Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR068800 Cardamine hirsuta HOM05D001507 ORTHO05D002108 1.7e-67 259.2 133 100.0
AT1G75400 Arabidopsis thaliana HOM05D001507 ORTHO05D002108 2.2e-46 189.1 121 80.2
Carub.0002s2227 Capsella rubella HOM05D001507 ORTHO05D002108 3.1e-45 185.3 122 79.5
AL2G35350 Arabidopsis lyrata HOM05D001507 ORTHO05D002108 1.5e-44 183.0 121 78.5
Thhalv10018531m.g Eutrema salsugineum HOM05D001507 ORTHO05D002108 2.0e-44 182.6 121 79.3
Sp5g30540 Schrenkiella parvula HOM05D001507 ORTHO05D002108 1.1e-42 176.8 121 76.9
BcaC08g47013 Brassica carinata HOM05D001507 ORTHO05D002108 3.8e-35 151.8 125 72.0
Aa31LG4G5610 Aethionema arabicum HOM05D001507 ORTHO05D002108 1.9e-34 149.4 120 67.5
BolC6t39974H Brassica oleracea HOM05D001507 ORTHO05D002108 5.2e-24 114.8 133 59.4
BraA07t31635Z Brassica rapa HOM05D001507 ORTHO05D002108 6.8e-24 114.4 133 59.4
Carub.0001s1922 Capsella rubella HOM05D001507 ORTHO05D002108 8.8e-24 114.0 132 55.3
A07p40970 Brassica napus HOM05D001507 ORTHO05D002108 9.8e-23 110.5 132 56.8
COL.COLO4_26244 Corchorus olitorius HOM05D001507 ORTHO05D002108 1.7e-22 109.8 114 55.3
C06p49400 Brassica napus HOM05D001507 ORTHO05D002108 8.3e-22 107.5 133 55.6
BcaC08g47357 Brassica carinata HOM05D001507 ORTHO05D002108 1.8e-21 106.3 133 55.6
AL1G32400 Arabidopsis lyrata HOM05D001507 ORTHO05D002108 2.4e-21 105.9 132 53.8
Duzib041G0630 Durio zibethinus HOM05D001507 ORTHO05D002108 1.2e-20 103.6 114 54.4
Duzib116G0230 Durio zibethinus HOM05D001507 ORTHO05D002108 3.5e-20 102.1 114 54.4
CARHR020200 Cardamine hirsuta HOM05D001507 ORTHO05D002108 1.3e-19 100.1 132 50.0
Gorai.009G199100 Gossypium raimondii HOM05D001507 ORTHO05D002108 3.8e-19 98.6 114 51.8
Gohir.A05G190700 Gossypium hirsutum HOM05D001507 ORTHO05D002108 5.0e-19 98.2 114 51.8
AT1G19680 Arabidopsis thaliana HOM05D001507 ORTHO05D002108 5.5e-18 94.7 133 55.6
Glyma.04G029500 Glycine max HOM05D001507 ORTHO05D002108 5.5e-18 94.7 124 47.6
Duzib093G0436 Durio zibethinus HOM05D001507 ORTHO05D002108 2.1e-17 92.8 114 50.9
Glyma.17G253300 Glycine max HOM05D001507 ORTHO05D002108 6.1e-17 91.3 113 49.6
Thecc.08G033300 Theobroma cacao HOM05D001507 ORTHO05D002108 6.1e-17 91.3 99 54.5
Glyma.06G029500 Glycine max HOM05D001507 ORTHO05D002108 8.0e-17 90.9 111 47.7
Lj5g0008104 Lotus japonicus HOM05D001507 ORTHO05D002108 1.8e-16 89.7 107 50.5
RcHm_v2.0_Chr5g0045191 Rosa chinensis HOM05D001507 ORTHO05D002108 2.0e-15 86.3 114 50.9
TWI56G0753 Tripterygium wilfordii HOM05D001507 ORTHO05D002108 2.6e-15 85.9 114 46.5
arahy.Tifrunner.gnm1.ann1.0KG03L Arachis hypogaea HOM05D001507 ORTHO05D002108 4.4e-15 85.1 124 47.6
arahy.Tifrunner.gnm1.ann1.7PY5NM Arachis hypogaea HOM05D001507 ORTHO05D002108 4.4e-15 85.1 124 47.6
Lj1g0003151 Lotus japonicus HOM05D001507 ORTHO05D002108 7.5e-15 84.3 124 46.0
Lalb_Chr22g0354581 Lupinus albus HOM05D001507 ORTHO05D002108 1.7e-14 83.2 113 46.9
Manes.18G021006 Manihot esculenta HOM05D001507 ORTHO05D002108 1.7e-14 83.2 113 45.1
Potri.005G231500 Populus trichocarpa HOM05D001507 ORTHO05D002108 2.2e-14 82.8 113 49.6
FAN01G0417 Fragaria x ananassa HOM05D000619 ORTHO05D002839 2.8e-14 82.4 113 49.6
FAN06G5049 Fragaria x ananassa HOM05D000619 ORTHO05D002839 2.8e-14 82.4 98 55.1
Ciclev10001121m.g Citrus clementina HOM05D001507 ORTHO05D002108 3.7e-14 82.0 113 46.9
MD03G1146100 Malus domestica HOM05D001507 ORTHO05D002108 3.7e-14 82.0 98 55.1
CiPaw.08G060600 Carya illinoinensis HOM05D001507 ORTHO05D002108 4.9e-14 81.6 113 50.4
FAN03G3399 Fragaria x ananassa HOM05D000619 ORTHO05D002839 4.9e-14 81.6 113 50.4
FAN10G4347 Fragaria x ananassa HOM05D000619 ORTHO05D002839 6.3e-14 81.3 97 54.6
Glyma.14G071300 Glycine max HOM05D001507 ORTHO05D002108 6.3e-14 81.3 113 46.9
FvH4_7g07801 Fragaria vesca HOM05D001507 ORTHO05D002108 8.3e-14 80.9 113 49.6
CSS0027579 Camellia sinensis var. sinensis HOM05D001507 ORTHO05D002108 1.1e-13 80.5 98 56.1
TPR.G30489 Trifolium pratense HOM05D001507 ORTHO05D002108 1.8e-13 79.7 113 46.0
VMungo0647G1929 Vigna mungo HOM05D001507 ORTHO05D002108 1.8e-13 79.7 113 45.1
Dinv31786 Davidia involucrata HOM05D001507 ORTHO05D002108 3.2e-13 79.0 132 43.2
Psat5g015600 Pisum sativum HOM05D001507 ORTHO05D002108 3.2e-13 79.0 124 45.2
Potri.002G031600 Populus trichocarpa HOM05D001507 ORTHO05D002108 3.2e-13 79.0 113 48.7
Medtr3g112230 Medicago truncatula HOM05D001507 ORTHO05D002108 4.1e-13 78.6 124 44.4
Gohir.A03G079950 Gossypium hirsutum HOM05D001507 ORTHO05D002108 5.4e-13 78.2 114 43.9
Lalb_Chr14g0369511 Lupinus albus HOM05D001507 ORTHO05D002108 5.4e-13 78.2 100 50.0
GSVIVG01009771001 Vitis vinifera HOM05D001507 ORTHO05D002108 5.4e-13 78.2 111 44.1
Ca_02079_v3 Cicer arietinum L. HOM05D001507 ORTHO05D002108 1.2e-12 77.0 124 44.4
Haze_22554 Corylus avellana HOM05D001507 ORTHO05D002108 1.2e-12 77.0 113 48.7
Psat6g009640 Pisum sativum HOM05D001507 ORTHO05D002108 1.2e-12 77.0 113 45.1
Sabra05G0178700 Salix brachista HOM05D001507 ORTHO05D002108 1.2e-12 77.0 134 44.8
Lalb_Chr24g0398881 Lupinus albus HOM05D001507 ORTHO05D002108 1.6e-12 76.6 111 45.9
Cfa013874 Carpinus fangiana HOM05D001507 ORTHO05D002108 2.0e-12 76.3 113 46.9
Gohir.D02G096100 Gossypium hirsutum HOM05D001507 ORTHO05D002108 2.0e-12 76.3 114 43.0
Gorai.005G109800 Gossypium raimondii HOM05D001507 ORTHO05D002108 2.0e-12 76.3 114 43.0
TPR.G12449 Trifolium pratense HOM05D001507 ORTHO05D002108 2.0e-12 76.3 127 40.9
AUR62034518 Chenopodium quinoa HOM05D001507 ORTHO05D002108 4.5e-12 75.1 118 44.9
Manes.05G155200 Manihot esculenta HOM05D001507 ORTHO05D002108 4.5e-12 75.1 113 44.2
EL10Ac1g00615 Beta vulgaris HOM05D001507 ORTHO05D002108 7.8e-12 74.3 122 45.9
TWI12G0710 Tripterygium wilfordii HOM05D001507 ORTHO05D002108 7.8e-12 74.3 128 41.4
Atru.chr13.411 Acer truncatum HOM05D001507 ORTHO05D002108 1.3e-11 73.6 128 41.4
Sabra02G0025700 Salix brachista HOM05D001507 ORTHO05D002108 3.9e-11 72.0 113 44.2
AUR62014483 Chenopodium quinoa HOM05D001507 ORTHO05D002108 5.0e-11 71.6 111 45.0
QL02p009591 Quercus lobata HOM05D001507 ORTHO05D002108 8.6e-11 70.9 113 46.0
MELO3C023321.2 Cucumis melo HOM05D001507 ORTHO05D002108 1.5e-10 70.1 130 43.1
CiPaw.07G157000 Carya illinoinensis HOM05D001507 ORTHO05D002108 2.5e-10 69.3 113 45.1
CsaV3_2G015010 Cucumis sativus L. HOM05D001507 ORTHO05D002108 2.5e-10 69.3 130 43.1
ClCG11G004160 Citrullus lanatus HOM05D001507 ORTHO05D002108 5.6e-10 68.2 130 41.5
Sed0017187 Sechium edule HOM05D001507 ORTHO05D002108 9.5e-10 67.4 130 43.1
Ah.05g180840 Amaranthus hybridus HOM05D001507 ORTHO05D002108 3.6e-09 65.5 118 43.2
PGR031G0126 Punica granatum HOM05D001507 ORTHO05D002108 3.6e-09 65.5 127 39.4
Sed0002025 Sechium edule HOM05D001507 ORTHO05D002108 3.6e-09 65.5 130 40.8
Aqoxy6G01192 Aquilegia oxysepala HOM05D001507 ORTHO05D002108 4.7e-09 65.1 111 39.6
Phvul.009G060800 Phaseolus vulgaris HOM05D001507 ORTHO05D002108 6.1e-09 64.7 109 36.7
Actinidia37994 Actinidia chinensis HOM05D001507 ORTHO05D002108 1.0e-08 63.9 105 43.8
PSO731G0139 Papaver somniferum HOM05D001507 ORTHO05D002108 1.4e-08 63.5 101 42.6
Rhsim07G0242200 Rhododendron simsii HOM05D001507 ORTHO05D002108 1.8e-08 63.2 86 50.0
Rhsim07G0242800 Rhododendron simsii HOM05D001507 ORTHO05D002108 1.8e-08 63.2 86 50.0
Eucgr.F01862 Eucalyptus grandis HOM05D001507 ORTHO05D002108 2.3e-08 62.8 108 41.7
TAR381G1125 Trochodendron aralioides HOM05D001507 ORTHO05D002108 3.1e-08 62.4 113 40.7
CANSAT11G1577 Cannabis sativa HOM05D001507 ORTHO05D002108 6.8e-08 61.2 126 37.3
vmacro04299 Vaccinium macrocarpon HOM05D001507 ORTHO05D002108 6.8e-08 61.2 85 44.7
vmacro22851 Vaccinium macrocarpon HOM05D001507 ORTHO05D002108 6.8e-08 61.2 85 44.7
Actinidia29809 Actinidia chinensis HOM05D001507 ORTHO05D002108 2.6e-07 59.3 105 42.9
BolC8t51709H Brassica oleracea HOM05D001507 ORTHO05D002108 3.4e-07 58.9 102 40.2
Solyc01g109910.4 Solanum lycopersicum HOM05D001507 ORTHO05D002108 3.4e-07 58.9 112 43.8
A09p58200 Brassica napus HOM05D001507 ORTHO05D002108 4.4e-07 58.5 102 40.2
BraA09t41208Z Brassica rapa HOM05D001507 ORTHO05D002108 4.4e-07 58.5 102 40.2
C08p41480 Brassica napus HOM05D001507 ORTHO05D002108 9.8e-07 57.4 102 39.2
Glyma.04G010000 Glycine max HOM05D001507 ORTHO05D002108 1.3e-06 57.0 111 38.7
SHI08121 Sapria himalayana HOM05D001507 ORTHO05D002108 1.3e-06 57.0 50 56.0
AT4G39140 Arabidopsis thaliana HOM05D001507 ORTHO05D002108 1.7e-06 56.6 139 31.7
Cfa005056 Carpinus fangiana HOM05D001507 ORTHO05D002108 1.7e-06 56.6 114 39.5
DCAR_023013 Daucus carota HOM05D001507 ORTHO05D002108 1.7e-06 56.6 87 46.0
Lalb_Chr19g0132301 Lupinus albus HOM05D001507 ORTHO05D002108 1.7e-06 56.6 111 38.7
Sopen01g052100 Solanum pennellii HOM05D001507 ORTHO05D002108 1.7e-06 56.6 112 41.1
VMungo1309G2485 Vigna mungo HOM05D001507 ORTHO05D002108 1.7e-06 56.6 129 37.2
Haze_02327 Corylus avellana HOM05D001507 ORTHO05D002108 2.2e-06 56.2 85 45.9
ECA236G2631 Erigeron canadensis HOM05D001507 ORTHO05D002108 2.2e-06 56.2 85 43.5
Thhalv10000174m.g Eutrema salsugineum HOM05D001507 ORTHO05D002108 2.2e-06 56.2 85 40.0
QL11p044804 Quercus lobata HOM05D001507 ORTHO05D002108 2.2e-06 56.2 129 38.8
QL11p045220 Quercus lobata HOM05D001507 ORTHO05D002108 2.2e-06 56.2 129 38.8
TWI31G0979 Tripterygium wilfordii HOM05D001507 ORTHO05D002108 2.2e-06 56.2 129 38.0
TWI79G0980 Tripterygium wilfordii HOM05D001507 ORTHO05D002108 2.2e-06 56.2 129 37.2
Duzib052G0846 Durio zibethinus HOM05D001507 ORTHO05D002108 2.9e-06 55.8 84 40.5
Lj3g0000522 Lotus japonicus HOM05D001507 ORTHO05D002108 2.9e-06 55.8 85 40.0
Phvul.009G005500 Phaseolus vulgaris HOM05D001507 ORTHO05D002108 2.9e-06 55.8 132 34.8
Aa31LG7G15030 Aethionema arabicum HOM05D001507 ORTHO05D002108 3.7e-06 55.5 102 38.2
arahy.Tifrunner.gnm1.ann1.PIWT4D Arachis hypogaea HOM05D001507 ORTHO05D002108 3.7e-06 55.5 111 38.7
arahy.Tifrunner.gnm1.ann1.V5R7Y7 Arachis hypogaea HOM05D001507 ORTHO05D002108 3.7e-06 55.5 111 38.7
Glyma.06G009900 Glycine max HOM05D001507 ORTHO05D002108 3.7e-06 55.5 85 42.4
Hma1.2p1_0851F.1_g228430 Hydrangea macrophylla HOM05D001507 ORTHO05D002108 3.7e-06 55.5 113 39.8
Lj5A193T105 Lonicera japonica HOM05D001507 ORTHO05D002108 3.7e-06 55.5 121 41.3
Aqoxy5G01555 Aquilegia oxysepala HOM05D001507 ORTHO05D002108 4.9e-06 55.1 116 38.8
Lj1g0004522 Lotus japonicus HOM05D001507 ORTHO05D002108 4.9e-06 55.1 101 41.6
Actinidia00547 Actinidia chinensis HOM05D001507 ORTHO05D002108 6.4e-06 54.7 103 38.8
BcaC07g41149 Brassica carinata HOM05D001507 ORTHO05D002108 6.4e-06 54.7 107 35.5
Ca_30246_v3 Cicer arietinum L. HOM05D001507 ORTHO05D002108 6.4e-06 54.7 132 37.1
Dinv42039 Davidia involucrata HOM05D001507 ORTHO05D002108 6.4e-06 54.7 103 40.8
Lsat_1_v5_gn_7_91580 Lactuca sativa HOM05D001507 ORTHO05D002108 6.4e-06 54.7 113 33.6
Peaxi162Scf00016g00428 Petunia axillaris HOM05D001507 ORTHO05D002108 6.4e-06 54.7 114 43.9
Sp7g36680 Schrenkiella parvula HOM05D001507 ORTHO05D002108 6.4e-06 54.7 133 33.8
DCAR_028968 Daucus carota HOM05D001507 ORTHO05D002108 8.3e-06 54.3 146 36.3
Nitab4.5_0005128g0060 Nicotiana tabacum HOM05D001507 ORTHO05D002108 8.3e-06 54.3 87 46.0
THA.LOC104804124 Tarenaya hassleriana HOM05D001507 ORTHO05D002108 8.3e-06 54.3 85 44.7
THA.LOC104807750 Tarenaya hassleriana HOM05D001507 ORTHO05D002108 8.3e-06 54.3 85 40.0


User provided reference genes

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