes

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