Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR066100 Cardamine hirsuta HOM05D009038 ORTHO05D010897 2.6e-182 642.5 484 100.0
Sp5g28090 Schrenkiella parvula HOM05D009038 ORTHO05D010897 1.7e-93 347.4 505 46.7
AL2G32880 Arabidopsis lyrata HOM05D009038 ORTHO05D010897 4.6e-86 322.8 629 39.3
Carub.0002s1990 Capsella rubella HOM05D009038 ORTHO05D010897 1.4e-79 301.2 635 39.5
Thhalv10018751m.g Eutrema salsugineum HOM05D009038 ORTHO05D010897 4.6e-78 296.2 506 44.3
AT1G73130 Arabidopsis thaliana HOM05D009038 ORTHO05D010897 9.9e-73 278.5 655 43.4
BolC2t09109H Brassica oleracea HOM05D009038 ORTHO05D010897 1.4e-58 231.5 489 38.2
C02p30590 Brassica napus HOM05D009038 ORTHO05D010897 3.1e-58 230.3 489 38.0
A02p18460 Brassica napus HOM05D009038 ORTHO05D010897 6.0e-54 216.1 489 37.2
BraA02t06885Z Brassica rapa HOM05D009038 ORTHO05D010897 6.0e-54 216.1 489 37.2
Aa31LG4G3400 Aethionema arabicum HOM05D009038 ORTHO05D010897 4.8e-43 179.9 498 33.3
AL1G30140 Arabidopsis lyrata HOM05D009038 ORTHO05D010897 3.5e-30 137.1 189 49.2
AT1G17780 Arabidopsis thaliana HOM05D009038 ORTHO05D010897 4.6e-30 136.7 184 45.7
CARHR018390 Cardamine hirsuta HOM05D009038 ORTHO05D010897 1.6e-27 128.3 172 45.9
Sp1g15860 Schrenkiella parvula HOM05D009038 ORTHO05D010897 5.3e-26 123.2 502 27.7
THA.LOC104823260 Tarenaya hassleriana HOM05D009038 ORTHO05D010897 5.0e-24 116.7 237 40.5
AT2G16575 Arabidopsis thaliana HOM05D009038 ORTHO05D010897 6.5e-24 116.3 143 46.9
A08p30740 Brassica napus HOM05D009038 ORTHO05D010897 1.1e-23 115.5 217 38.2
Carub.0001s1751 Capsella rubella HOM05D009038 ORTHO05D010897 1.9e-23 114.8 178 43.8
BcaC07g38888 Brassica carinata HOM05D009038 ORTHO05D010897 2.5e-23 114.4 166 45.2
C08p18180 Brassica napus HOM05D009038 ORTHO05D010897 2.5e-23 114.4 212 39.2
BolC8t49453H Brassica oleracea HOM05D009038 ORTHO05D010897 2.5e-23 114.4 212 39.2
BraA08t35004Z Brassica rapa HOM05D009038 ORTHO05D010897 7.2e-23 112.8 160 44.4
THA.LOC104812203 Tarenaya hassleriana HOM05D009038 ORTHO05D010897 1.2e-17 95.5 234 35.0
Aa31LG7G2600 Aethionema arabicum HOM05D009038 ORTHO05D010897 2.5e-15 87.8 86 55.8
Duzib213G0674 Durio zibethinus HOM05D008023 ORTHO05D002944 1.4e-13 82.0 130 40.8
Duzib170G0431 Durio zibethinus HOM05D008023 ORTHO05D002944 3.0e-13 80.9 116 43.1
Cpa.g.sc131.62 Carica papaya HOM05D008023 ORTHO05D002944 4.4e-12 77.0 114 43.9
Thecc.07G105200 Theobroma cacao HOM05D008023 ORTHO05D002944 9.7e-12 75.9 211 33.2
Manes.03G103000 Manihot esculenta HOM05D008023 ORTHO05D002944 1.3e-11 75.5 124 39.5
Gohir.D11G306100 Gossypium hirsutum HOM05D008023 ORTHO05D002944 1.7e-11 75.1 130 37.7
Ciclev10008068m.g Citrus clementina HOM05D008023 ORTHO05D002944 2.2e-11 74.7 112 39.3
CANSAT35G0556 Cannabis sativa HOM05D008023 ORTHO05D010897 1.1e-10 72.4 186 31.7
Glyma.06G231200 Glycine max HOM05D008023 ORTHO05D002944 1.4e-10 72.0 234 28.6
CsaV3_4G033230 Cucumis sativus L. HOM05D008023 ORTHO05D010897 3.1e-10 70.9 103 41.7
MELO3C025631.2 Cucumis melo HOM05D008023 ORTHO05D002944 5.3e-10 70.1 84 46.4
ClCG11G017550 Citrullus lanatus HOM05D008023 ORTHO05D002944 1.5e-09 68.6 84 44.0
MD11G1259700 Malus domestica HOM05D008023 ORTHO05D002944 1.5e-09 68.6 84 45.2
QL08p026875 Quercus lobata HOM05D008023 ORTHO05D002944 2.0e-09 68.2 153 33.3
GSVIVG01014227001 Vitis vinifera HOM05D008023 ORTHO05D002944 2.0e-09 68.2 111 37.8
Gohir.D05G344300 Gossypium hirsutum HOM05D008023 ORTHO05D002944 3.5e-09 67.4 130 39.2
Gorai.009G372300 Gossypium raimondii HOM05D008023 ORTHO05D002944 3.5e-09 67.4 130 39.2
FAN25G1709 Fragaria x ananassa HOM05D008023 ORTHO05D002944 1.3e-08 65.5 93 41.9
Psat4g175400 Pisum sativum HOM05D008023 ORTHO05D002944 1.3e-08 65.5 92 41.3
Prupe.4G170200 Prunus persica HOM05D008023 ORTHO05D002944 1.3e-08 65.5 228 27.2
Ca_23071_v3 Cicer arietinum L. HOM05D008023 ORTHO05D002944 1.7e-08 65.1 85 42.4
Cc05_g11360 Coffea canephora HOM05D008023 ORTHO05D002944 1.7e-08 65.1 212 30.2
Lalb_Chr19g0133891 Lupinus albus HOM05D008023 ORTHO05D002944 1.7e-08 65.1 88 40.9
MD03G1240400 Malus domestica HOM05D008023 ORTHO05D002944 1.7e-08 65.1 84 42.9
FAN21G3564 Fragaria x ananassa HOM05D008023 ORTHO05D002944 2.9e-08 64.3 93 40.9
Medtr8g463800 Medicago truncatula HOM05D008023 ORTHO05D002944 2.9e-08 64.3 88 43.2
TPR.G12029 Trifolium pratense HOM05D008023 ORTHO05D002944 2.9e-08 64.3 88 42.0
Cfa019590 Carpinus fangiana HOM05D008023 ORTHO05D002944 6.5e-08 63.2 268 28.0
FvH4_3g18640 Fragaria vesca HOM05D008023 ORTHO05D002944 6.5e-08 63.2 93 39.8
FAN11G0626 Fragaria x ananassa HOM05D008023 ORTHO05D002944 6.5e-08 63.2 93 39.8
Lj3g0002978 Lotus japonicus HOM05D008023 ORTHO05D002944 6.5e-08 63.2 176 27.8
Gohir.A04G038800 Gossypium hirsutum HOM05D008023 ORTHO05D002944 1.1e-07 62.4 95 43.2
TWI39G0037 Tripterygium wilfordii HOM05D008023 ORTHO05D002944 1.1e-07 62.4 84 41.7
VMungo1127G0722 Vigna mungo HOM05D008023 ORTHO05D002944 1.1e-07 62.4 91 42.9
Manes.15G092100 Manihot esculenta HOM05D008023 ORTHO05D002944 1.5e-07 62.0 172 29.7
RcHm_v2.0_Chr5g0031461 Rosa chinensis HOM05D008023 ORTHO05D002944 1.5e-07 62.0 158 31.0
BraA06t24527Z Brassica rapa HOM05D009038 ORTHO05D010897 1.9e-07 61.6 69 47.8
FAN16G2995 Fragaria x ananassa HOM05D008023 ORTHO05D002944 1.9e-07 61.6 93 39.8
Lj1A833T49 Lonicera japonica HOM05D008023 ORTHO05D002944 1.9e-07 61.6 87 41.4
A06p13850 Brassica napus HOM05D009038 ORTHO05D010897 3.2e-07 60.8 69 46.4
Atru.chr2.2242 Acer truncatum HOM05D008023 ORTHO05D002944 4.2e-07 60.5 219 27.9
Dinv14970 Davidia involucrata HOM05D008023 ORTHO05D002944 5.5e-07 60.1 193 29.5
A06p13660 Brassica napus HOM05D009038 ORTHO05D010897 1.6e-06 58.5 69 44.9
A06p13800 Brassica napus HOM05D009038 ORTHO05D010897 1.6e-06 58.5 69 44.9
Potri.001G376800 Populus trichocarpa HOM05D008023 ORTHO05D002944 1.6e-06 58.5 148 29.1
BcaB07g33996 Brassica carinata HOM05D009038 ORTHO05D010897 2.1e-06 58.2 68 50.0
Phvul.011G159200 Phaseolus vulgaris HOM05D008023 ORTHO05D002944 2.1e-06 58.2 76 44.7
FvH4_3g25880 Fragaria vesca HOM05D008023 ORTHO05D010897 3.6e-06 57.4 60 45.0
BcaB07g34003 Brassica carinata HOM05D009038 ORTHO05D010897 4.7e-06 57.0 63 49.2
CiPaw.12G114700 Carya illinoinensis HOM05D008023 ORTHO05D002944 4.7e-06 57.0 84 40.5
Gohir.A11G287000 Gossypium hirsutum HOM05D008023 ORTHO05D002944 4.7e-06 57.0 117 35.0
PGR083G0067 Punica granatum HOM05D008023 ORTHO05D010897 8.0e-06 56.2 95 40.0


User provided reference genes

Program Settings