Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR069700 Cardamine hirsuta HOM05D005792 ORTHO05D007171 1.7e-174 615.9 310 100.0
AT1G76150 Arabidopsis thaliana HOM05D005792 ORTHO05D007171 4.3e-162 574.7 310 91.6
AL2G36210 Arabidopsis lyrata HOM05D005792 ORTHO05D007171 5.6e-162 574.3 310 91.6
Carub.0002s2304 Capsella rubella HOM05D005792 ORTHO05D007171 2.0e-159 565.8 310 90.0
Sp5g31280 Schrenkiella parvula HOM05D005792 ORTHO05D007171 1.7e-158 562.8 311 90.4
BcaC08g47286 Brassica carinata HOM05D005792 ORTHO05D007171 1.1e-157 560.1 310 89.4
Thhalv10018917m.g Eutrema salsugineum HOM05D005792 ORTHO05D007171 1.3e-155 553.1 310 88.4
C06p50100 Brassica napus HOM05D005792 ORTHO05D007171 5.8e-151 537.7 310 86.8
BraA07t31701Z Brassica rapa HOM05D005792 ORTHO05D007171 9.8e-151 537.0 310 87.1
A07p41720 Brassica napus HOM05D005792 ORTHO05D007171 4.1e-149 531.6 310 85.2
BcaNung05119 Brassica carinata HOM05D005792 ORTHO05D007171 3.0e-147 525.4 310 85.2
Aa31LG4G6270 Aethionema arabicum HOM05D005792 ORTHO05D007171 4.3e-146 521.5 310 84.2
THA.LOC104813765 Tarenaya hassleriana HOM05D005792 ORTHO05D007171 3.4e-143 511.9 310 80.0
BolC6t40050H Brassica oleracea HOM05D005792 ORTHO05D007171 2.3e-139 499.2 357 73.4
Manes.18G007700 Manihot esculenta HOM05D005792 ORTHO05D007171 2.3e-131 472.6 308 73.1
Potri.005G247600 Populus trichocarpa HOM05D005792 ORTHO05D007171 3.0e-131 472.2 309 72.5
TWI36G1625 Tripterygium wilfordii HOM05D005792 ORTHO05D007171 9.9e-127 457.2 308 72.7
CsaV3_2G024540 Cucumis sativus L. HOM05D005792 ORTHO05D007171 3.2e-125 452.2 310 69.7
Thecc.08G054700 Theobroma cacao HOM05D005792 ORTHO05D007171 3.2e-125 452.2 305 72.1
Prupe.1G357300 Prunus persica HOM05D005792 ORTHO05D007171 1.6e-124 449.9 310 71.0
CiPaw.08G070700 Carya illinoinensis HOM05D005792 ORTHO05D007171 2.7e-124 449.1 308 70.1
Atru.chr13.181 Acer truncatum HOM05D005792 ORTHO05D007171 3.5e-124 448.7 309 71.5
Eucgr.F01710 Eucalyptus grandis HOM05D005792 ORTHO05D007171 4.6e-124 448.4 310 70.0
Glyma.06G019900 Glycine max HOM05D005792 ORTHO05D007171 7.9e-124 447.6 307 70.4
Ca_15448_v3 Cicer arietinum L. HOM05D005792 ORTHO05D007171 1.3e-123 446.8 308 69.5
MELO3C011330.2 Cucumis melo HOM05D005792 ORTHO05D007171 3.0e-123 445.7 324 67.3
CiPaw.08G070500 Carya illinoinensis HOM05D005792 ORTHO05D007171 6.7e-123 444.5 308 69.8
BcaC08g47109 Brassica carinata HOM05D005792 ORTHO05D007171 8.7e-123 444.1 303 76.2
Lalb_Chr23g0265871 Lupinus albus HOM05D005792 ORTHO05D007171 1.1e-122 443.7 308 68.5
VMungo1309G0997 Vigna mungo HOM05D005792 ORTHO05D007171 1.1e-122 443.7 308 68.5
Psat5g010960 Pisum sativum HOM05D005792 ORTHO05D007171 7.4e-122 441.0 308 68.2
Atru.chr13.183 Acer truncatum HOM05D005792 ORTHO05D007171 1.6e-121 439.9 310 68.7
CANSAT51G0003 Cannabis sativa HOM05D005792 ORTHO05D007171 2.8e-121 439.1 310 69.4
FvH4_2g37800 Fragaria vesca HOM05D005792 ORTHO05D007171 3.7e-121 438.7 304 70.4
Sed0026749 Sechium edule HOM05D005792 ORTHO05D007171 6.2e-121 438.0 310 67.7
Medtr3g115040 Medicago truncatula HOM05D005792 ORTHO05D007171 1.1e-120 437.2 305 69.2
Duzib093G0813 Durio zibethinus HOM05D005792 ORTHO05D007171 3.1e-120 435.6 308 67.2
Lj1g0011663 Lotus japonicus HOM05D005792 ORTHO05D007171 3.1e-120 435.6 304 68.8
PGR083G0297 Punica granatum HOM05D005792 ORTHO05D007171 4.0e-120 435.3 305 67.9
Atru.chr1.2256 Acer truncatum HOM05D005792 ORTHO05D007171 5.3e-120 434.9 309 68.0
Glyma.04G019600 Glycine max HOM05D005792 ORTHO05D007171 5.3e-120 434.9 314 68.2
RcHm_v2.0_Chr6g0303911 Rosa chinensis HOM05D005792 ORTHO05D007171 6.9e-120 434.5 305 69.5
Gohir.D05G256800 Gossypium hirsutum HOM05D005792 ORTHO05D007171 4.5e-119 431.8 308 67.2
Gorai.009G268300 Gossypium raimondii HOM05D005792 ORTHO05D007171 5.8e-119 431.4 308 67.2
Manes.05G141100 Manihot esculenta HOM05D005792 ORTHO05D007171 1.3e-118 430.3 308 67.2
Nitab4.5_0000498g0200 Nicotiana tabacum HOM05D005792 ORTHO05D007171 2.2e-118 429.5 308 67.5
QL02p013536 Quercus lobata HOM05D005792 ORTHO05D007171 2.9e-118 429.1 314 66.9
MD08G1005200 Malus domestica HOM05D005792 ORTHO05D007171 3.8e-118 428.7 305 69.2
Sed0027939 Sechium edule HOM05D005792 ORTHO05D007171 3.8e-118 428.7 310 66.1
Dinv39569 Davidia involucrata HOM05D005792 ORTHO05D007171 7.1e-117 424.5 308 66.2
Ciclev10001939m.g Citrus clementina HOM05D005792 ORTHO05D007171 1.2e-116 423.7 309 67.6
Nitab4.5_0002353g0010 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.2e-116 423.7 306 66.7
AUR62013837 Chenopodium quinoa HOM05D005792 ORTHO05D007171 8.7e-115 417.5 302 65.9
arahy.Tifrunner.gnm1.ann1.NZM2IS Arachis hypogaea HOM05D005792 ORTHO05D007171 1.9e-114 416.4 336 61.6
CSS0018708 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 4.3e-114 415.2 310 64.5
CAN.G401.3 Capsicum annuum HOM05D005792 ORTHO05D007171 7.4e-114 414.5 308 66.2
Aqoxy6G01867 Aquilegia oxysepala HOM05D005792 ORTHO05D007171 9.6e-114 414.1 307 63.2
Hund05134 Selenicereus undatus HOM05D005792 ORTHO05D007171 9.6e-114 414.1 308 64.9
EL10Ac1g02028 Beta vulgaris HOM05D005792 ORTHO05D007171 1.3e-113 413.7 306 64.7
CSS0011850 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.6e-113 413.3 310 64.2
Peaxi162Scf00064g00910 Petunia axillaris HOM05D005792 ORTHO05D007171 2.1e-113 412.9 308 66.2
Solyc12g094450.3 Solanum lycopersicum HOM05D005792 ORTHO05D007171 3.7e-113 412.1 308 64.9
HanXRQChr14g0429001 Helianthus annuus HOM05D005792 ORTHO05D007171 4.8e-113 411.8 306 65.4
Nn5g30890 Nelumbo nucifera HOM05D005792 ORTHO05D007171 4.8e-113 411.8 309 63.4
Sopen12g031340 Solanum pennellii HOM05D005792 ORTHO05D007171 1.4e-112 410.2 308 64.6
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 1.8e-112 409.8 281 71.2
Sc26g0004560 Simmondsia chinensis HOM05D005792 ORTHO05D007171 1.8e-112 409.8 300 66.3
CSS0016825 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 3.1e-112 409.1 315 63.5
ECA238G1749 Erigeron canadensis HOM05D005792 ORTHO05D007171 6.9e-112 407.9 305 64.9
Migut.C00916 Erythranthe guttata HOM05D005792 ORTHO05D007171 1.5e-111 406.8 308 64.0
Duzib116G0262 Durio zibethinus HOM05D005792 ORTHO05D007171 2.0e-111 406.4 276 68.8
GSVIVG01008709001 Vitis vinifera HOM05D005792 ORTHO05D007171 2.0e-111 406.4 305 63.6
Os09g0544900 Oryza sativa ssp. japonica HOM05D005792 ORTHO05D007171 3.4e-111 405.6 303 64.7
vmacro21840 Vaccinium macrocarpon HOM05D005792 ORTHO05D007171 4.5e-111 405.2 339 59.0
Lsat_1_v5_gn_2_5940 Lactuca sativa HOM05D005792 ORTHO05D007171 7.6e-111 404.4 309 64.4
Haze_22736 Corylus avellana HOM05D005792 ORTHO05D007171 2.2e-110 402.9 290 67.9
Hma1.2p1_1260F.1_g270990 Hydrangea macrophylla HOM05D005792 ORTHO05D007171 3.8e-110 402.1 308 63.0
PGSC0003DMG400029326 Solanum tuberosum HOM05D005792 ORTHO05D007171 2.5e-109 399.4 337 59.6
PSO541G2987 Papaver somniferum HOM05D005792 ORTHO05D007171 1.2e-108 397.1 300 63.3
Cc10_g00990 Coffea canephora HOM05D005792 ORTHO05D007171 3.5e-108 395.6 316 61.4
unitig_747.g21523 Utricularia gibba HOM05D005792 ORTHO05D007171 3.0e-107 392.5 306 61.4
Lj4C15T2 Lonicera japonica HOM05D005792 ORTHO05D007171 3.9e-107 392.1 305 61.6
Gohir.A05G255200 Gossypium hirsutum HOM05D005792 ORTHO05D007171 6.7e-107 391.3 313 62.3
ClCG08G013930 Citrullus lanatus HOM05D005792 ORTHO05D007171 1.5e-106 390.2 350 58.0
Rhsim06G0009800 Rhododendron simsii HOM05D005792 ORTHO05D007171 4.3e-106 388.7 307 61.6
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 6.3e-105 384.8 285 67.7
SalBow7G0964 Salvia bowleyana HOM05D005792 ORTHO05D007171 1.8e-104 383.3 307 59.6
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 3.4e-103 379.0 282 67.4
MBI08_g05391_MAGBIO Magnolia biondii HOM05D005792 ORTHO05D007171 5.9e-103 378.3 283 64.7
TAR625G0413 Trochodendron aralioides HOM05D005792 ORTHO05D007171 4.2e-101 372.1 284 66.2
Actinidia15473 Actinidia chinensis HOM05D005792 ORTHO05D007171 2.3e-99 366.3 320 57.8
SGA_v2.0_scaffold351G49656 Striga asiatica HOM05D005792 ORTHO05D007171 1.9e-98 363.2 315 57.8
DCAR_016749 Daucus carota HOM05D005792 ORTHO05D007171 2.6e-95 352.8 365 51.0
Ah.11g040640 Amaranthus hybridus HOM05D005792 ORTHO05D007171 2.3e-91 339.7 306 56.2
SHI08027 Sapria himalayana HOM05D005792 ORTHO05D007171 8.2e-89 331.3 295 56.9
Nitab4.5_0000588g0300 Nicotiana tabacum HOM05D005792 ORTHO05D007171 6.9e-88 328.2 308 55.8
Pp3c4_24330 Physcomitrium patens HOM05D005792 ORTHO05D007171 6.9e-88 328.2 309 55.0
DCAR_013899 Daucus carota HOM05D005792 ORTHO05D007171 3.4e-87 325.9 305 55.1
COL.COLO4_26053 Corchorus olitorius HOM05D005792 ORTHO05D007171 7.7e-87 324.7 313 56.2
PSO675G2870 Papaver somniferum HOM05D005792 ORTHO05D007171 7.7e-87 324.7 300 56.0
Haze_22722 Corylus avellana HOM05D005792 ORTHO05D007171 8.5e-86 321.2 282 59.6
Zm00001eb104070 Zea mays HOM05D005792 ORTHO05D007171 1.4e-83 313.9 237 64.1
AUR62036768 Chenopodium quinoa HOM05D005792 ORTHO05D007171 1.7e-81 307.0 283 55.8
Phvul.009G020900 Phaseolus vulgaris HOM05D005792 ORTHO05D007171 6.3e-81 305.1 221 65.6
Gohir.D02G118150 Gossypium hirsutum HOM05D005792 ORTHO05D007171 3.1e-80 302.8 245 61.6
SMO174G0111 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 1.3e-78 297.4 300 51.0
Mapoly0135s0031 Marchantia polymorpha HOM05D005792 ORTHO05D007171 3.6e-68 262.7 310 43.9
arahy.Tifrunner.gnm1.ann1.CIDL5D Arachis hypogaea HOM05D005792 ORTHO05D007171 1.4e-67 260.8 197 63.5
ATR0661G150 Amborella trichopoda HOM05D005792 ORTHO05D007171 1.3e-65 254.2 192 66.7
Zm00001eb321160 Zea mays HOM05D005792 ORTHO05D007171 1.3e-65 254.2 213 57.7
Oeu021471.1 Olea europaea HOM05D005792 ORTHO05D007171 3.1e-64 249.6 197 59.9
TAR625G0324 Trochodendron aralioides HOM05D005792 ORTHO05D007171 2.7e-63 246.5 167 72.5
SEGI_22358 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 7.7e-63 245.0 198 62.6
MSTRG.25290 Avicennia marina HOM05D005792 ORTHO05D007171 1.2e-60 237.7 198 56.6
Sabra02G0010800 Salix brachista HOM05D005792 ORTHO05D007171 1.6e-55 220.7 231 53.7
CBR_g50912 Chara braunii HOM05D005792 ORTHO05D007171 4.0e-51 206.1 398 35.4
AagrBONN_evm.TU.Sc2ySwM_117.3246 Anthoceros agrestis HOM05D005792 ORTHO05D007171 1.6e-47 194.1 206 49.5
TPR.G753 Trifolium pratense HOM05D005792 ORTHO05D007171 1.6e-47 194.1 137 69.3
TPR.G38109 Trifolium pratense HOM05D005792 ORTHO05D007171 6.0e-47 192.2 305 38.0
CDE05G1591 Ceratophyllum demersum HOM05D005792 ORTHO05D007171 1.1e-45 188.0 150 56.7
Actinidia17028 Actinidia chinensis HOM05D005792 ORTHO05D007171 4.9e-41 172.6 159 53.5
CSS0030340 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 2.3e-38 163.7 131 62.6
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 1.6e-36 157.5 294 35.7
Cre06.g308100 Chlamydomonas reinhardtii HOM05D005792 ORTHO05D007171 1.6e-31 141.0 287 32.8
TAR625G0970 Trochodendron aralioides HOM05D005792 ORTHO05D007171 3.5e-31 139.8 103 61.2
HPP92_014386 Vanilla planifolia HOM05D005792 ORTHO05D007171 2.3e-30 137.1 113 56.6
Hund05135 Selenicereus undatus HOM05D005792 ORTHO05D007171 4.7e-28 129.4 277 31.8
SalBow6G2635 Salvia bowleyana HOM05D005792 ORTHO05D007171 4.1e-24 116.3 83 65.1
CBR_g22029 Chara braunii HOM05D005792 ORTHO05D007171 1.2e-23 114.8 150 45.3
SMO174G0016 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 9.3e-16 88.6 82 57.3
Sabra02G0010700 Salix brachista HOM05D000201 ORTHO05D000490 1.5e-13 81.3 62 58.1
Mapoly0033s0029 Marchantia polymorpha HOM05D005792 ORTHO05D007171 1.8e-11 74.3 161 31.7
ATR0661G053 Amborella trichopoda HOM05D005792 ORTHO05D007171 3.1e-11 73.6 65 56.9
COL.COLO4_12452 Corchorus olitorius HOM05D005792 ORTHO05D007171 9.0e-11 72.0 73 50.7
SMO174G0053 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 2.0e-10 70.9 77 49.4
Cpa.g.sc26.236 Carica papaya HOM05D005792 ORTHO05D007171 1.4e-08 64.7 36 83.3


User provided reference genes

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