Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR066840 Cardamine hirsuta HOM05D003094 ORTHO05D003482 1.9e-89 332.8 211 100.0
Sp5g28960 Schrenkiella parvula HOM05D003094 ORTHO05D003482 2.2e-40 169.9 136 69.1
AL2G33580 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 6.3e-40 168.3 219 59.8
Thhalv10019822m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 3.1e-39 166.0 136 67.6
A02p18880 Brassica napus HOM05D003094 ORTHO05D003482 2.7e-35 152.9 158 58.2
AT1G73770 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 6.1e-35 151.8 213 49.3
BcaC03g15460 Brassica carinata HOM05D003094 ORTHO05D003482 1.0e-34 151.0 139 64.7
BolC2t09174H Brassica oleracea HOM05D003094 ORTHO05D003482 1.0e-34 151.0 139 64.7
BraA02t06932Z Brassica rapa HOM05D003094 ORTHO05D003482 1.0e-34 151.0 151 58.9
C02p31410 Brassica napus HOM05D003094 ORTHO05D003482 3.9e-34 149.1 162 56.2
Carub.0002s2052 Capsella rubella HOM05D003094 ORTHO05D003482 3.9e-34 149.1 159 56.6
BcaB05g24812 Brassica carinata HOM05D003094 ORTHO05D003482 5.9e-30 135.2 256 47.7
Aa31LG4G4100 Aethionema arabicum HOM05D003094 ORTHO05D003482 5.3e-23 112.1 174 51.1
THA.LOC104812151 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 1.2e-19 100.9 173 44.5
Atru.chr9.906 Acer truncatum HOM05D003094 ORTHO05D003482 2.6e-14 83.2 134 43.3
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.5e-14 82.8 140 40.7
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 5.9e-14 82.0 140 39.3
TWI60G1358 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 5.0e-13 79.0 138 38.4
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 8.5e-13 78.2 143 40.6
AL3G31470 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 1.1e-12 77.8 146 38.4
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 3.2e-12 76.3 161 37.3
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.2e-12 76.3 140 37.9
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 3.2e-12 76.3 128 41.4
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 3.2e-12 76.3 140 39.3
THA.LOC104820380 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 4.2e-12 75.9 143 38.5
Carub.0003s1800 Capsella rubella HOM05D003094 ORTHO05D003482 7.2e-12 75.1 147 38.1
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 9.4e-12 74.7 140 38.6
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 9.4e-12 74.7 139 38.8
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 1.6e-11 73.9 156 34.6
Cpa.g.sc51.5 Carica papaya HOM05D003094 ORTHO05D003482 2.7e-11 73.2 140 38.6
Gohir.A07G059300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.7e-11 72.4 125 38.4
Gorai.001G067600 Gossypium raimondii HOM05D003094 ORTHO05D003482 4.7e-11 72.4 125 38.4
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 8.0e-11 71.6 147 39.5
TWI81G0976 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 8.0e-11 71.6 154 37.7
AT3G18240 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 1.0e-10 71.2 142 35.9
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 1.0e-10 71.2 159 37.7
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 1.0e-10 71.2 139 38.1
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 1.0e-10 71.2 158 32.9
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.0e-10 71.2 133 36.8
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 1.4e-10 70.9 159 37.7
Gohir.D07G064100 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.4e-10 70.9 125 37.6
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 1.4e-10 70.9 139 37.4
Hund11930 Selenicereus undatus HOM05D003094 ORTHO05D003482 1.4e-10 70.9 127 39.4
TAR374G0309 Trochodendron aralioides HOM05D003094 ORTHO05D003482 1.4e-10 70.9 139 37.4
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 1.8e-10 70.5 141 35.5
TAR374G0733 Trochodendron aralioides HOM05D003094 ORTHO05D003482 1.8e-10 70.5 139 36.7
CsaV3_1G006930 Cucumis sativus L. HOM05D003094 ORTHO05D003482 2.3e-10 70.1 126 38.1
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 3.0e-10 69.7 158 34.2
arahy.Tifrunner.gnm1.ann1.D1K70W Arachis hypogaea HOM05D003094 ORTHO05D003482 4.0e-10 69.3 151 33.8
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 5.2e-10 68.9 139 37.4
PSO017G6706 Papaver somniferum HOM05D003094 ORTHO05D003482 5.2e-10 68.9 146 35.6
AT4G21460 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 8.8e-10 68.2 141 36.9
arahy.Tifrunner.gnm1.ann1.2IG2A1 Arachis hypogaea HOM05D003094 ORTHO05D003482 8.8e-10 68.2 151 33.1
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 8.8e-10 68.2 140 37.9
PSO063G0897 Papaver somniferum HOM05D003094 ORTHO05D003482 1.2e-09 67.8 145 34.5
Aa31LG8G5090 Aethionema arabicum HOM05D003094 ORTHO05D003482 1.5e-09 67.4 156 31.4
Cpa.g.sc3.463 Carica papaya HOM05D003094 ORTHO05D003482 1.5e-09 67.4 135 34.8
AUR62040348 Chenopodium quinoa HOM05D003094 ORTHO05D003482 1.5e-09 67.4 161 35.4
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 1.5e-09 67.4 130 37.7
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 2.0e-09 67.0 146 39.0
COL.COLO4_27184 Corchorus olitorius HOM05D003094 ORTHO05D003482 2.0e-09 67.0 130 40.0
Sed0019035 Sechium edule HOM05D003094 ORTHO05D003482 3.4e-09 66.2 118 39.8
CDE11G0955 Ceratophyllum demersum HOM05D003094 ORTHO05D003482 7.5e-09 65.1 138 34.1
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 7.5e-09 65.1 142 33.8
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 7.5e-09 65.1 144 33.3
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 9.8e-09 64.7 166 31.9
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 9.8e-09 64.7 144 34.7
Peaxi162Scf00683g00159 Petunia axillaris HOM05D003094 ORTHO05D003482 9.8e-09 64.7 149 33.6
C05p47760 Brassica napus HOM05D003094 ORTHO05D003482 1.3e-08 64.3 154 32.5
BraA05t21983Z Brassica rapa HOM05D003094 ORTHO05D003482 1.3e-08 64.3 147 34.7
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 1.3e-08 64.3 166 31.3
MELO3C002109.2 Cucumis melo HOM05D003094 ORTHO05D003482 1.3e-08 64.3 127 36.2
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 1.3e-08 64.3 144 34.7
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 1.3e-08 64.3 149 34.9
VMungo0251G1973 Vigna mungo HOM05D003094 ORTHO05D003482 1.3e-08 64.3 148 34.5
A05p31440 Brassica napus HOM05D003094 ORTHO05D003482 1.7e-08 63.9 147 34.7
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 1.7e-08 63.9 156 36.5
Ah.11g047710 Amaranthus hybridus HOM05D003094 ORTHO05D003482 2.2e-08 63.5 83 43.4
BolC5t33491H Brassica oleracea HOM05D003094 ORTHO05D003482 2.2e-08 63.5 153 32.0
CiPaw.16G089200 Carya illinoinensis HOM05D003094 ORTHO05D003482 2.8e-08 63.2 169 30.8
Sp3g16360 Schrenkiella parvula HOM05D003094 ORTHO05D003482 2.8e-08 63.2 156 32.7
BcaC05g28648 Brassica carinata HOM05D003094 ORTHO05D003482 3.7e-08 62.8 153 32.0
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 3.7e-08 62.8 156 35.3
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 3.7e-08 62.8 139 32.4
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 3.7e-08 62.8 156 32.1
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 6.3e-08 62.0 139 33.8
Cc04_g06860 Coffea canephora HOM05D003094 ORTHO05D003482 8.3e-08 61.6 147 32.0
COL.COLO4_38537 Corchorus olitorius HOM05D003094 ORTHO05D003482 8.3e-08 61.6 71 45.1
MD06G1220600 Malus domestica HOM05D003094 ORTHO05D003482 8.3e-08 61.6 133 33.8
Hund02353 Selenicereus undatus HOM05D003094 ORTHO05D003482 8.3e-08 61.6 93 39.8
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 1.1e-07 61.2 147 36.7
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 1.1e-07 61.2 108 40.7
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 1.1e-07 61.2 141 36.9
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 1.1e-07 61.2 147 34.7
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 1.1e-07 61.2 164 33.5
Sc10g0009380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 1.1e-07 61.2 122 33.6
Actinidia36579 Actinidia chinensis HOM05D003094 ORTHO05D003482 1.4e-07 60.8 59 45.8
CARHR093590 Cardamine hirsuta HOM05D003094 ORTHO05D003482 1.4e-07 60.8 155 31.6
Duzib084G0458 Durio zibethinus HOM05D003094 ORTHO05D003482 1.4e-07 60.8 156 35.3
Nitab4.5_0001986g0070 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.4e-07 60.8 171 29.8
Manes.01G015200 Manihot esculenta HOM05D003094 ORTHO05D003482 1.8e-07 60.5 120 37.5
Cfa019731 Carpinus fangiana HOM05D003094 ORTHO05D003482 2.4e-07 60.1 138 37.0
ClCG04G010900 Citrullus lanatus HOM05D003094 ORTHO05D003482 2.4e-07 60.1 131 35.9
CsaV3_1G004020 Cucumis sativus L. HOM05D003094 ORTHO05D003482 2.4e-07 60.1 145 35.2
SHI53281 Sapria himalayana HOM05D003094 ORTHO05D003482 2.4e-07 60.1 159 34.0
Aqoxy1G00379 Aquilegia oxysepala HOM05D003094 ORTHO05D003482 5.4e-07 58.9 145 33.1
Haze_18735 Corylus avellana HOM05D003094 ORTHO05D003482 5.4e-07 58.9 155 36.1
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 5.4e-07 58.9 147 32.0
PGSC0003DMG402005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 5.4e-07 58.9 158 31.6
SGA_v2.0_scaffold29G12062 Striga asiatica HOM05D003094 ORTHO05D003482 5.4e-07 58.9 123 35.0
FAN05G2182 Fragaria x ananassa HOM05D003094 ORTHO05D003482 7.0e-07 58.5 144 32.6
Rhsim12G0141600 Rhododendron simsii HOM05D003094 ORTHO05D003482 7.0e-07 58.5 67 47.8
Sc04g0003380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 7.0e-07 58.5 97 40.2
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 9.1e-07 58.2 148 31.8
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 1.2e-06 57.8 95 41.1
Thhalv10020806m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 1.2e-06 57.8 143 31.5
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.2e-06 57.8 114 37.7
unitig_21.g20424 Utricularia gibba HOM05D003094 ORTHO05D003482 1.6e-06 57.4 154 30.5
EL10Ac5g11481 Beta vulgaris HOM05D003094 ORTHO05D003482 2.0e-06 57.0 113 38.9
ECA238G4750 Erigeron canadensis HOM05D003094 ORTHO05D003482 2.0e-06 57.0 115 31.3
TPR.G35824 Trifolium pratense HOM05D003094 ORTHO05D003482 2.0e-06 57.0 133 34.6
Ciclev10023622m.g Citrus clementina HOM05D003094 ORTHO05D003482 2.7e-06 56.6 68 45.6
FAN18G0043 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.7e-06 56.6 123 35.8
Manes.05G133000 Manihot esculenta HOM05D003094 ORTHO05D003482 2.7e-06 56.6 134 34.3
Potri.015G044100 Populus trichocarpa HOM05D003094 ORTHO05D003482 2.7e-06 56.6 139 34.5
Sopen03g038060 Solanum pennellii HOM05D003094 ORTHO05D003482 2.7e-06 56.6 78 38.5
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 2.7e-06 56.6 127 33.1
Eucgr.K02236 Eucalyptus grandis HOM05D003094 ORTHO05D003482 3.5e-06 56.2 61 45.9
FAN02G1016 Fragaria x ananassa HOM05D003094 ORTHO05D003482 4.5e-06 55.8 144 31.9
Gohir.A02G112001 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.5e-06 55.8 55 49.1
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 4.5e-06 55.8 59 45.8
Actinidia35101 Actinidia chinensis HOM05D003094 ORTHO05D003482 5.9e-06 55.5 90 36.7
CAN.G1129.13 Capsicum annuum HOM05D003094 ORTHO05D003482 5.9e-06 55.5 127 29.1
Gorai.012G098500 Gossypium raimondii HOM05D000575 ORTHO05D003482 5.9e-06 55.5 55 49.1
FAN13G1164 Fragaria x ananassa HOM05D003094 ORTHO05D003482 7.7e-06 55.1 120 35.8
Gorai.001G159100 Gossypium raimondii HOM05D003094 ORTHO05D003482 7.7e-06 55.1 56 46.4
Lsat_1_v5_gn_2_64400 Lactuca sativa HOM05D003094 ORTHO05D003482 7.7e-06 55.1 137 29.2
Lj4g0013095 Lotus japonicus HOM05D003094 ORTHO05D003482 7.7e-06 55.1 133 36.8


User provided reference genes

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