Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR068770 Cardamine hirsuta HOM05D006246 ORTHO05D007932 1.6e-35 152.1 73 100.0
Sp4g13780 Schrenkiella parvula HOM05D006246 ORTHO05D007932 3.0e-18 94.7 58 81.0
BcaC02g11223 Brassica carinata HOM05D006246 ORTHO05D007932 1.5e-17 92.4 58 79.3
BolC4t23440H Brassica oleracea HOM05D006246 ORTHO05D007932 1.5e-17 92.4 58 79.3
Thhalv10017462m.g Eutrema salsugineum HOM05D006246 ORTHO05D007932 1.5e-17 92.4 58 79.3
Sp1g40730 Schrenkiella parvula HOM05D006246 ORTHO05D007932 2.6e-17 91.7 58 79.3
BcaB02g10382 Brassica carinata HOM05D006246 ORTHO05D007932 3.4e-17 91.3 58 77.6
A05p14300 Brassica napus HOM05D006246 ORTHO05D007932 4.4e-17 90.9 56 80.4
Carub.0004s1261 Capsella rubella HOM05D006246 ORTHO05D007932 4.4e-17 90.9 56 80.4
CARHR124920 Cardamine hirsuta HOM05D006246 ORTHO05D007932 4.4e-17 90.9 56 80.4
Aa31LG5G5660 Aethionema arabicum HOM05D006246 ORTHO05D007932 2.8e-16 88.2 69 66.7
Carub.0002s2226 Capsella rubella HOM05D006246 ORTHO05D007932 3.5e-14 81.3 56 71.4
A05p14510 Brassica napus HOM05D006246 ORTHO05D007932 2.3e-13 78.6 59 69.5
TWI14G1413 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 8.6e-13 76.6 71 56.3
Actinidia30538 Actinidia chinensis HOM05D006246 ORTHO05D007932 1.9e-12 75.5 59 61.0
BraA05t20382Z Brassica rapa HOM05D006246 ORTHO05D007932 2.5e-12 75.1 57 68.4
THA.LOC104826210 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 4.3e-12 74.3 57 66.7
DCAR_027686 Daucus carota HOM05D006246 ORTHO05D007932 7.3e-12 73.6 53 66.0
TWI59G0384 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 7.3e-12 73.6 69 58.0
FAN18G0928 Fragaria x ananassa HOM05D006246 ORTHO05D007932 2.1e-11 72.0 71 53.5
FvH4_5g18370 Fragaria vesca HOM05D006246 ORTHO05D007932 2.8e-11 71.6 49 69.4
FAN08G0289 Fragaria x ananassa HOM05D006246 ORTHO05D007932 2.8e-11 71.6 49 69.4
FAN13G0403 Fragaria x ananassa HOM05D006246 ORTHO05D007932 2.8e-11 71.6 49 69.4
THA.LOC104800880 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 2.8e-11 71.6 49 69.4
Medtr1g101240 Medicago truncatula HOM05D006246 ORTHO05D007932 4.7e-11 70.9 51 68.6
Psat6g198440 Pisum sativum HOM05D006246 ORTHO05D007932 4.7e-11 70.9 51 68.6
SHI11488 Sapria himalayana HOM05D006246 ORTHO05D007932 4.7e-11 70.9 69 52.2
Sc23g0001630 Simmondsia chinensis HOM05D006246 ORTHO05D007932 4.7e-11 70.9 48 68.8
TPR.G26967 Trifolium pratense HOM05D006246 ORTHO05D007932 4.7e-11 70.9 51 68.6
Migut.N03358 Erythranthe guttata HOM05D006246 ORTHO05D007932 6.1e-11 70.5 54 63.0
Glyma.04G204100 Glycine max HOM05D006246 ORTHO05D007932 8.0e-11 70.1 49 69.4
Glyma.06G161300 Glycine max HOM05D006246 ORTHO05D007932 8.0e-11 70.1 49 69.4
Phvul.009G159900 Phaseolus vulgaris HOM05D006246 ORTHO05D007932 1.0e-10 69.7 51 66.7
Ca_00010_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 1.4e-10 69.3 51 66.7
Ca_00013_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 1.4e-10 69.3 51 66.7
TPR.G20664 Trifolium pratense HOM05D006246 ORTHO05D007932 1.8e-10 68.9 51 66.7
SalBow8G1996 Salvia bowleyana HOM05D006246 ORTHO05D007932 3.1e-10 68.2 56 60.7
Atru.chr13.2337 Acer truncatum HOM05D006246 ORTHO05D007932 4.0e-10 67.8 68 55.9
Cpa.g.sc49.43 Carica papaya HOM05D006246 ORTHO05D007932 4.0e-10 67.8 69 55.1
Lj5g0026305 Lotus japonicus HOM05D006246 ORTHO05D007932 4.0e-10 67.8 49 67.3
QL02p028696 Quercus lobata HOM05D006246 ORTHO05D007932 4.0e-10 67.8 46 69.6
Atru.chr3.3065 Acer truncatum HOM05D006246 ORTHO05D007932 5.2e-10 67.4 68 54.4
Ciclev10002937m.g Citrus clementina HOM05D006246 ORTHO05D007932 5.2e-10 67.4 69 55.1
Potri.007G101900 Populus trichocarpa HOM05D006246 ORTHO05D007932 6.8e-10 67.0 55 61.8
Sed0027909 Sechium edule HOM05D006246 ORTHO05D007932 6.8e-10 67.0 47 72.3
HPP92_026670 Vanilla planifolia HOM05D006246 ORTHO05D007932 6.8e-10 67.0 59 54.2
Potri.005G067400 Populus trichocarpa HOM05D006246 ORTHO05D007932 8.9e-10 66.6 54 59.3
SGA_v2.0_scaffold118G32544 Striga asiatica HOM05D006246 ORTHO05D007932 8.9e-10 66.6 52 61.5
SGA_v2.0_scaffold24G10594 Striga asiatica HOM05D006246 ORTHO05D007932 8.9e-10 66.6 52 61.5
Lalb_Chr03g0034581 Lupinus albus HOM05D006246 ORTHO05D007932 1.2e-09 66.2 54 64.8
CSS0014325 Camellia sinensis var. sinensis HOM05D006246 ORTHO05D007932 1.5e-09 65.9 46 65.2
Cfa012983 Carpinus fangiana HOM05D006246 ORTHO05D007932 1.5e-09 65.9 49 65.3
Lalb_Chr01g0009371 Lupinus albus HOM05D006246 ORTHO05D007932 1.5e-09 65.9 58 62.1
Sabra07G0084000 Salix brachista HOM05D006246 ORTHO05D007932 2.6e-09 65.1 47 66.0
CDE09G0543 Ceratophyllum demersum HOM05D000196 ORTHO05D000279 3.4e-09 64.7 58 56.9
Thecc.03G070200 Theobroma cacao HOM05D006246 ORTHO05D007932 3.4e-09 64.7 55 56.4
Duzib114G0955 Durio zibethinus HOM05D006246 ORTHO05D007932 4.4e-09 64.3 57 54.4
Haze_21346 Corylus avellana HOM05D006246 ORTHO05D007932 5.8e-09 63.9 47 66.0
Haze_21352 Corylus avellana HOM05D006246 ORTHO05D007932 5.8e-09 63.9 47 66.0
Oeu021218.1 Olea europaea HOM05D006246 ORTHO05D007932 5.8e-09 63.9 51 60.8
Migut.C01275 Erythranthe guttata HOM05D006246 ORTHO05D007932 7.5e-09 63.5 54 59.3
MBI03_g07695_MAGBIO Magnolia biondii HOM05D006246 ORTHO05D007932 7.5e-09 63.5 48 60.4
HanXRQChr11g0322351 Helianthus annuus HOM05D006246 ORTHO05D007932 1.7e-08 62.4 45 62.2
Eucgr.I02713 Eucalyptus grandis HOM05D006246 ORTHO05D007932 2.2e-08 62.0 52 61.5
Gohir.A05G293700 Gossypium hirsutum HOM05D006246 ORTHO05D007932 2.9e-08 61.6 51 56.9
BcaB06g28525 Brassica carinata HOM05D006246 ORTHO05D007932 3.7e-08 61.2 51 66.7
BolC4t27573H Brassica oleracea HOM05D006246 ORTHO05D007932 3.7e-08 61.2 51 66.7
Duzib106G0997 Durio zibethinus HOM05D006246 ORTHO05D007932 3.7e-08 61.2 51 56.9
Gohir.A05G410500 Gossypium hirsutum HOM05D006246 ORTHO05D007932 3.7e-08 61.2 51 56.9
Sabra05G0055400 Salix brachista HOM05D006246 ORTHO05D007932 3.7e-08 61.2 47 61.7
Gorai.009G310900 Gossypium raimondii HOM05D006246 ORTHO05D007932 4.9e-08 60.8 51 56.9
TAR636G3186 Trochodendron aralioides HOM05D006246 ORTHO05D007932 4.9e-08 60.8 40 67.5
Actinidia08157 Actinidia chinensis HOM05D006246 ORTHO05D007932 6.4e-08 60.5 44 61.4
COL.COLO4_29720 Corchorus olitorius HOM05D006246 ORTHO05D007932 6.4e-08 60.5 47 61.7
PSO170G6052 Papaver somniferum HOM05D006246 ORTHO05D007932 6.4e-08 60.5 51 56.9
PSO782G0303 Papaver somniferum HOM05D006246 ORTHO05D007932 6.4e-08 60.5 49 59.2
CDE02G3719 Ceratophyllum demersum HOM05D006246 ORTHO05D007932 8.3e-08 60.1 58 55.2
Gohir.D05G294400 Gossypium hirsutum HOM05D006246 ORTHO05D007932 1.4e-07 59.3 49 57.1
Zm00001eb059790 Zea mays HOM05D006246 ORTHO05D007932 1.9e-07 58.9 52 59.6
MD06G1239400 Malus domestica HOM05D006246 ORTHO05D007932 2.4e-07 58.5 40 67.5
AT2G31305 Arabidopsis thaliana HOM05D006246 ORTHO05D007932 3.2e-07 58.2 41 75.6
arahy.Tifrunner.gnm1.ann1.V9PSGM Arachis hypogaea HOM05D006246 ORTHO05D007932 3.2e-07 58.2 51 60.8
C04p19050 Brassica napus HOM05D006246 ORTHO05D007932 3.2e-07 58.2 41 75.6
FAN04G2944 Fragaria x ananassa HOM05D006246 ORTHO05D007932 4.1e-07 57.8 46 63.0
Medtr7g085440 Medicago truncatula HOM05D006246 ORTHO05D007932 4.1e-07 57.8 38 68.4
Sed0011737 Sechium edule HOM05D006246 ORTHO05D007932 5.4e-07 57.4 38 68.4
TWI23G1247 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 5.4e-07 57.4 38 68.4
Os05g0270400 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 7.0e-07 57.0 50 58.0
AagrBONN_evm.TU.Sc2ySwM_344.1565 Anthoceros agrestis HOM05D006246 ORTHO05D007932 1.2e-06 56.2 56 55.4
AL4G26530 Arabidopsis lyrata HOM05D006246 ORTHO05D007932 1.2e-06 56.2 40 75.0
BcaB06g28444 Brassica carinata HOM05D006246 ORTHO05D007932 1.2e-06 56.2 40 75.0
BraA05t20360Z Brassica rapa HOM05D006246 ORTHO05D007932 1.2e-06 56.2 40 75.0
vmacro01162 Vaccinium macrocarpon HOM05D006246 ORTHO05D007932 2.0e-06 55.5 38 63.2
A04p24110 Brassica napus HOM05D006246 ORTHO05D007932 2.7e-06 55.1 41 73.2
C04p60820 Brassica napus HOM05D006246 ORTHO05D007932 2.7e-06 55.1 41 73.2
BraA04t17931Z Brassica rapa HOM05D006246 ORTHO05D007932 2.7e-06 55.1 41 73.2
Aqoxy7G03540 Aquilegia oxysepala HOM05D006246 ORTHO05D007932 3.5e-06 54.7 48 56.2
CAN.G1647.5 Capsicum annuum HOM05D006246 ORTHO05D007932 7.8e-06 53.5 41 61.0


User provided reference genes

Program Settings