Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 1.1e-282 976.1 516 100.0
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 2.0e-257 892.1 520 87.9
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 2.5e-255 885.2 520 87.3
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 3.2e-255 884.8 520 87.3
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 6.0e-254 880.6 520 86.5
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 1.2e-249 866.3 520 87.1
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 2.2e-240 835.5 516 82.9
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 2.1e-238 828.9 517 83.4
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 2.7e-238 828.6 517 83.0
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 3.0e-237 825.1 517 82.4
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 1.5e-236 822.8 516 81.8
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 3.7e-235 818.1 516 81.4
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 2.2e-227 792.3 516 80.8
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 5.5e-215 751.1 521 74.7
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 3.2e-154 549.3 538 55.4
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 4.3e-151 538.9 533 55.0
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 7.4e-151 538.1 521 55.3
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 6.4e-147 525.0 533 55.0
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 8.4e-147 524.6 545 53.4
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 7.1e-146 521.5 534 52.8
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 9.3e-146 521.2 532 53.6
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 1.2e-145 520.8 534 53.9
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 3.5e-145 519.2 530 52.6
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 1.5e-143 513.8 550 52.0
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 1.9e-143 513.5 546 52.0
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 3.3e-143 512.7 544 52.9
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 5.6e-143 511.9 549 51.9
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 2.1e-142 510.0 531 52.9
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 1.2e-140 504.2 543 51.9
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.5e-140 503.8 535 51.2
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 5.8e-140 501.9 529 51.4
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 5.8e-140 501.9 538 52.4
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 3.8e-139 499.2 531 51.2
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.4e-138 497.3 539 50.6
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 3.2e-138 496.1 531 51.2
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 9.3e-138 494.6 524 52.7
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 2.1e-137 493.4 538 50.4
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 6.0e-137 491.9 547 50.5
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 3.0e-136 489.6 538 51.3
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 5.1e-136 488.8 681 44.1
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 6.7e-136 488.4 548 51.8
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 4.3e-135 485.7 527 52.0
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 4.3e-135 485.7 546 49.1
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 7.4e-135 485.0 512 52.1
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 9.7e-135 484.6 546 49.5
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 9.7e-135 484.6 520 53.1
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 1.2e-132 477.6 540 50.0
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 5.9e-132 475.3 543 49.7
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 3.2e-130 469.5 538 50.7
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 5.5e-130 468.8 538 50.7
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 5.5e-130 468.8 538 50.6
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 2.1e-129 466.8 544 48.7
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 2.7e-129 466.5 544 49.6
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 3.6e-129 466.1 539 49.9
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 6.1e-129 465.3 513 51.7
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 6.1e-129 465.3 514 51.0
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 1.8e-128 463.8 514 50.8
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 3.9e-128 462.6 536 49.3
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 5.1e-128 462.2 506 52.0
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 6.7e-128 461.8 540 50.0
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 2.5e-127 459.9 514 50.6
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 3.7e-126 456.1 513 51.5
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 8.2e-126 454.9 544 48.3
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 2.4e-125 453.4 571 47.1
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 4.1e-125 452.6 523 48.9
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 9.1e-125 451.4 518 49.0
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 2.6e-124 449.9 534 50.2
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 5.0e-123 445.7 514 49.2
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 8.5e-123 444.9 514 50.6
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 1.8e-120 437.2 537 47.3
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 2.3e-120 436.8 458 52.0
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 3.0e-120 436.4 535 48.2
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 5.1e-120 435.6 535 48.2
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 3.3e-119 433.0 574 44.9
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 4.4e-119 432.6 535 48.2
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 9.7e-119 431.4 540 46.5
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 1.3e-118 431.0 540 46.7
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 2.2e-118 430.3 503 51.1
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 7.0e-117 425.2 528 47.3
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 2.6e-116 423.3 526 48.5
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 5.9e-116 422.2 433 53.6
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 1.3e-115 421.0 530 46.8
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 5.0e-115 419.1 388 57.5
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 1.1e-114 417.9 481 48.4
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 5.5e-114 415.6 537 45.8
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 7.2e-114 415.2 472 49.4
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 2.7e-113 413.3 497 49.9
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 8.5e-107 391.7 533 45.8
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 4.4e-103 379.4 539 43.6
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 1.1e-101 374.8 524 44.3
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 4.5e-100 369.4 431 47.3
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 6.8e-96 355.5 465 46.5
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 6.8e-96 355.5 347 54.2
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 7.5e-95 352.1 521 43.8
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 7.0e-93 345.5 546 40.5
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 5.9e-84 315.8 309 55.7
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 7.8e-84 315.5 379 50.1
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 2.3e-80 303.9 334 50.6
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.6e-76 291.2 367 46.9
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 6.0e-76 289.3 541 37.2
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 2.5e-74 283.9 394 42.9
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 4.7e-73 279.6 397 41.1
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 5.2e-72 276.2 511 39.1
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 2.0e-71 274.2 544 35.8
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 1.4e-69 268.1 283 53.7
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 7.8e-68 262.3 468 38.2
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 4.4e-63 246.5 318 46.2
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 3.1e-56 223.8 398 35.7
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 5.8e-55 219.5 212 53.3
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.4e-53 214.9 277 46.9
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 5.4e-53 213.0 378 36.2
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 9.2e-53 212.2 165 63.0
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 2.7e-52 210.7 272 45.2
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 1.1e-50 205.3 256 45.7
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 1.9e-45 188.0 336 38.4
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 3.2e-45 187.2 408 34.1
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 2.3e-43 181.0 260 43.1
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 5.6e-42 176.4 158 59.5
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 5.3e-40 169.9 263 44.1
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 6.0e-36 156.4 196 43.9
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 3.3e-34 150.6 158 50.6
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 4.0e-32 143.7 155 51.0
BcaC01g04920 Brassica carinata HOM05D005606 ORTHO05D006446 2.2e-30 137.9 128 63.3
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 4.9e-30 136.7 123 60.2
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 1.9e-29 134.8 117 59.8
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 4.2e-29 133.7 181 44.8
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 1.0e-27 129.0 143 51.0
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 2.5e-26 124.4 261 38.3
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 5.7e-18 96.7 192 35.9
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 2.8e-17 94.4 235 34.5
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 4.8e-17 93.6 120 47.5
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 8.2e-17 92.8 163 40.5
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 7.2e-13 79.7 109 46.8
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 8.2e-09 66.2 91 41.8
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 8.2e-09 66.2 91 41.8


User provided reference genes

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