Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 0.0e+00 1357.4 754 100.0
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 2.9e-281 971.8 801 73.4
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 4.7e-279 964.5 810 72.2
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 1.7e-273 946.0 813 70.5
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 8.5e-273 943.7 916 65.3
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 2.3e-270 935.6 823 69.3
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 4.4e-269 931.4 816 69.7
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 1.7e-268 929.5 817 69.8
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 3.1e-267 925.2 828 68.5
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 3.1e-267 925.2 828 68.6
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 6.5e-265 917.5 807 71.6
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 7.5e-261 904.0 807 67.2
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 7.7e-258 894.0 810 68.1
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 5.9e-250 867.8 808 66.3
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 5.0e-233 811.6 732 67.3
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 1.1e-203 714.1 828 57.2
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 3.6e-199 699.1 780 53.1
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 3.6e-199 699.1 809 52.9
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 2.4e-198 696.4 818 53.1
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 5.3e-198 695.3 810 53.0
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 5.8e-197 691.8 838 50.8
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 1.7e-196 690.3 810 52.5
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 6.4e-196 688.3 816 53.9
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 1.4e-195 687.2 812 55.3
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 1.6e-194 683.7 827 52.5
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 7.9e-194 681.4 812 53.6
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 1.3e-191 674.1 831 52.1
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 2.8e-191 672.9 843 51.6
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 1.4e-190 670.6 817 51.8
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 4.0e-190 669.1 807 52.5
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 3.4e-189 666.0 811 52.0
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 2.9e-188 662.9 851 48.3
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 8.4e-188 661.4 812 52.3
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 1.1e-187 661.0 800 50.9
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 1.9e-187 660.2 793 52.2
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 4.2e-187 659.1 824 52.4
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 4.2e-187 659.1 830 49.5
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 4.6e-186 655.6 816 49.3
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 1.8e-185 653.7 829 50.1
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 2.3e-185 653.3 831 51.6
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 1.1e-184 651.0 866 49.0
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 3.3e-184 649.4 807 51.3
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 6.2e-183 645.2 808 49.0
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 1.1e-182 644.4 826 50.5
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 1.1e-182 644.4 816 51.2
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 1.1e-182 644.4 811 49.3
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 1.1e-182 644.4 813 51.2
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 3.1e-182 642.9 841 49.6
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 3.1e-182 642.9 838 50.6
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 4.0e-182 642.5 811 52.0
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 6.9e-182 641.7 793 49.9
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.5e-181 640.6 814 50.9
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 5.8e-181 638.6 808 50.9
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 7.6e-181 638.3 780 50.1
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 2.2e-180 636.7 822 49.5
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 8.4e-180 634.8 834 49.5
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 8.4e-180 634.8 832 49.3
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 1.1e-179 634.4 823 50.5
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 1.4e-179 634.0 801 50.2
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 3.2e-179 632.9 795 51.2
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 3.5e-178 629.4 791 51.2
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 2.3e-177 626.7 819 51.3
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 5.1e-177 625.5 809 50.7
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 8.7e-177 624.8 813 50.4
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 1.5e-176 624.0 807 49.4
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 1.9e-176 623.6 803 48.3
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 3.3e-176 622.9 813 49.6
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 4.3e-176 622.5 810 50.7
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 2.2e-175 620.2 806 48.8
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 2.8e-175 619.8 830 49.0
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 3.7e-175 619.4 784 51.4
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 8.2e-175 618.2 826 49.6
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 3.1e-174 616.3 799 49.2
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 3.1e-174 616.3 829 49.3
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 1.2e-173 614.4 835 49.2
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 5.9e-173 612.1 844 49.6
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 1.0e-172 611.3 817 51.0
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 1.7e-172 610.5 793 48.9
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 2.9e-172 609.8 818 49.9
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 3.8e-172 609.4 835 47.3
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 1.9e-171 607.1 769 51.1
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 2.5e-171 606.7 821 49.9
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 7.2e-171 605.1 797 50.4
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 3.6e-170 602.8 798 49.6
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 1.0e-169 601.3 796 49.4
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 3.3e-168 596.3 757 50.5
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 3.3e-168 596.3 805 48.4
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 3.7e-167 592.8 804 48.6
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 5.3e-166 589.0 811 49.4
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 9.1e-166 588.2 796 49.6
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 2.6e-165 586.6 794 48.7
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 2.6e-165 586.6 811 48.7
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.7e-164 583.9 775 48.0
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 1.1e-163 581.3 803 47.6
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 5.5e-163 578.9 880 45.1
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 8.5e-156 555.1 755 48.7
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.7e-154 549.3 819 44.7
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 9.7e-152 541.6 691 53.1
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 4.1e-150 536.2 817 41.7
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 5.9e-149 532.3 792 47.3
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 5.0e-148 529.3 742 47.4
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 5.3e-142 509.2 516 63.8
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 7.0e-134 482.3 788 44.5
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 1.3e-132 478.0 647 49.5
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 1.0e-129 468.4 829 41.6
Mapoly0084s0017 Marchantia polymorpha HOM05D003551 ORTHO05D004869 4.0e-129 466.5 807 41.8
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.1e-123 448.4 786 40.7
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 1.2e-122 444.9 777 39.1
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.2e-120 438.3 777 38.2
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.2e-120 438.3 777 38.5
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 1.2e-120 438.3 610 47.9
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 4.3e-115 419.9 827 36.3
SMO197G0095 Selaginella moellendorffii HOM05D003551 ORTHO05D004869 5.6e-107 392.9 731 39.9
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 3.6e-106 390.2 589 48.2
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 8.9e-105 385.6 825 36.6
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 3.7e-103 380.2 447 48.1
Pp3c21_561 Physcomitrium patens HOM05D003551 ORTHO05D004869 1.4e-102 378.3 699 41.5
AagrBONN_evm.TU.Sc2ySwM_344.4679 Anthoceros agrestis HOM05D003551 ORTHO05D004869 1.6e-98 364.8 722 39.8
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 1.5e-96 358.2 413 58.6
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 2.0e-96 357.8 474 52.3
CBR_g23824 Chara braunii HOM05D003551 ORTHO05D004869 2.5e-91 340.9 886 34.8
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 3.4e-88 330.5 499 46.9
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 1.5e-83 315.1 552 43.7
Actinidia01370 Actinidia chinensis HOM05D003551 ORTHO05D004869 3.3e-83 313.9 467 46.3
TAR374G0468 Trochodendron aralioides HOM05D003551 ORTHO05D004869 1.8e-81 308.1 316 53.8
Atru.chr11.1974 Acer truncatum HOM05D003551 ORTHO05D004869 3.5e-77 293.9 357 50.1
FAN07G2018 Fragaria x ananassa HOM05D003551 ORTHO05D004869 6.0e-77 293.1 279 58.4
PRCOL_00005223 Prasinoderma coloniale HOM05D003551 ORTHO05D004869 2.9e-71 274.2 817 33.0
MCO05G293 Micromonas commoda HOM05D003551 ORTHO05D004869 1.6e-69 268.5 761 32.9
Medtr4g006000 Medicago truncatula HOM05D003551 ORTHO05D004869 4.3e-67 260.4 525 37.9
TPR.G18550 Trifolium pratense HOM05D003551 ORTHO05D004869 2.4e-65 254.6 530 34.0
SHI17843 Sapria himalayana HOM05D003551 ORTHO05D000023 1.7e-63 248.4 427 38.4
Cre06.g277050 Chlamydomonas reinhardtii HOM05D003551 ORTHO05D004869 1.9e-62 245.0 903 30.7
AUR62015661 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.6e-61 241.9 644 33.4
Medtr4g005970 Medicago truncatula HOM05D003551 ORTHO05D004869 1.1e-49 202.6 437 35.2
BcaB04g19498 Brassica carinata HOM05D003551 ORTHO05D004869 8.5e-47 193.0 128 79.7
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 1.9e-46 191.8 360 47.2
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 2.9e-39 167.9 385 41.0
Cfa023305 Carpinus fangiana HOM05D003551 ORTHO05D004869 2.7e-37 161.4 763 24.9
Actinidia01371 Actinidia chinensis HOM05D002413 ORTHO05D002638 8.0e-37 159.8 227 50.2
Actinidia08115 Actinidia chinensis HOM05D003551 ORTHO05D004869 1.4e-36 159.1 217 47.0
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.6e-35 154.8 371 36.1
unitig_22.g6421 Utricularia gibba HOM05D003551 ORTHO05D004869 2.7e-32 144.8 134 56.7
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.0e-27 128.6 333 35.4
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.0e-27 128.6 314 36.6
BcaB06g26385 Brassica carinata HOM05D003551 ORTHO05D016818 3.7e-26 124.4 103 68.0
BcaB07g33803 Brassica carinata HOM05D003551 ORTHO05D032399 3.1e-25 121.3 105 67.6
Zm00001eb279220 Zea mays HOM05D003551 ORTHO05D004869 2.7e-24 118.2 141 49.6
Actinidia08116 Actinidia chinensis HOM05D003551 ORTHO05D004869 3.0e-20 104.8 124 53.2
HPP92_006539 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.9e-18 97.4 127 49.6
HPP92_026938 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.1e-17 94.4 323 31.0
HPP92_006872 Vanilla planifolia HOM05D003551 ORTHO05D016818 7.0e-17 93.6 83 59.0
HPP92_006854 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.6e-16 92.4 78 62.8
HPP92_006576 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.0e-16 92.0 203 37.4
BcaB07g32274 Brassica carinata HOM05D003551 ORTHO05D004869 1.0e-15 89.7 55 78.2
HPP92_027653 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.6e-14 84.0 281 32.4
HPP92_028550 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.2e-13 82.8 96 52.1
arahy.Tifrunner.gnm1.ann1.LJ7GP5 Arachis hypogaea HOM05D003551 ORTHO05D004869 3.6e-13 81.3 102 50.0
HPP92_028370 Vanilla planifolia HOM05D003551 ORTHO05D016818 2.0e-11 75.5 70 57.1
HPP92_027078 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.4e-11 74.7 264 31.1
BcaB08g34419 Brassica carinata HOM05D003551 ORTHO05D004869 5.7e-11 73.9 54 74.1
HPP92_006855 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.2e-10 72.0 231 30.7
A04p22140 Brassica napus HOM05D003551 ORTHO05D103594 6.4e-10 70.5 43 69.8
HPP92_006538 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.3e-10 70.1 80 51.2
Migut.C01140 Erythranthe guttata HOM05D003551 ORTHO05D004869 3.2e-09 68.2 219 30.1
HPP92_006540 Vanilla planifolia HOM05D003551 ORTHO05D016818 5.4e-09 67.4 63 57.1
Lj6A816T56 Lonicera japonica HOM05D003551 ORTHO05D004869 9.2e-09 66.6 51 70.6
HPP92_027083 Vanilla planifolia HOM05D003551 ORTHO05D004869 9.2e-09 66.6 137 40.1
HPP92_027994 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.0e-07 63.2 246 30.1
HPP92_028371 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.0e-07 61.6 314 29.6
HPP92_027652 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.5e-06 59.3 55 60.0
HPP92_026933 Vanilla planifolia HOM05D015067 ORTHO05D427257 1.9e-06 58.9 38 73.7
Sed0014055 Sechium edule HOM05D003551 ORTHO05D004869 9.5e-06 56.6 88 44.3


User provided reference genes

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