Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR069180 Cardamine hirsuta HOM05D011922 ORTHO05D007252 1.8e-220 768.8 371 100.0
Carub.0002s2261 Capsella rubella HOM05D011922 ORTHO05D007252 1.6e-155 553.1 388 71.4
Sp5g30880 Schrenkiella parvula HOM05D011922 ORTHO05D007252 1.3e-141 506.9 386 68.4
Sp4g22180 Schrenkiella parvula HOM05D011922 ORTHO05D007252 2.5e-137 492.7 385 65.5
BraA07t30511Z Brassica rapa HOM05D011922 ORTHO05D007252 8.2e-136 487.6 386 65.5
A07p28710 Brassica napus HOM05D011922 ORTHO05D007252 1.8e-135 486.5 385 65.5
BcaB02g07042 Brassica carinata HOM05D011922 ORTHO05D007252 2.0e-134 483.0 392 64.3
BolC6t38364H Brassica oleracea HOM05D011922 ORTHO05D007252 9.4e-132 474.2 386 63.2
C06p32410 Brassica napus HOM05D011922 ORTHO05D007252 2.1e-131 473.0 386 63.0
BcaC08g45557 Brassica carinata HOM05D011922 ORTHO05D007252 4.7e-131 471.9 386 62.7
THA.LOC104813237 Tarenaya hassleriana HOM05D011922 ORTHO05D007252 2.5e-60 236.9 386 37.8
Carub.0002s2093 Capsella rubella HOM05D011922 ORTHO05D007252 1.9e-39 167.5 396 31.3
AL2G29880 Arabidopsis lyrata HOM05D011922 ORTHO05D007252 5.7e-36 156.0 407 30.2
Carub.0002s1719 Capsella rubella HOM05D011922 ORTHO05D007252 8.2e-35 152.1 380 31.1
AL1G48880 Arabidopsis lyrata HOM05D011922 ORTHO05D007252 2.2e-16 90.9 268 26.1
Lj4A650T22 Lonicera japonica HOM05D013022 ORTHO05D007252 3.2e-15 87.0 390 23.6
Lj4A649T29 Lonicera japonica HOM05D013022 ORTHO05D007252 6.1e-14 82.8 394 23.4
MBI19_g35552_MAGBIO Magnolia biondii HOM05D000007 ORTHO05D000017 5.7e-12 76.3 236 28.4
CSS0034833 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D003666 2.8e-11 73.9 319 26.3
Lj4A648G14 Lonicera japonica HOM05D013022 ORTHO05D007252 3.7e-11 73.6 315 22.5
Ciclev10033438m.g Citrus clementina HOM05D000007 ORTHO05D007252 4.8e-11 73.2 319 23.8
TAR371G0430 Trochodendron aralioides HOM05D000007 ORTHO05D007252 4.8e-11 73.2 244 29.1
TAR371G0392 Trochodendron aralioides HOM05D000007 ORTHO05D007252 1.1e-10 72.0 239 28.0
TAR371G0451 Trochodendron aralioides HOM05D000007 ORTHO05D007252 1.8e-10 71.2 243 31.3
Rhsim03G0268000 Rhododendron simsii HOM05D000007 ORTHO05D007252 2.4e-10 70.9 333 24.3
TAR371G0292 Trochodendron aralioides HOM05D000007 ORTHO05D007252 2.4e-10 70.9 238 28.2
CSS0040592 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D003666 3.1e-10 70.5 317 26.8
Oeu044692.1 Olea europaea HOM05D000007 ORTHO05D007252 3.1e-10 70.5 323 21.7
TAR371G0647 Trochodendron aralioides HOM05D000007 ORTHO05D007252 4.1e-10 70.1 242 26.4
TAR371G0448 Trochodendron aralioides HOM05D000007 ORTHO05D007252 5.3e-10 69.7 322 23.9
TAR371G0533 Trochodendron aralioides HOM05D000007 ORTHO05D007252 7.0e-10 69.3 348 24.4
TAR371G0593 Trochodendron aralioides HOM05D000007 ORTHO05D007252 7.0e-10 69.3 320 24.1
Dinv21217 Davidia involucrata HOM05D000007 ORTHO05D007252 2.6e-09 67.4 311 22.2
TAR371G0093 Trochodendron aralioides HOM05D000007 ORTHO05D007252 2.6e-09 67.4 328 25.9
Hma1.2p1_0022F.1_g014760 Hydrangea macrophylla HOM05D000007 ORTHO05D007252 4.5e-09 66.6 322 22.4
MBI15_g33468_MAGBIO Magnolia biondii HOM05D000007 ORTHO05D007252 1.0e-08 65.5 333 24.0
TAR375G0750 Trochodendron aralioides HOM05D000007 ORTHO05D007252 1.0e-08 65.5 323 24.8
Haze_12718 Corylus avellana HOM05D000007 ORTHO05D000039 3.8e-08 63.5 192 29.7
Os12g0164300 Oryza sativa ssp. japonica HOM05D000007 ORTHO05D000017 3.8e-08 63.5 252 24.6
MBI19_g26732_MAGBIO Magnolia biondii HOM05D000007 ORTHO05D007252 5.0e-08 63.2 245 25.7
vmacro05613 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 5.0e-08 63.2 350 22.6
Potri.001G458400 Populus trichocarpa HOM05D000007 ORTHO05D000101 6.5e-08 62.8 251 25.5
Prupe.4G237500 Prunus persica HOM05D000007 ORTHO05D005026 6.5e-08 62.8 242 24.8
RcHm_v2.0_Chr2g0090931 Rosa chinensis HOM05D000007 ORTHO05D005026 6.5e-08 62.8 258 25.6
SalBow1G7289 Salvia bowleyana HOM05D000007 ORTHO05D000017 6.5e-08 62.8 243 27.2
Sed0002351 Sechium edule HOM05D000007 ORTHO05D000039 8.5e-08 62.4 249 24.9
SGA_v2.0_scaffold31G12737 Striga asiatica HOM05D000007 ORTHO05D007252 8.5e-08 62.4 324 22.2
AUR62012379 Chenopodium quinoa HOM05D031416 ORTHO05D007252 1.5e-07 61.6 306 25.2
Haze_12717 Corylus avellana HOM05D000007 ORTHO05D000039 1.5e-07 61.6 193 30.1
FvH4_5g33960 Fragaria vesca HOM05D000007 ORTHO05D000039 1.5e-07 61.6 352 24.4
FAN08G3168 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.5e-07 61.6 352 24.4
FAN18G4160 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.5e-07 61.6 352 24.4
Gohir.A09G096401 Gossypium hirsutum HOM05D001729 ORTHO05D001155 1.9e-07 61.2 246 25.6
Lsat_1_v5_gn_4_143560 Lactuca sativa HOM05D000007 ORTHO05D000017 1.9e-07 61.2 253 27.7
HanXRQChr01g0030881 Helianthus annuus HOM05D000007 ORTHO05D012101 2.5e-07 60.8 250 27.2
TAR374G0551 Trochodendron aralioides HOM05D000007 ORTHO05D007252 2.5e-07 60.8 324 22.8
Gorai.006G112800 Gossypium raimondii HOM05D001729 ORTHO05D001155 3.2e-07 60.5 246 25.6
PSO017G3147 Papaver somniferum HOM05D000007 ORTHO05D000676 3.2e-07 60.5 358 22.1
QL04p019537 Quercus lobata HOM05D000007 ORTHO05D000039 3.2e-07 60.5 186 26.9
Aqoxy3G04097 Aquilegia oxysepala HOM05D000007 ORTHO05D000676 4.2e-07 60.1 324 25.6
Gohir.D09G096101 Gossypium hirsutum HOM05D001729 ORTHO05D001155 4.2e-07 60.1 246 25.6
MSTRG.5952 Avicennia marina HOM05D000007 ORTHO05D007252 5.5e-07 59.7 329 21.6
FAN04G2450 Fragaria x ananassa HOM05D000007 ORTHO05D000039 5.5e-07 59.7 352 24.4
Os09g0449600 Oryza sativa ssp. japonica HOM05D000007 ORTHO05D000017 7.2e-07 59.3 250 24.0
PSO017G2047 Papaver somniferum HOM05D000007 ORTHO05D000676 7.2e-07 59.3 358 22.1
Sabra16G0310700 Salix brachista HOM05D000007 ORTHO05D000101 7.2e-07 59.3 248 23.8
MBI19_g00242_MAGBIO Magnolia biondii HOM05D000007 ORTHO05D007252 9.4e-07 58.9 184 28.3
Dinv36838 Davidia involucrata HOM05D001394 ORTHO05D001237 1.2e-06 58.5 331 24.2
FvH4_6g06680 Fragaria vesca HOM05D000007 ORTHO05D000039 1.2e-06 58.5 363 22.9
Os09g0447600 Oryza sativa ssp. japonica HOM05D000007 ORTHO05D000039 1.2e-06 58.5 238 25.2
QL05p054335 Quercus lobata HOM05D000007 ORTHO05D003666 1.2e-06 58.5 331 24.2
TAR371G0740 Trochodendron aralioides HOM05D000007 ORTHO05D000017 1.2e-06 58.5 182 28.0
HanXRQChr03g0066051 Helianthus annuus HOM05D000007 ORTHO05D000017 1.6e-06 58.2 227 25.1
QL04p029261 Quercus lobata HOM05D000007 ORTHO05D000039 1.6e-06 58.2 253 26.9
RcHm_v2.0_Chr2g0164001 Rosa chinensis HOM05D003981 ORTHO05D003666 1.6e-06 58.2 344 27.0
Solyc01g008660.4 Solanum lycopersicum HOM05D000007 ORTHO05D000017 1.6e-06 58.2 253 26.1
Nitab4.5_0007469g0010 Nicotiana tabacum HOM05D000007 ORTHO05D007252 2.1e-06 57.8 317 23.7
Peaxi162Scf00231g00028 Petunia axillaris HOM05D000007 ORTHO05D000017 2.1e-06 57.8 258 24.8
PSO170G3990 Papaver somniferum HOM05D000007 ORTHO05D000676 2.7e-06 57.4 284 25.7
Manes.12G062501 Manihot esculenta HOM05D000007 ORTHO05D000521 3.6e-06 57.0 343 22.7
Manes.12G062601 Manihot esculenta HOM05D000007 ORTHO05D000521 3.6e-06 57.0 343 22.7
Sopen01g004180 Solanum pennellii HOM05D000007 ORTHO05D000017 3.6e-06 57.0 253 25.7
Peaxi162Scf00231g00250 Petunia axillaris HOM05D000007 ORTHO05D000017 4.7e-06 56.6 247 23.9
Psat6g012160 Pisum sativum HOM05D000007 ORTHO05D000017 4.7e-06 56.6 186 29.0
HanXRQChr03g0066081 Helianthus annuus HOM05D000007 ORTHO05D000017 6.1e-06 56.2 311 23.8
Nn2g13281 Nelumbo nucifera HOM05D000007 ORTHO05D000017 6.1e-06 56.2 327 24.5
Peaxi162Scf00231g00249 Petunia axillaris HOM05D000007 ORTHO05D000017 6.1e-06 56.2 258 25.6
Sp1g37770 Schrenkiella parvula HOM05D000171 ORTHO05D000101 8.0e-06 55.8 198 24.2


User provided reference genes

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