Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR069300 Cardamine hirsuta HOM05D004232 ORTHO05D004909 2.1e-64 248.8 123 100.0
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 1.5e-30 136.3 69 94.2
Thhalv10018400m.g Eutrema salsugineum HOM05D004232 ORTHO05D004909 1.6e-24 116.3 69 81.2
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 2.2e-24 115.9 69 82.6
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 3.7e-24 115.2 69 81.2
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 1.4e-23 113.2 69 82.6
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 1.4e-23 113.2 69 82.6
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 1.8e-23 112.8 69 81.2
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 1.8e-23 112.8 69 81.2
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 9.0e-23 110.5 69 78.3
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 1.2e-22 110.2 69 81.2
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 1.2e-22 110.2 71 77.5
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 1.5e-22 109.8 69 75.4
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 2.0e-22 109.4 69 78.3
BraA09t37368Z Brassica rapa HOM05D004232 ORTHO05D004909 3.4e-22 108.6 73 72.6
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 2.9e-21 105.5 69 75.4
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 2.9e-21 105.5 69 75.4
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 2.9e-21 105.5 69 75.4
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 2.9e-21 105.5 69 75.4
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 8.5e-21 104.0 67 73.1
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.4e-20 103.2 67 73.1
BcaB07g31225 Brassica carinata HOM05D004232 ORTHO05D004909 3.2e-20 102.1 69 72.5
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 4.2e-20 101.7 67 71.6
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 4.2e-20 101.7 66 72.7
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 5.5e-20 101.3 66 72.7
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 2.1e-19 99.4 67 67.2
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 6.1e-19 97.8 67 68.7
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 6.1e-19 97.8 67 68.7
COL.COLO4_18748 Corchorus olitorius HOM05D004232 ORTHO05D004909 7.9e-19 97.4 67 68.7
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 1.8e-18 96.3 69 62.3
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 5.1e-18 94.7 69 65.2
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 5.1e-18 94.7 69 66.7
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 6.7e-18 94.4 69 68.1
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 8.8e-18 94.0 67 65.7
Cpa.g.sc46.107 Carica papaya HOM05D004232 ORTHO05D004909 1.1e-17 93.6 67 68.7
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 1.5e-17 93.2 67 62.7
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 1.5e-17 93.2 111 47.7
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 1.5e-17 93.2 67 67.2
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 2.5e-17 92.4 69 60.9
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 2.5e-17 92.4 70 61.4
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 3.3e-17 92.0 67 64.2
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 5.7e-17 91.3 118 43.2
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 5.7e-17 91.3 65 67.7
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 7.4e-17 90.9 117 43.6
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 9.7e-17 90.5 65 66.2
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.3e-16 90.1 66 65.2
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 1.7e-16 89.7 113 45.1
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 2.8e-16 89.0 69 60.9
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 2.8e-16 89.0 80 56.2
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 2.8e-16 89.0 111 45.9
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 3.7e-16 88.6 78 57.7
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 4.8e-16 88.2 67 62.7
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 4.8e-16 88.2 67 62.7
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 4.8e-16 88.2 67 62.7
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 4.8e-16 88.2 67 62.7
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 4.8e-16 88.2 67 64.2
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 6.3e-16 87.8 67 61.2
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 6.3e-16 87.8 65 67.7
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 1.4e-15 86.7 69 60.9
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 3.1e-15 85.5 88 50.0
Dinv41413 Davidia involucrata HOM05D004232 ORTHO05D004909 3.1e-15 85.5 69 58.0
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 3.1e-15 85.5 67 59.7
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 3.1e-15 85.5 67 59.7
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 4.1e-15 85.1 63 66.7
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 4.1e-15 85.1 117 40.2
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 5.3e-15 84.7 69 56.5
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 5.3e-15 84.7 69 53.6
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 5.3e-15 84.7 70 57.1
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 6.9e-15 84.3 63 65.1
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 6.9e-15 84.3 69 56.5
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 6.9e-15 84.3 67 59.7
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 1.2e-14 83.6 67 55.2
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 1.2e-14 83.6 69 58.0
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 1.5e-14 83.2 79 53.2
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 1.5e-14 83.2 69 53.6
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 2.0e-14 82.8 63 63.5
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 2.0e-14 82.8 69 58.0
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 2.0e-14 82.8 67 59.7
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 2.6e-14 82.4 70 54.3
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 2.6e-14 82.4 65 61.5
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 2.6e-14 82.4 70 58.6
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 3.4e-14 82.0 63 63.5
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 3.4e-14 82.0 67 53.7
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 3.4e-14 82.0 88 48.9
ECA236G0371 Erigeron canadensis HOM05D004232 ORTHO05D004909 3.4e-14 82.0 69 58.0
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 3.4e-14 82.0 67 58.2
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 3.4e-14 82.0 70 55.7
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 4.5e-14 81.6 70 54.3
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 4.5e-14 81.6 69 56.5
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 4.5e-14 81.6 68 58.8
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 5.9e-14 81.3 70 58.6
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 1.3e-13 80.1 65 58.5
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 1.3e-13 80.1 63 58.7
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 2.2e-13 79.3 68 57.4
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 2.9e-13 79.0 69 56.5
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 2.9e-13 79.0 69 53.6
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 3.8e-13 78.6 68 57.4
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 5.0e-13 78.2 85 50.6
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 6.5e-13 77.8 69 58.0
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 6.5e-13 77.8 63 61.9
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 6.5e-13 77.8 63 60.3
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 8.5e-13 77.4 62 61.3
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 1.4e-12 76.6 79 49.4
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.4e-12 76.6 70 52.9
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 1.4e-12 76.6 68 57.4
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 1.9e-12 76.3 66 56.1
Rhsim01G0048600 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.9e-12 76.3 68 54.4
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 2.5e-12 75.9 65 56.9
Rhsim01G0048400 Rhododendron simsii HOM05D004232 ORTHO05D004909 3.2e-12 75.5 70 51.4
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 4.2e-12 75.1 67 52.2
ClCG06G012120 Citrullus lanatus HOM05D004232 ORTHO05D004909 5.5e-12 74.7 63 57.1
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 5.5e-12 74.7 69 53.6
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 7.2e-12 74.3 66 50.0
VMungo1215G1753 Vigna mungo HOM05D004232 ORTHO05D004909 7.2e-12 74.3 57 64.9
Lsat_1_v5_gn_8_59400 Lactuca sativa HOM05D004232 ORTHO05D004909 1.2e-11 73.6 66 48.5
ECA236G3428 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.6e-11 73.2 67 53.7
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 1.6e-11 73.2 63 58.7
Rhsim01G0048800 Rhododendron simsii HOM05D004232 ORTHO05D004909 2.1e-11 72.8 70 51.4
CARHR073800 Cardamine hirsuta HOM05D004232 ORTHO05D004909 1.8e-10 69.7 86 46.5
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 1.8e-10 69.7 102 40.2
Aqoxy7G03504 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 3.0e-10 68.9 70 50.0
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 3.9e-10 68.6 68 51.5
Zm00001eb028210 Zea mays HOM05D004232 ORTHO05D004909 5.1e-10 68.2 71 46.5
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 6.7e-10 67.8 98 42.9
Cpa.g.sc46.108 Carica papaya HOM05D004232 ORTHO05D004909 1.1e-09 67.0 69 52.2
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 2.0e-09 66.2 69 44.9
Glyma.17G103833 Glycine max HOM05D004232 ORTHO05D004909 7.4e-09 64.3 69 47.8
ECA236G4659 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.3e-08 63.5 64 51.6
Medtr4g116910 Medicago truncatula HOM05D004232 ORTHO05D004909 4.5e-06 55.1 109 34.9


User provided reference genes

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