Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR069140 Cardamine hirsuta HOM05D010473 ORTHO05D007577 5.8e-298 1026.9 569 100.0
AL2G35720 Arabidopsis lyrata HOM05D010473 ORTHO05D007577 4.9e-196 688.3 606 74.1
AT1G75730 Arabidopsis thaliana HOM05D010473 ORTHO05D007577 1.9e-192 676.4 606 69.5
Sp5g30850 Schrenkiella parvula HOM05D010473 ORTHO05D007577 1.4e-190 670.2 603 67.3
Thhalv10018322m.g Eutrema salsugineum HOM05D010473 ORTHO05D007577 3.3e-184 649.0 612 66.3
Carub.0002s2258 Capsella rubella HOM05D010473 ORTHO05D007577 9.5e-184 647.5 614 70.4
BcaC03g15618 Brassica carinata HOM05D010473 ORTHO05D007577 4.9e-140 502.3 628 58.0
C02p33740 Brassica napus HOM05D010473 ORTHO05D007577 4.9e-140 502.3 622 58.8
BraA07t31661Z Brassica rapa HOM05D010473 ORTHO05D007577 1.1e-136 491.1 595 58.3
A02p20200 Brassica napus HOM05D010473 ORTHO05D007577 5.6e-136 488.8 567 61.2
BolC2t09331H Brassica oleracea HOM05D010473 ORTHO05D007577 3.2e-131 473.0 573 59.0
A07p41260 Brassica napus HOM05D010473 ORTHO05D007577 4.6e-130 469.2 576 59.4
BcaB05g24937 Brassica carinata HOM05D010473 ORTHO05D007577 1.1e-126 458.0 616 53.7
BraA02t07054Z Brassica rapa HOM05D010473 ORTHO05D007577 5.3e-126 455.7 575 58.1
C06p49680 Brassica napus HOM05D010473 ORTHO05D007577 2.3e-121 440.3 529 58.0
BolC6t40007H Brassica oleracea HOM05D010473 ORTHO05D007577 3.1e-118 429.9 546 56.2
Aa31LG4G5960 Aethionema arabicum HOM05D010473 ORTHO05D007577 9.7e-96 355.1 658 44.5
BcaC03g15614 Brassica carinata HOM05D010473 ORTHO05D007577 1.0e-84 318.5 509 48.3
THA.LOC104814031 Tarenaya hassleriana HOM05D010473 ORTHO05D007577 3.6e-66 256.9 602 42.2
BcaC08g47058 Brassica carinata HOM05D010473 ORTHO05D007577 3.5e-37 160.6 253 53.8
BcaC08g47047 Brassica carinata HOM05D010473 ORTHO05D007577 4.6e-37 160.2 134 79.1
Prupe.1G365800 Prunus persica HOM05D007378 ORTHO05D007577 2.1e-29 134.8 755 30.1
Thecc.08G043900 Theobroma cacao HOM05D007378 ORTHO05D007577 4.9e-23 113.6 690 26.7
Potri.005G238800 Populus trichocarpa HOM05D007378 ORTHO05D007577 1.4e-22 112.1 686 26.8
MD15G1012700 Malus domestica HOM05D007378 ORTHO05D007577 2.1e-21 108.2 619 29.7
Ciclev10000382m.g Citrus clementina HOM05D007378 ORTHO05D007577 3.9e-20 104.0 637 27.8
MD08G1013300 Malus domestica HOM05D007378 ORTHO05D007577 1.1e-19 102.4 608 29.1
Actinidia16984 Actinidia chinensis HOM05D007378 ORTHO05D007577 3.7e-18 97.4 596 27.7
PGSC0003DMG400009935 Solanum tuberosum HOM05D007378 ORTHO05D007577 3.7e-18 97.4 510 28.4
Solyc04g081420.4 Solanum lycopersicum HOM05D007378 ORTHO05D007577 4.8e-18 97.1 527 27.9
Potri.002G022800 Populus trichocarpa HOM05D007378 ORTHO05D007577 6.2e-18 96.7 672 26.5
Ca_15483_v3 Cicer arietinum L. HOM05D007378 ORTHO05D007577 1.1e-17 95.9 488 28.7
Sabra05G0184500 Salix brachista HOM05D007378 ORTHO05D007577 1.8e-17 95.1 670 25.2
DCAR_013867 Daucus carota HOM05D007378 ORTHO05D007577 6.9e-17 93.2 597 28.8
Cfa013945 Carpinus fangiana HOM05D007378 ORTHO05D007577 9.0e-17 92.8 704 26.3
QL02p011519 Quercus lobata HOM05D007378 ORTHO05D007577 2.0e-16 91.7 733 24.4
Duzib116G0067 Durio zibethinus HOM05D007378 ORTHO05D007577 3.4e-16 90.9 599 27.0
GSVIVG01009901001 Vitis vinifera HOM05D007378 ORTHO05D007577 4.5e-16 90.5 549 26.0
CAN.G311.27 Capsicum annuum HOM05D007378 ORTHO05D007577 5.8e-16 90.1 508 28.3
Sopen04g035030 Solanum pennellii HOM05D007378 ORTHO05D007577 5.8e-16 90.1 538 28.3
CiPaw.07G150400 Carya illinoinensis HOM05D007378 ORTHO05D007577 1.7e-15 88.6 626 26.5
Manes.05G147800 Manihot esculenta HOM05D007378 ORTHO05D007577 2.9e-15 87.8 657 26.5
Duzib093G0923 Durio zibethinus HOM05D007378 ORTHO05D007577 3.8e-15 87.4 709 26.4
Peaxi162Scf00438g00718 Petunia axillaris HOM05D007378 ORTHO05D007577 3.8e-15 87.4 320 29.4
Haze_22630 Corylus avellana HOM05D007378 ORTHO05D007577 1.4e-14 85.5 719 25.6
Nitab4.5_0002561g0040 Nicotiana tabacum HOM05D007378 ORTHO05D007577 1.9e-14 85.1 327 28.7
CSS0021578 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 4.2e-14 84.0 760 24.7
TPR.G34540 Trifolium pratense HOM05D007378 ORTHO05D007577 4.2e-14 84.0 332 29.2
COL.COLO4_26152 Corchorus olitorius HOM05D007378 ORTHO05D007577 9.3e-14 82.8 565 26.5
Actinidia15419 Actinidia chinensis HOM05D007378 ORTHO05D007577 2.1e-13 81.6 575 27.0
Sabra02G0018600 Salix brachista HOM05D007378 ORTHO05D007577 2.1e-13 81.6 690 26.1
Cpa.g.sc26.38 Carica papaya HOM05D007378 ORTHO05D007577 2.7e-13 81.3 712 26.0
Lalb_Chr11g0061931 Lupinus albus HOM05D007378 ORTHO05D007577 2.7e-13 81.3 474 29.3
Lj1g0027004 Lotus japonicus HOM05D007378 ORTHO05D007577 3.5e-13 80.9 472 29.4
Hund05208 Selenicereus undatus HOM05D007378 ORTHO05D007577 3.5e-13 80.9 449 28.5
Dinv31841 Davidia involucrata HOM05D007378 ORTHO05D007577 1.0e-12 79.3 646 25.4
CANSAT25G3202 Cannabis sativa HOM05D007378 ORTHO05D007577 3.9e-12 77.4 694 25.1
Manes.18G013740 Manihot esculenta HOM05D007378 ORTHO05D007577 6.7e-12 76.6 524 27.1
TAR381G0696 Trochodendron aralioides HOM05D007378 ORTHO05D007577 1.1e-11 75.9 543 27.3
Hma1.2p1_0023F.1_g015450 Hydrangea macrophylla HOM05D007378 ORTHO05D007577 1.5e-11 75.5 697 23.8
Migut.C00828 Erythranthe guttata HOM05D007378 ORTHO05D007577 2.5e-11 74.7 448 28.1
CSS0029124 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 3.3e-11 74.3 160 41.2
Medtr3g113840 Medicago truncatula HOM05D007378 ORTHO05D007577 5.7e-11 73.6 392 30.4
Glyma.17G258000 Glycine max HOM05D007378 ORTHO05D007577 7.4e-11 73.2 337 29.4
Glyma.14G219000 Glycine max HOM05D007378 ORTHO05D007577 1.3e-10 72.4 438 26.5
MSTRG.25246 Avicennia marina HOM05D007378 ORTHO05D007577 2.2e-10 71.6 530 25.1
CiPaw.08G066200 Carya illinoinensis HOM05D007378 ORTHO05D007577 3.7e-10 70.9 158 38.0
Duzib041G0240 Durio zibethinus HOM05D007378 ORTHO05D007577 3.7e-10 70.9 202 36.1
Atru.chr13.296 Acer truncatum HOM05D007378 ORTHO05D007577 4.8e-10 70.5 472 28.4
VMungo1309G2950 Vigna mungo HOM05D007378 ORTHO05D007577 6.3e-10 70.1 495 26.3
RcHm_v2.0_Chr6g0302801 Rosa chinensis HOM05D007378 ORTHO05D007577 2.4e-09 68.2 625 25.0
Glyma.04G024500 Glycine max HOM05D007378 ORTHO05D007577 4.1e-09 67.4 232 34.5
Lj5g0002996 Lotus japonicus HOM05D007378 ORTHO05D007577 6.9e-09 66.6 542 27.1
CSS0024961 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 1.2e-08 65.9 188 36.7
FvH4_2g38520 Fragaria vesca HOM05D007378 ORTHO05D007577 2.0e-08 65.1 558 26.5
FAN20G0665 Fragaria x ananassa HOM05D007378 ORTHO05D007577 2.6e-08 64.7 558 25.4
arahy.Tifrunner.gnm1.ann1.WP2VUZ Arachis hypogaea HOM05D007378 ORTHO05D007577 3.4e-08 64.3 405 27.2
CSS0010969 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 5.9e-08 63.5 382 26.7
Psat5g013200 Pisum sativum HOM05D007378 ORTHO05D007577 7.7e-08 63.2 484 25.6
Aqoxy5G01785 Aquilegia oxysepala HOM05D007378 ORTHO05D007577 1.0e-07 62.8 607 24.4
TWI56G0017 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 1.0e-07 62.8 183 39.3
Glyma.06G024600 Glycine max HOM05D007378 ORTHO05D007577 1.3e-07 62.4 232 34.5
Nn5g30152 Nelumbo nucifera HOM05D007378 ORTHO05D007577 2.2e-07 61.6 455 27.5
PSO700G0360 Papaver somniferum HOM05D007378 ORTHO05D007577 2.9e-07 61.2 145 38.6
TWI12G0183 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 2.9e-07 61.2 190 37.4
Ca_13427_v3 Cicer arietinum L. HOM05D007378 ORTHO05D007577 8.5e-07 59.7 540 25.9
PGR031G0679 Punica granatum HOM05D007378 ORTHO05D007577 1.1e-06 59.3 172 36.6
TPR.G26373 Trifolium pratense HOM05D007378 ORTHO05D007577 1.4e-06 58.9 400 27.8
TAR625G0788 Trochodendron aralioides HOM05D000628 ORTHO05D001121 1.4e-06 58.9 147 35.4
Sc15g0005020 Simmondsia chinensis HOM05D007378 ORTHO05D007577 1.9e-06 58.5 165 35.8
vmacro21724 Vaccinium macrocarpon HOM05D007378 ORTHO05D007577 3.2e-06 57.8 445 26.3
Medtr1g025180 Medicago truncatula HOM05D007378 ORTHO05D007577 4.2e-06 57.4 118 41.5
arahy.Tifrunner.gnm1.ann1.KUKA7T Arachis hypogaea HOM05D007378 ORTHO05D007577 5.5e-06 57.0 408 26.5
Eucgr.F00598 Eucalyptus grandis HOM05D007378 ORTHO05D007577 5.5e-06 57.0 617 24.6
TWI36G1616 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 5.5e-06 57.0 347 26.5
Phvul.009G016700 Phaseolus vulgaris HOM05D007378 ORTHO05D007577 7.2e-06 56.6 186 34.9
FAN27G0575 Fragaria x ananassa HOM05D007378 ORTHO05D007577 9.4e-06 56.2 546 26.0


User provided reference genes

Program Settings