Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR069090 Cardamine hirsuta HOM05D007166 ORTHO05D009039 3.3e-70 268.5 155 100.0
AT1G75690 Arabidopsis thaliana HOM05D007166 ORTHO05D009039 2.0e-67 259.2 155 96.8
Carub.0002s2253 Capsella rubella HOM05D007166 ORTHO05D009039 1.9e-65 252.7 156 94.9
Thhalv10019268m.g Eutrema salsugineum HOM05D007166 ORTHO05D009039 7.8e-64 247.3 158 93.0
AL2G35670 Arabidopsis lyrata HOM05D007166 ORTHO05D009039 2.3e-63 245.7 156 94.9
BcaC08g47053 Brassica carinata HOM05D007166 ORTHO05D009039 4.7e-61 238.0 159 89.9
Sp5g30800 Schrenkiella parvula HOM05D007166 ORTHO05D009039 8.1e-61 237.3 158 90.5
Aa31LG4G5920 Aethionema arabicum HOM05D007166 ORTHO05D009039 2.6e-59 232.3 159 88.1
THA.LOC104813791 Tarenaya hassleriana HOM05D007166 ORTHO05D009039 1.7e-58 229.6 163 84.7
BraA07t31656Z Brassica rapa HOM05D007166 ORTHO05D009039 3.7e-58 228.4 152 90.1
BolC6t40002H Brassica oleracea HOM05D007166 ORTHO05D009039 1.1e-57 226.9 152 89.5
BcaC03g15610 Brassica carinata HOM05D007166 ORTHO05D009039 2.4e-57 225.7 155 87.7
A07p41210 Brassica napus HOM05D007166 ORTHO05D009039 9.2e-57 223.8 153 89.5
C06p49630 Brassica napus HOM05D007166 ORTHO05D009039 1.6e-56 223.0 152 88.8
BraA02t07050Z Brassica rapa HOM05D007166 ORTHO05D009039 1.2e-53 213.4 148 86.5
C02p33780 Brassica napus HOM05D007166 ORTHO05D009039 1.6e-53 213.0 148 86.5
A02p20150 Brassica napus HOM05D007166 ORTHO05D009039 3.6e-53 211.8 148 85.8
BolC2t09326H Brassica oleracea HOM05D007166 ORTHO05D009039 3.6e-53 211.8 148 86.5
CiPaw.08G065500 Carya illinoinensis HOM05D007166 ORTHO05D009039 1.9e-46 189.5 157 76.4
PGR031G2037 Punica granatum HOM05D007166 ORTHO05D009039 4.3e-46 188.3 160 73.1
Peaxi162Scf00438g00619 Petunia axillaris HOM05D007166 ORTHO05D009039 1.6e-45 186.4 154 72.7
Dinv31833 Davidia involucrata HOM05D007166 ORTHO05D009039 2.8e-45 185.7 157 76.4
Duzib116G0210 Durio zibethinus HOM05D007166 ORTHO05D009039 4.8e-45 184.9 157 75.2
MD15G1013500 Malus domestica HOM05D007166 ORTHO05D009039 4.8e-45 184.9 159 76.1
Haze_22621 Corylus avellana HOM05D007166 ORTHO05D009039 6.2e-45 184.5 158 75.3
CAN.G311.15 Capsicum annuum HOM05D007166 ORTHO05D009039 1.1e-44 183.7 154 74.7
CsaV3_3G045770 Cucumis sativus L. HOM05D007166 ORTHO05D009039 1.4e-44 183.3 157 75.2
Glyma.17G257400 Glycine max HOM05D007166 ORTHO05D009039 1.8e-44 183.0 158 74.1
Glyma.14G218200 Glycine max HOM05D007166 ORTHO05D009039 5.3e-44 181.4 158 72.2
MELO3C003759.2 Cucumis melo HOM05D007166 ORTHO05D009039 6.9e-44 181.0 157 75.2
Sed0018016 Sechium edule HOM05D007166 ORTHO05D009039 9.0e-44 180.6 160 71.2
VMungo0647G2551 Vigna mungo HOM05D007166 ORTHO05D009039 9.0e-44 180.6 150 75.3
GSVIVG01009888001 Vitis vinifera HOM05D007166 ORTHO05D009039 9.0e-44 180.6 157 73.9
QL02p011380 Quercus lobata HOM05D007166 ORTHO05D009039 2.0e-43 179.5 157 73.2
MSTRG.1201 Avicennia marina HOM05D007166 ORTHO05D009039 9.9e-43 177.2 158 72.2
Medtr1g024840 Medicago truncatula HOM05D007166 ORTHO05D009039 9.9e-43 177.2 151 74.8
Thecc.08G042800 Theobroma cacao HOM05D007166 ORTHO05D009039 9.9e-43 177.2 155 72.3
Cc10_g01790 Coffea canephora HOM05D007166 ORTHO05D009039 1.3e-42 176.8 157 72.6
Eucgr.F00601 Eucalyptus grandis HOM05D007166 ORTHO05D009039 1.3e-42 176.8 157 71.3
HanXRQChr05g0146521 Helianthus annuus HOM05D007166 ORTHO05D009039 1.3e-42 176.8 153 72.5
Lalb_Chr22g0354371 Lupinus albus HOM05D007166 ORTHO05D009039 1.3e-42 176.8 151 74.2
Prupe.1G367000 Prunus persica HOM05D007166 ORTHO05D009039 1.7e-42 176.4 159 73.0
Sabra02G0019200 Salix brachista HOM05D007166 ORTHO05D009039 2.2e-42 176.0 162 71.0
Potri.002G023600 Populus trichocarpa HOM05D007166 ORTHO05D009039 2.9e-42 175.6 162 71.6
CANSAT25G3739 Cannabis sativa HOM05D007166 ORTHO05D009039 4.9e-42 174.9 163 68.1
Gorai.010G005000 Gossypium raimondii HOM05D007166 ORTHO05D009039 8.4e-42 174.1 154 72.1
CSS0019896 Camellia sinensis var. sinensis HOM05D007166 ORTHO05D009039 1.1e-41 173.7 149 77.9
Gohir.D06G000600 Gossypium hirsutum HOM05D007166 ORTHO05D009039 1.4e-41 173.3 154 72.1
Solyc04g081320.4 Solanum lycopersicum HOM05D007166 ORTHO05D009039 1.4e-41 173.3 159 69.8
Sopen04g034940 Solanum pennellii HOM05D007166 ORTHO05D009039 1.4e-41 173.3 159 69.8
Phvul.001G007500 Phaseolus vulgaris HOM05D007166 ORTHO05D009039 2.4e-41 172.6 150 72.7
TWI56G1425 Tripterygium wilfordii HOM05D007166 ORTHO05D009039 3.2e-41 172.2 148 75.7
Gohir.A06G004800 Gossypium hirsutum HOM05D007166 ORTHO05D009039 4.2e-41 171.8 154 71.4
MD08G1014000 Malus domestica HOM05D007166 ORTHO05D009039 4.2e-41 171.8 152 75.0
RcHm_v2.0_Chr6g0302691 Rosa chinensis HOM05D007166 ORTHO05D009039 5.4e-41 171.4 154 72.1
Migut.C00807 Erythranthe guttata HOM05D007166 ORTHO05D009039 7.1e-41 171.0 159 69.8
Atru.chr13.311 Acer truncatum HOM05D007166 ORTHO05D009039 9.3e-41 170.6 162 67.9
COL.COLO4_26159 Corchorus olitorius HOM05D007166 ORTHO05D009039 9.3e-41 170.6 159 67.3
Duzib093G1587 Durio zibethinus HOM05D007166 ORTHO05D009039 2.7e-40 169.1 155 71.6
ClCG05G018350 Citrullus lanatus HOM05D007166 ORTHO05D009039 3.5e-40 168.7 149 73.2
DCAR_017474 Daucus carota HOM05D007166 ORTHO05D009039 3.5e-40 168.7 161 72.0
PSO170G1901 Papaver somniferum HOM05D007166 ORTHO05D009039 3.5e-40 168.7 148 72.3
Lsat_1_v5_gn_9_46261 Lactuca sativa HOM05D007166 ORTHO05D009039 6.0e-40 167.9 160 69.4
Oeu007334.1 Olea europaea HOM05D007166 ORTHO05D009039 6.0e-40 167.9 158 67.1
TPR.G34359 Trifolium pratense HOM05D007166 ORTHO05D009039 7.8e-40 167.5 152 72.4
PSO700G0103 Papaver somniferum HOM05D007166 ORTHO05D009039 1.3e-39 166.8 147 72.8
BcaB05g24933 Brassica carinata HOM05D007166 ORTHO05D009039 2.3e-39 166.0 145 64.8
Os03g0244000 Oryza sativa ssp. japonica HOM05D007166 ORTHO05D009039 3.0e-39 165.6 140 74.3
Rhsim06G0022200 Rhododendron simsii HOM05D007166 ORTHO05D009039 3.0e-39 165.6 146 69.9
FAN20G1945 Fragaria x ananassa HOM05D007166 ORTHO05D009039 3.9e-39 165.2 166 69.9
Potri.005G237800 Populus trichocarpa HOM05D007166 ORTHO05D009039 6.6e-39 164.5 163 67.5
ECA232G5036 Erigeron canadensis HOM05D007166 ORTHO05D009039 8.7e-39 164.1 127 79.5
Nn5g29333 Nelumbo nucifera HOM05D007166 ORTHO05D009039 8.7e-39 164.1 152 71.7
Lj4A797T62 Lonicera japonica HOM05D007166 ORTHO05D009039 1.1e-38 163.7 160 68.8
unitig_46.g17964 Utricularia gibba HOM05D007166 ORTHO05D009039 1.9e-38 162.9 158 67.1
FvH4_2g38630 Fragaria vesca HOM05D007166 ORTHO05D009039 2.5e-38 162.5 148 74.3
TAR628G0810 Trochodendron aralioides HOM05D007166 ORTHO05D009039 4.3e-38 161.8 147 73.5
HPP92_015209 Vanilla planifolia HOM05D007166 ORTHO05D009039 1.3e-37 160.2 156 67.3
arahy.Tifrunner.gnm1.ann1.74SAHL Arachis hypogaea HOM05D007166 ORTHO05D009039 2.1e-37 159.5 145 71.7
Manes.18G014600 Manihot esculenta HOM05D007166 ORTHO05D009039 2.1e-37 159.5 159 69.8
SGA_v2.0_scaffold92G28245 Striga asiatica HOM05D007166 ORTHO05D009039 2.1e-37 159.5 142 71.1
Actinidia15414 Actinidia chinensis HOM05D007166 ORTHO05D009039 6.2e-37 157.9 150 67.3
FAN15G1492 Fragaria x ananassa HOM05D007166 ORTHO05D009039 1.4e-36 156.8 194 60.3
PGSC0003DMG400003776 Solanum tuberosum HOM05D007166 ORTHO05D009039 3.1e-36 155.6 192 47.4
EL10Ac5g11627 Beta vulgaris HOM05D007166 ORTHO05D009039 5.3e-36 154.8 156 67.9
Lj5g0017261 Lotus japonicus HOM05D007166 ORTHO05D009039 6.9e-36 154.5 188 57.4
Zm00001eb081060 Zea mays HOM05D007166 ORTHO05D009039 4.5e-35 151.8 156 66.7
CDE02G4515 Ceratophyllum demersum HOM05D007166 ORTHO05D009039 2.9e-34 149.1 118 78.8
AagrBONN_evm.TU.Sc2ySwM_369.321 Anthoceros agrestis HOM05D007166 ORTHO05D009039 1.2e-32 143.7 111 75.7
Mapoly0005s0157 Marchantia polymorpha HOM05D007166 ORTHO05D009039 1.2e-32 143.7 134 67.9
Pp3s104_40 Physcomitrium patens HOM05D007166 ORTHO05D009039 1.0e-31 140.6 111 74.8
Pp3c22_16100 Physcomitrium patens HOM05D007166 ORTHO05D009039 3.0e-31 139.0 155 58.1
SMO165G0060 Selaginella moellendorffii HOM05D007166 ORTHO05D009039 1.4e-28 130.2 138 63.0
Ciclev10002412m.g Citrus clementina HOM05D007166 ORTHO05D009039 4.0e-28 128.6 168 49.4
AUR62036485 Chenopodium quinoa HOM05D007166 ORTHO05D009039 2.9e-26 122.5 151 62.3
CBR_g44435 Chara braunii HOM05D007166 ORTHO05D009039 1.9e-25 119.8 128 60.9
Cpa.g.sc1059.4 Carica papaya HOM05D007166 ORTHO05D009039 3.2e-25 119.0 101 64.4
Cfa013938 Carpinus fangiana HOM05D007166 ORTHO05D009039 9.3e-25 117.5 183 43.7
AUR62037091 Chenopodium quinoa HOM05D007166 ORTHO05D009039 9.3e-25 117.5 123 57.7
CDE02G3586 Ceratophyllum demersum HOM05D007166 ORTHO05D009039 2.1e-24 116.3 68 79.4
Nitab4.5_0001540g0050 Nicotiana tabacum HOM05D007166 ORTHO05D009039 1.8e-23 113.2 154 47.4
HPP92_015221 Vanilla planifolia HOM05D007166 ORTHO05D009039 1.1e-20 104.0 96 58.3
arahy.Tifrunner.gnm1.ann1.MS74EG Arachis hypogaea HOM05D007166 ORTHO05D009039 2.5e-17 92.8 161 41.6
Aqoxy5G01769 Aquilegia oxysepala HOM05D007166 ORTHO05D009039 2.7e-16 89.4 87 49.4
Hund05201 Selenicereus undatus HOM05D007166 ORTHO05D009039 2.4e-12 76.3 58 67.2
ATR0912G003 Amborella trichopoda HOM05D007166 ORTHO05D009039 1.1e-09 67.4 60 53.3
Thecc.09G255600 Theobroma cacao HOM05D007166 ORTHO05D009039 1.9e-09 66.6 95 45.3
MBI09_g08444_MAGBIO Magnolia biondii HOM05D007166 ORTHO05D009039 1.0e-07 60.8 96 37.5
EL10Ac4g08279 Beta vulgaris HOM05D007166 ORTHO05D009039 2.0e-06 56.6 67 52.2


User provided reference genes

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