Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR068950 Cardamine hirsuta HOM05D008022 ORTHO05D010147 7.3e-54 214.2 155 100.0
A07p41120 Brassica napus HOM05D008022 ORTHO05D010147 2.7e-40 169.1 163 77.9
C06p49540 Brassica napus HOM05D008022 ORTHO05D010147 2.3e-39 166.0 164 76.2
BolC6t39993H Brassica oleracea HOM05D008022 ORTHO05D010147 2.3e-39 166.0 164 76.2
BraA07t31648Z Brassica rapa HOM05D008022 ORTHO05D010147 2.3e-39 166.0 164 76.8
BcaC08g47037 Brassica carinata HOM05D008022 ORTHO05D010147 3.0e-39 165.6 159 74.8
BcaB05g24920 Brassica carinata HOM05D008022 ORTHO05D010147 8.7e-39 164.1 176 77.8
BolC2t09304H Brassica oleracea HOM05D008022 ORTHO05D010147 8.7e-39 164.1 172 72.1
BraA02t07039Z Brassica rapa HOM05D008022 ORTHO05D010147 4.3e-38 161.8 179 71.5
BcaC08g47337 Brassica carinata HOM05D008022 ORTHO05D010147 9.6e-38 160.6 166 74.1
A02p20010 Brassica napus HOM05D008022 ORTHO05D010147 2.8e-37 159.1 186 69.9
AL2G35530 Arabidopsis lyrata HOM05D008022 ORTHO05D010147 3.6e-37 158.7 173 79.2
C02p34060 Brassica napus HOM05D008022 ORTHO05D010147 2.0e-35 152.9 178 74.2
Carub.0002s2241 Capsella rubella HOM05D008022 ORTHO05D010147 7.4e-30 134.4 165 75.8
BcaC08g47338 Brassica carinata HOM05D008022 ORTHO05D010147 3.5e-24 115.5 65 76.9
BcaC08g45567 Brassica carinata HOM05D008022 ORTHO05D010147 1.8e-23 113.2 160 63.1
C06p32520 Brassica napus HOM05D008022 ORTHO05D010147 1.8e-23 113.2 160 63.1
BolC6t38374H Brassica oleracea HOM05D008022 ORTHO05D010147 1.8e-23 113.2 160 63.1
AT1G75550 Arabidopsis thaliana HOM05D008022 ORTHO05D010147 1.9e-22 109.8 150 76.7
BraA07t30517Z Brassica rapa HOM05D008022 ORTHO05D010147 7.4e-22 107.8 158 62.7
EL10Ac1g00558 Beta vulgaris HOM05D008022 ORTHO05D010147 1.3e-13 80.5 49 63.3
Cpa.g.sc140.17 Carica papaya HOM05D008022 ORTHO05D010147 3.1e-12 75.9 47 63.8
ECA236G3926 Erigeron canadensis HOM05D008022 ORTHO05D010147 3.1e-12 75.9 48 58.3
CANSAT25G1466 Cannabis sativa HOM05D008022 ORTHO05D010147 2.0e-11 73.2 47 55.3
TWI12G0111 Tripterygium wilfordii HOM05D008022 ORTHO05D010147 2.6e-11 72.8 45 62.2
CiPaw.08G062600 Carya illinoinensis HOM05D008022 ORTHO05D010147 3.4e-11 72.4 45 60.0
MD15G1017600 Malus domestica HOM05D008022 ORTHO05D010147 5.9e-11 71.6 45 60.0
Potri.005G234601 Populus trichocarpa HOM05D008022 ORTHO05D010147 5.9e-11 71.6 40 65.0
Eucgr.F01845 Eucalyptus grandis HOM05D008022 ORTHO05D010147 7.7e-11 71.2 46 58.7
Lsat_1_v5_gn_7_91921 Lactuca sativa HOM05D008022 ORTHO05D010147 7.7e-11 71.2 47 57.4
CSS0048901 Camellia sinensis var. sinensis HOM05D008022 ORTHO05D010147 1.0e-10 70.9 40 65.0
Atru.chr13.362 Acer truncatum HOM05D008022 ORTHO05D010147 1.3e-10 70.5 46 58.7
Lalb_Chr08g0246011 Lupinus albus HOM05D008022 ORTHO05D010147 1.7e-10 70.1 48 58.3
Manes.05G152650 Manihot esculenta HOM05D008022 ORTHO05D010147 1.7e-10 70.1 50 58.0
Nitab4.5_0000493g0010 Nicotiana tabacum HOM05D008022 ORTHO05D010147 2.2e-10 69.7 40 62.5
CsaV3_7G006070 Cucumis sativus L. HOM05D008022 ORTHO05D010147 3.8e-10 68.9 40 62.5
VMungo1309G0619 Vigna mungo HOM05D002906 ORTHO05D003211 3.8e-10 68.9 45 62.2
PGR031G0261 Punica granatum HOM05D008022 ORTHO05D010147 6.5e-10 68.2 49 55.1
FvH4_2g39010 Fragaria vesca HOM05D008022 ORTHO05D010147 1.1e-09 67.4 40 62.5
arahy.Tifrunner.gnm1.ann1.QUSF5W Arachis hypogaea HOM05D008022 ORTHO05D010147 1.4e-09 67.0 40 62.5
Lj1g0009874 Lotus japonicus HOM05D008022 ORTHO05D010147 1.4e-09 67.0 45 53.3
arahy.Tifrunner.gnm1.ann1.RV6KDM Arachis hypogaea HOM05D008022 ORTHO05D010147 1.9e-09 66.6 49 53.1
CiPaw.07G154400 Carya illinoinensis HOM05D008022 ORTHO05D010147 1.9e-09 66.6 39 61.5
Duzib041G0305 Durio zibethinus HOM05D008022 ORTHO05D010147 1.9e-09 66.6 40 62.5
Phvul.001G009600 Phaseolus vulgaris HOM05D008022 ORTHO05D010147 1.9e-09 66.6 40 60.0
Sed0002960 Sechium edule HOM05D008022 ORTHO05D010147 1.9e-09 66.6 48 50.0
Cc10_g02120 Coffea canephora HOM05D008022 ORTHO05D010147 2.5e-09 66.2 41 61.0
Lalb_Chr22g0354471 Lupinus albus HOM05D008022 ORTHO05D010147 2.5e-09 66.2 45 51.1
Glyma.14G216600 Glycine max HOM05D008022 ORTHO05D010147 4.2e-09 65.5 40 60.0
Gohir.A05G188500 Gossypium hirsutum HOM05D008022 ORTHO05D010147 4.2e-09 65.5 40 60.0
Gohir.D05G191600 Gossypium hirsutum HOM05D008022 ORTHO05D010147 4.2e-09 65.5 40 60.0
Glyma.17G255200 Glycine max HOM05D008022 ORTHO05D010147 5.5e-09 65.1 39 61.5
Medtr1g023270 Medicago truncatula HOM05D008022 ORTHO05D010147 5.5e-09 65.1 45 53.3
Psat6g005360 Pisum sativum HOM05D008022 ORTHO05D010147 5.5e-09 65.1 45 53.3
Gorai.009G196900 Gossypium raimondii HOM05D008022 ORTHO05D010147 7.2e-09 64.7 40 60.0
TPR.G40293 Trifolium pratense HOM05D008022 ORTHO05D010147 7.2e-09 64.7 47 48.9
Medtr3g113080 Medicago truncatula HOM05D008022 ORTHO05D010147 9.4e-09 64.3 45 48.9
Lj5g0000972 Lotus japonicus HOM05D008022 ORTHO05D010147 1.2e-08 63.9 40 57.5
Cfa013902 Carpinus fangiana HOM05D002906 ORTHO05D003211 3.6e-08 62.4 41 58.5
Nn5g29204 Nelumbo nucifera HOM05D008022 ORTHO05D010147 3.6e-08 62.4 40 60.0
Aqoxy6G02393 Aquilegia oxysepala HOM05D008022 ORTHO05D010147 6.1e-08 61.6 41 63.4
arahy.Tifrunner.gnm1.ann1.0AGT2R Arachis hypogaea HOM05D008022 ORTHO05D010147 1.4e-07 60.5 37 56.8
PSO541G2481 Papaver somniferum HOM05D008022 ORTHO05D010147 2.3e-07 59.7 41 61.0
HPP92_017807 Vanilla planifolia HOM05D008022 ORTHO05D010147 2.3e-07 59.7 38 60.5
Sp5g30680 Schrenkiella parvula HOM05D008022 ORTHO05D010147 6.7e-07 58.2 36 86.1
MELO3C018685.2 Cucumis melo HOM05D008022 ORTHO05D010147 2.5e-06 56.2 40 55.0


User provided reference genes

Program Settings