Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 1.3e-108 396.4 197 100.0
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 9.5e-99 363.6 197 91.9
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 4.0e-97 358.2 197 88.8
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 4.4e-96 354.8 197 89.3
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 4.1e-94 348.2 197 85.3
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 9.5e-91 337.0 197 83.8
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 6.8e-89 330.9 195 82.6
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 1.1e-86 323.6 198 81.3
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 1.1e-86 323.6 198 81.3
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 1.9e-86 322.8 194 78.4
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 1.2e-85 320.1 198 80.3
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 9.5e-83 310.5 187 80.7
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 1.6e-82 309.7 199 76.9
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 3.6e-82 308.5 187 80.2
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 2.1e-69 266.2 162 84.0
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 5.1e-68 261.5 194 61.9
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 2.8e-66 255.8 194 60.8
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 3.6e-66 255.4 194 61.3
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 6.2e-66 254.6 194 60.8
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 1.8e-65 253.1 194 58.8
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 5.3e-65 251.5 192 62.0
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 9.0e-65 250.8 193 60.1
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 1.2e-64 250.4 187 61.0
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.2e-64 250.4 187 61.5
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 1.5e-64 250.0 187 60.4
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.5e-64 250.0 187 61.5
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.5e-64 250.0 187 61.5
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 2.0e-64 249.6 187 61.5
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 3.4e-64 248.8 194 58.8
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 4.4e-64 248.4 194 59.3
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 9.9e-64 247.3 195 60.0
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 9.9e-64 247.3 187 62.0
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 1.7e-63 246.5 177 65.5
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 2.2e-63 246.1 194 58.8
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 2.2e-63 246.1 195 60.0
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 2.9e-63 245.7 196 58.2
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 2.9e-63 245.7 194 58.8
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 2.9e-63 245.7 187 61.0
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 8.4e-63 244.2 194 59.8
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 1.1e-62 243.8 194 59.8
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 1.4e-62 243.4 194 58.2
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 1.9e-62 243.0 194 58.8
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 1.9e-62 243.0 184 59.2
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 3.2e-62 242.3 187 59.9
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 4.2e-62 241.9 194 57.7
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 4.2e-62 241.9 195 57.9
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 5.4e-62 241.5 195 61.0
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 5.4e-62 241.5 194 57.2
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 1.2e-61 240.4 194 56.2
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 1.2e-61 240.4 182 61.5
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 2.7e-61 239.2 187 58.8
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 4.6e-61 238.4 184 59.2
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 4.6e-61 238.4 192 57.3
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 4.6e-61 238.4 195 56.4
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 6.0e-61 238.0 194 57.2
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 7.8e-61 237.7 195 57.4
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 7.8e-61 237.7 184 59.2
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 1.3e-60 236.9 194 55.7
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 1.3e-60 236.9 192 58.9
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 1.3e-60 236.9 193 58.5
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 1.3e-60 236.9 194 55.7
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 1.3e-60 236.9 192 57.8
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 1.7e-60 236.5 194 57.7
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 3.9e-60 235.3 194 56.7
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 5.1e-60 235.0 187 59.4
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 6.6e-60 234.6 195 56.4
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 1.1e-59 233.8 195 57.4
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 1.5e-59 233.4 195 56.4
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 3.3e-59 232.3 192 54.7
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 3.3e-59 232.3 192 55.2
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 4.3e-59 231.9 193 57.5
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 4.3e-59 231.9 194 54.1
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 4.3e-59 231.9 194 54.1
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 7.3e-59 231.1 195 55.4
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 9.6e-59 230.7 193 53.4
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 9.6e-59 230.7 194 54.6
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 1.3e-58 230.3 194 55.2
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 1.3e-58 230.3 195 55.9
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 3.6e-58 228.8 192 54.7
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 3.6e-58 228.8 192 54.7
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 6.2e-58 228.0 194 54.1
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 8.1e-58 227.6 196 55.1
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 1.8e-57 226.5 194 53.6
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 9.0e-57 224.2 194 54.1
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 1.2e-56 223.8 194 53.6
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 2.0e-56 223.0 194 52.6
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 2.6e-56 222.6 183 55.2
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 4.5e-56 221.9 194 55.2
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 4.5e-56 221.9 194 52.6
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.3e-55 220.3 194 56.7
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 2.2e-55 219.5 194 49.5
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 3.8e-55 218.8 193 53.4
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 4.9e-55 218.4 194 49.5
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 6.4e-55 218.0 176 57.4
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 4.2e-54 215.3 176 56.8
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 7.1e-54 214.5 195 52.3
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 1.2e-53 213.8 214 48.6
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 6.0e-53 211.5 194 52.6
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 7.9e-53 211.1 182 54.4
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 2.3e-52 209.5 183 53.6
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 3.0e-52 209.1 215 49.3
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 8.7e-52 207.6 194 50.5
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 8.7e-52 207.6 194 51.5
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 8.7e-52 207.6 194 51.5
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 1.1e-51 207.2 187 53.5
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 3.3e-51 205.7 183 50.8
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 3.3e-51 205.7 212 47.6
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 4.3e-51 205.3 194 51.0
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.8e-50 202.6 178 53.9
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 1.4e-49 200.3 213 47.4
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 1.4e-49 200.3 212 48.6
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 5.3e-49 198.4 160 56.9
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 6.9e-49 198.0 161 55.3
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.0e-48 196.4 212 47.2
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 5.8e-48 194.9 176 52.8
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.2e-45 187.2 142 61.3
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 2.1e-45 186.4 157 54.1
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 3.5e-45 185.7 156 53.2
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 2.3e-44 183.0 194 47.4
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 1.5e-43 180.3 131 62.6
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 3.3e-43 179.1 184 48.4
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 9.6e-43 177.6 195 44.1
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 3.4e-40 169.1 149 55.0
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 1.0e-39 167.5 198 46.0
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 1.1e-38 164.1 155 52.3
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 7.1e-38 161.4 231 41.6
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 2.3e-36 156.4 219 40.6
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 3.9e-36 155.6 196 41.8
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 1.8e-33 146.7 203 39.4
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 1.2e-32 144.1 208 36.5
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 1.7e-31 140.2 128 52.3
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 5.7e-27 125.2 188 37.2
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 9.7e-27 124.4 184 37.5
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 6.9e-25 118.2 76 78.9
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 2.0e-24 116.7 178 36.0
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 2.1e-21 106.7 116 47.4
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 3.0e-20 102.8 138 40.6
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 9.7e-19 97.8 76 60.5
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 5.3e-17 92.0 84 51.2
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 8.5e-15 84.7 95 43.2
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 2.2e-07 60.1 176 22.7


User provided reference genes

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