Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR069410 Cardamine hirsuta HOM05D008819 ORTHO05D003197 3.5e-141 505.0 260 100.0
AL2G35870 Arabidopsis lyrata HOM05D008819 ORTHO05D003197 1.4e-73 280.4 272 64.0
Thhalv10019693m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 3.0e-68 262.7 249 61.4
Carub.0002s2277 Capsella rubella HOM05D008819 ORTHO05D003197 5.1e-68 261.9 289 55.7
AT1G75860 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 5.3e-65 251.9 277 56.7
Sp5g31000 Schrenkiella parvula HOM05D008819 ORTHO05D003197 1.1e-54 217.6 309 50.8
BcaC08g47079 Brassica carinata HOM05D008819 ORTHO05D003197 4.1e-49 199.1 290 49.0
BolC6t40021H Brassica oleracea HOM05D008819 ORTHO05D003197 1.7e-47 193.7 240 53.8
Aa31LG4G6060 Aethionema arabicum HOM05D008819 ORTHO05D003197 2.2e-47 193.4 283 48.8
BcaC08g47318 Brassica carinata HOM05D008819 ORTHO05D003197 3.2e-46 189.5 239 51.5
A07p41430 Brassica napus HOM05D008819 ORTHO05D003197 2.7e-45 186.4 229 52.0
C06p49830 Brassica napus HOM05D008819 ORTHO05D003197 8.0e-45 184.9 239 51.5
Aa31LG7G4540 Aethionema arabicum HOM05D008819 ORTHO05D003197 7.7e-40 168.3 282 40.4
AT1G20100 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 1.5e-38 164.1 282 42.2
Carub.0001s1963 Capsella rubella HOM05D008819 ORTHO05D003197 3.0e-36 156.4 221 45.7
BcaNung03339 Brassica carinata HOM05D008819 ORTHO05D003197 2.0e-32 143.7 224 44.2
THA.LOC104809551 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 4.5e-32 142.5 295 38.3
C07p23350 Brassica napus HOM05D008819 ORTHO05D003197 5.9e-32 142.1 224 44.2
BolC7t42868H Brassica oleracea HOM05D008819 ORTHO05D003197 5.9e-32 142.1 224 45.5
BolC5t30570H Brassica oleracea HOM05D008819 ORTHO05D003197 1.0e-31 141.4 220 43.6
A06p16240 Brassica napus HOM05D008819 ORTHO05D003197 5.5e-30 135.6 273 39.9
THA.LOC104813782 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 2.1e-29 133.7 231 42.9
Thhalv10008464m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 1.8e-28 130.6 262 42.0
BcaC05g25908 Brassica carinata HOM05D008819 ORTHO05D003197 2.3e-28 130.2 270 39.3
C05p18590 Brassica napus HOM05D008819 ORTHO05D003197 2.3e-28 130.2 270 39.3
BraA06t24727Z Brassica rapa HOM05D008819 ORTHO05D003197 2.3e-28 130.2 273 40.3
BcaB07g32025 Brassica carinata HOM05D008819 ORTHO05D003197 6.3e-26 122.1 281 38.4
BolC3t16044H Brassica oleracea HOM05D008819 ORTHO05D003197 5.4e-25 119.0 207 41.5
BcaC01g06727 Brassica carinata HOM05D008819 ORTHO05D003197 4.5e-24 115.9 203 40.4
Sp1g17870 Schrenkiella parvula HOM05D008819 ORTHO05D003197 5.9e-24 115.5 225 36.9
BcaB03g14340 Brassica carinata HOM05D008819 ORTHO05D003197 1.2e-21 107.8 230 37.8
BcaB03g14414 Brassica carinata HOM05D008819 ORTHO05D003197 1.2e-21 107.8 227 37.4
C03p37510 Brassica napus HOM05D008819 ORTHO05D003197 2.8e-21 106.7 212 37.7
CARHR020580 Cardamine hirsuta HOM05D008819 ORTHO05D003197 6.8e-20 102.1 170 42.4
THA.LOC104813240 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 9.8e-19 98.2 269 35.3
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 1.2e-16 91.3 246 33.7
COL.COLO4_26117 Corchorus olitorius HOM05D004095 ORTHO05D003197 8.6e-15 85.1 252 31.3
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 8.6e-15 85.1 271 32.5
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 7.3e-14 82.0 218 32.6
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 7.3e-14 82.0 218 32.6
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 9.5e-14 81.6 213 31.5
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 9.5e-14 81.6 227 31.3
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 3.6e-13 79.7 244 29.1
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.6e-13 79.7 227 31.3
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 3.6e-13 79.7 227 32.6
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 8.0e-13 78.6 257 29.2
Sed0017695 Sechium edule HOM05D004095 ORTHO05D003197 1.4e-12 77.8 232 29.7
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 1.8e-12 77.4 226 28.3
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 2.3e-12 77.0 247 32.0
AL2G36300 Arabidopsis lyrata HOM05D014797 ORTHO05D016596 5.2e-12 75.9 155 36.1
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 5.2e-12 75.9 276 31.9
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 8.9e-12 75.1 244 31.1
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 1.2e-11 74.7 231 28.6
Hund01666 Selenicereus undatus HOM05D004095 ORTHO05D003197 2.6e-11 73.6 299 28.8
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 5.8e-11 72.4 248 29.8
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 9.8e-11 71.6 266 28.6
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 2.9e-10 70.1 253 30.0
Lj5g0025072 Lotus japonicus HOM05D004095 ORTHO05D003197 2.9e-10 70.1 214 26.6
Prupe.1G362800 Prunus persica HOM05D004095 ORTHO05D003197 2.9e-10 70.1 291 27.5
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.7e-10 69.7 249 29.7
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 4.9e-10 69.3 252 31.0
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 4.9e-10 69.3 287 28.6
PSO700G0117 Papaver somniferum HOM05D004095 ORTHO05D003197 6.4e-10 68.9 275 28.4
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 8.3e-10 68.6 279 28.3
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 2.4e-09 67.0 268 25.0
AUR62040566 Chenopodium quinoa HOM05D004095 ORTHO05D003197 2.4e-09 67.0 260 29.6
Prupe.1G362500 Prunus persica HOM05D004095 ORTHO05D003197 2.4e-09 67.0 280 27.9
Gohir.A05G185000 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.2e-09 66.6 280 28.9
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 3.2e-09 66.6 256 30.1
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 5.4e-09 65.9 268 24.6
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 5.4e-09 65.9 248 30.2
CiPaw.08G067700 Carya illinoinensis HOM05D004095 ORTHO05D003197 7.0e-09 65.5 225 28.0
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 7.0e-09 65.5 203 32.5
CsaV3_2G024280 Cucumis sativus L. HOM05D004095 ORTHO05D003197 9.2e-09 65.1 258 28.3
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 9.2e-09 65.1 280 28.6
AUR62041467 Chenopodium quinoa HOM05D004095 ORTHO05D003197 1.2e-08 64.7 271 28.8
FAN19G1292 Fragaria x ananassa HOM05D024588 ORTHO05D003197 1.2e-08 64.7 113 32.7
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 1.2e-08 64.7 236 28.0
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 1.6e-08 64.3 226 27.4
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 1.6e-08 64.3 246 29.3
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 2.1e-08 63.9 241 29.0
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 2.1e-08 63.9 248 29.4
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 2.1e-08 63.9 248 31.0
Lj4A799T84 Lonicera japonica HOM05D004095 ORTHO05D003197 2.7e-08 63.5 217 29.0
ClCG08G014140 Citrullus lanatus HOM05D004095 ORTHO05D003197 3.5e-08 63.2 261 27.2
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 3.5e-08 63.2 247 30.0
PSO170G2543 Papaver somniferum HOM05D004095 ORTHO05D003197 4.6e-08 62.8 311 24.8
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 4.6e-08 62.8 278 27.0
Migut.C00862 Erythranthe guttata HOM05D004095 ORTHO05D003197 6.0e-08 62.4 301 28.2
unitig_0.g2088 Utricularia gibba HOM05D004095 ORTHO05D003197 6.0e-08 62.4 92 37.0
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 7.8e-08 62.0 242 28.1
FvH4_2g38160 Fragaria vesca HOM05D004095 ORTHO05D003197 7.8e-08 62.0 206 30.6
Gohir.D12G193466 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.0e-07 61.6 79 45.6
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 1.3e-07 61.2 246 28.5
CARHR069790 Cardamine hirsuta HOM05D014797 ORTHO05D016596 1.3e-07 61.2 227 30.4
FAN20G0678 Fragaria x ananassa HOM05D004095 ORTHO05D003197 1.7e-07 60.8 211 31.3
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 2.3e-07 60.5 265 26.8
Gorai.008G208400 Gossypium raimondii HOM05D004095 ORTHO05D003197 3.0e-07 60.1 125 35.2
RcHm_v2.0_Chr2g0098961 Rosa chinensis HOM05D024588 ORTHO05D003197 3.0e-07 60.1 114 36.0
MSTRG.25264 Avicennia marina HOM05D004095 ORTHO05D003197 3.9e-07 59.7 126 30.2
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 3.9e-07 59.7 287 26.5
Cpa.g.sc26.299 Carica papaya HOM05D004095 ORTHO05D003197 5.0e-07 59.3 88 37.5
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 5.0e-07 59.3 283 30.4
FAN15G2156 Fragaria x ananassa HOM05D004095 ORTHO05D003197 5.0e-07 59.3 256 30.5
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 5.0e-07 59.3 274 25.2
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 6.6e-07 58.9 283 25.8
MELO3C011353.2 Cucumis melo HOM05D004095 ORTHO05D003197 6.6e-07 58.9 274 25.9
Nn5g30782 Nelumbo nucifera HOM05D004095 ORTHO05D003197 6.6e-07 58.9 83 37.3
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 6.6e-07 58.9 262 28.2
PGR119G1825 Punica granatum HOM05D004095 ORTHO05D003197 1.1e-06 58.2 91 35.2
Oeu007365.1 Olea europaea HOM05D004095 ORTHO05D003197 1.9e-06 57.4 293 27.0
SalBow7G2790 Salvia bowleyana HOM05D004095 ORTHO05D003197 1.9e-06 57.4 266 25.6
Sc15g0004790 Simmondsia chinensis HOM05D004095 ORTHO05D003197 1.9e-06 57.4 245 27.3
SGA_v2.0_scaffold19G08554 Striga asiatica HOM05D004095 ORTHO05D003197 1.9e-06 57.4 84 36.9
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 2.5e-06 57.0 256 30.5
FAN27G1813 Fragaria x ananassa HOM05D004095 ORTHO05D003197 4.3e-06 56.2 263 28.5
Gorai.008G131100 Gossypium raimondii HOM05D004095 ORTHO05D003197 4.3e-06 56.2 253 30.4
QL02p012206 Quercus lobata HOM05D004095 ORTHO05D003197 4.3e-06 56.2 95 34.7
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 4.3e-06 56.2 273 27.1
unitig_749.g13901 Utricularia gibba HOM05D004095 ORTHO05D003197 4.3e-06 56.2 244 28.3
Thhalv10022767m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 5.6e-06 55.8 138 32.6
Sabra05G0187500 Salix brachista HOM05D004095 ORTHO05D003197 5.6e-06 55.8 260 27.7
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 7.3e-06 55.5 299 27.8


User provided reference genes

Program Settings