Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR066060 Cardamine hirsuta HOM05D007092 ORTHO05D008947 7.6e-180 633.6 305 100.0
Carub.0002s1986 Capsella rubella HOM05D007092 ORTHO05D008947 7.2e-162 573.9 307 90.2
AT1G73090 Arabidopsis thaliana HOM05D007092 ORTHO05D008947 1.4e-157 559.7 307 87.6
AL2G32840 Arabidopsis lyrata HOM05D007092 ORTHO05D008947 5.5e-154 547.7 296 88.9
Sp5g28050 Schrenkiella parvula HOM05D007092 ORTHO05D008947 1.8e-152 542.7 308 84.4
Thhalv10018923m.g Eutrema salsugineum HOM05D007092 ORTHO05D008947 5.7e-151 537.7 307 84.4
A02p18440 Brassica napus HOM05D007092 ORTHO05D008947 5.0e-147 524.6 308 83.8
BraA02t06883Z Brassica rapa HOM05D007092 ORTHO05D008947 5.0e-147 524.6 308 83.8
BolC2t09103H Brassica oleracea HOM05D007092 ORTHO05D008947 3.2e-146 521.9 307 83.1
C02p30520 Brassica napus HOM05D007092 ORTHO05D008947 5.5e-146 521.2 308 82.8
Aa31LG4G3360 Aethionema arabicum HOM05D007092 ORTHO05D008947 1.0e-139 500.4 310 77.4
THA.LOC104823333 Tarenaya hassleriana HOM05D007092 ORTHO05D008947 1.2e-111 407.1 306 67.0
MD09G1158700 Malus domestica HOM05D007092 ORTHO05D008947 4.3e-106 388.7 288 63.9
PGR102G2093 Punica granatum HOM05D007092 ORTHO05D008947 1.2e-105 387.1 263 67.7
RcHm_v2.0_Chr2g0150121 Rosa chinensis HOM05D007092 ORTHO05D008947 1.4e-104 383.6 262 66.4
QL05p083231 Quercus lobata HOM05D007092 ORTHO05D008947 3.1e-104 382.5 297 62.3
Prupe.3G167100 Prunus persica HOM05D007092 ORTHO05D008947 5.2e-104 381.7 266 66.9
Eucgr.F04011 Eucalyptus grandis HOM05D007092 ORTHO05D008947 1.3e-102 377.1 251 68.9
Dinv37796 Davidia involucrata HOM05D007092 ORTHO05D008947 1.7e-102 376.7 249 67.5
FvH4_6g37290 Fragaria vesca HOM05D007092 ORTHO05D008947 4.1e-101 372.1 267 63.7
Atru.chr1.2779 Acer truncatum HOM05D007092 ORTHO05D008947 4.6e-100 368.6 258 65.5
arahy.Tifrunner.gnm1.ann1.U4SUAB Arachis hypogaea HOM05D007092 ORTHO05D008947 4.6e-100 368.6 275 60.4
CANSAT01G0482 Cannabis sativa HOM05D007092 ORTHO05D008947 7.8e-100 367.9 265 64.5
GSVIVG01016136001 Vitis vinifera HOM05D007092 ORTHO05D008947 3.9e-99 365.5 299 58.9
Thecc.06G015800 Theobroma cacao HOM05D007092 ORTHO05D008947 5.0e-99 365.2 265 63.8
arahy.Tifrunner.gnm1.ann1.2I6Q5Y Arachis hypogaea HOM05D007092 ORTHO05D008947 8.6e-99 364.4 275 60.0
Ciclev10026125m.g Citrus clementina HOM05D007092 ORTHO05D008947 4.3e-98 362.1 251 65.7
Sopen06g022680 Solanum pennellii HOM05D007092 ORTHO05D008947 7.3e-98 361.3 249 65.1
Nitab4.5_0008628g0030 Nicotiana tabacum HOM05D007092 ORTHO05D008947 1.2e-97 360.5 249 65.1
VMungo0647G0167 Vigna mungo HOM05D007092 ORTHO05D008947 1.2e-97 360.5 272 60.3
Solyc06g063230.3 Solanum lycopersicum HOM05D007092 ORTHO05D008947 2.1e-97 359.8 249 64.7
PGSC0003DMG400026517 Solanum tuberosum HOM05D007092 ORTHO05D008947 2.8e-97 359.4 249 65.1
Nn2g12583 Nelumbo nucifera HOM05D007092 ORTHO05D008947 3.6e-97 359.0 258 65.5
Manes.01G181400 Manihot esculenta HOM05D007092 ORTHO05D008947 8.1e-97 357.8 271 62.0
Nitab4.5_0002661g0010 Nicotiana tabacum HOM05D007092 ORTHO05D008947 8.1e-97 357.8 249 63.9
CSS0038887 Camellia sinensis var. sinensis HOM05D007092 ORTHO05D008947 1.8e-96 356.7 249 64.3
FAN02G1258 Fragaria x ananassa HOM05D007092 ORTHO05D008947 5.2e-96 355.1 300 57.7
TPR.G38753 Trifolium pratense HOM05D007092 ORTHO05D008947 8.9e-96 354.4 291 54.6
Medtr4g006030 Medicago truncatula HOM05D007092 ORTHO05D008947 2.0e-95 353.2 250 62.8
Hma1.2p1_1104F.1_g257360 Hydrangea macrophylla HOM05D007092 ORTHO05D008947 3.4e-95 352.4 249 63.5
Lsat_1_v5_gn_5_137421 Lactuca sativa HOM05D007092 ORTHO05D008947 7.5e-95 351.3 249 61.8
Lalb_Chr04g0264731 Lupinus albus HOM05D007092 ORTHO05D008947 1.3e-94 350.5 251 62.9
Ca_20954_v3 Cicer arietinum L. HOM05D007092 ORTHO05D008947 3.7e-94 349.0 249 62.2
Lj3g0013116 Lotus japonicus HOM05D007092 ORTHO05D008947 3.7e-94 349.0 248 62.9
Oeu049655.1 Olea europaea HOM05D007092 ORTHO05D008947 4.9e-94 348.6 247 64.0
TAR383G0306 Trochodendron aralioides HOM05D007092 ORTHO05D008947 2.4e-93 346.3 261 64.4
HanXRQChr10g0311491 Helianthus annuus HOM05D007092 ORTHO05D008947 3.2e-93 345.9 249 61.0
CsaV3_7G033820 Cucumis sativus L. HOM05D007092 ORTHO05D008947 4.1e-93 345.5 298 56.7
Phvul.008G255700 Phaseolus vulgaris HOM05D007092 ORTHO05D008947 5.4e-93 345.1 250 60.8
Aqoxy7G03199 Aquilegia oxysepala HOM05D007092 ORTHO05D008947 2.7e-92 342.8 287 58.5
Glyma.07G003900 Glycine max HOM05D007092 ORTHO05D008947 2.7e-92 342.8 264 58.7
Sc12g0010950 Simmondsia chinensis HOM05D007092 ORTHO05D008947 1.7e-91 340.1 265 59.2
Duzib160G0445 Durio zibethinus HOM05D007092 ORTHO05D008947 5.1e-91 338.6 251 64.1
Actinidia21869 Actinidia chinensis HOM05D007092 ORTHO05D008947 1.1e-90 337.4 288 56.2
Haze_15817 Corylus avellana HOM05D007092 ORTHO05D008947 2.5e-90 336.3 265 61.5
ECA234G1665 Erigeron canadensis HOM05D007092 ORTHO05D008947 5.6e-90 335.1 249 58.6
ClCG09G001510 Citrullus lanatus HOM05D007092 ORTHO05D008947 9.5e-90 334.3 318 54.4
Gohir.D10G007300 Gossypium hirsutum HOM05D007092 ORTHO05D008947 1.6e-89 333.6 232 65.1
Gohir.A10G007400 Gossypium hirsutum HOM05D007092 ORTHO05D008947 2.1e-89 333.2 232 65.5
Gorai.011G008000 Gossypium raimondii HOM05D007092 ORTHO05D008947 3.6e-89 332.4 232 64.7
Cc04_g00380 Coffea canephora HOM05D007092 ORTHO05D008947 4.7e-89 332.0 249 61.4
PSO063G1240 Papaver somniferum HOM05D007092 ORTHO05D008947 6.2e-89 331.6 250 61.6
COL.COLO4_22872 Corchorus olitorius HOM05D007092 ORTHO05D008947 8.1e-89 331.3 248 62.9
Peaxi162Scf00207g01537 Petunia axillaris HOM05D007092 ORTHO05D008947 2.3e-88 329.7 271 55.7
Sabra10G0194500 Salix brachista HOM05D007092 ORTHO05D008947 5.2e-88 328.6 265 60.8
ATR0580G293 Amborella trichopoda HOM05D007092 ORTHO05D008947 1.2e-87 327.4 280 56.1
Potri.010G250100 Populus trichocarpa HOM05D007092 ORTHO05D008947 1.2e-87 327.4 254 61.4
SalBow6G0042 Salvia bowleyana HOM05D007092 ORTHO05D008947 2.9e-86 322.8 250 57.6
Migut.I01177 Erythranthe guttata HOM05D007092 ORTHO05D008947 1.4e-85 320.5 247 59.9
EL10Ac7g18225 Beta vulgaris HOM05D007092 ORTHO05D008947 5.4e-85 318.5 261 57.1
MBI14_g30703_MAGBIO Magnolia biondii HOM05D007092 ORTHO05D008947 1.3e-83 313.9 319 50.5
Sed0004999 Sechium edule HOM05D007092 ORTHO05D008947 3.0e-83 312.8 274 56.2
AUR62025584 Chenopodium quinoa HOM05D007092 ORTHO05D008947 5.6e-82 308.5 288 52.8
MELO3C024294.2 Cucumis melo HOM05D007092 ORTHO05D008947 1.4e-77 293.9 268 55.2
HPP92_017449 Vanilla planifolia HOM05D007092 ORTHO05D008947 1.6e-76 290.4 241 53.5
Lj6C21G9 Lonicera japonica HOM05D007092 ORTHO05D008947 5.6e-74 282.0 274 51.1
Hund18612 Selenicereus undatus HOM05D007092 ORTHO05D008947 1.6e-73 280.4 256 54.3
unitig_748.g7475 Utricularia gibba HOM05D007092 ORTHO05D008947 1.1e-72 277.7 253 53.4
arahy.Tifrunner.gnm1.ann1.65RD4S Arachis hypogaea HOM05D007092 ORTHO05D008947 1.3e-70 270.8 204 57.8
AUR62001368 Chenopodium quinoa HOM05D007092 ORTHO05D008947 1.6e-65 253.8 261 48.3
SGA_v2.0_scaffold122G33289 Striga asiatica HOM05D002895 ORTHO05D003286 1.2e-63 247.7 202 55.0
CDE07G2035 Ceratophyllum demersum HOM05D007092 ORTHO05D008947 9.9e-63 244.6 272 46.7
Lj6C3G1 Lonicera japonica HOM05D000076 ORTHO05D001279 1.8e-59 233.8 245 49.8
AagrBONN_evm.TU.Sc2ySwM_344.2112 Anthoceros agrestis HOM05D007092 ORTHO05D008947 4.9e-54 215.7 247 42.1
C02p30540 Brassica napus HOM05D007092 ORTHO05D008947 1.9e-53 213.8 104 92.3
Mapoly0073s0046 Marchantia polymorpha HOM05D007092 ORTHO05D008947 6.7e-51 205.3 258 41.9
Hund18613 Selenicereus undatus HOM05D007092 ORTHO05D008947 1.1e-48 198.0 179 48.6
Pp3c13_10570 Physcomitrium patens HOM05D007092 ORTHO05D008947 5.0e-46 189.1 266 38.0
Psat7g263560 Pisum sativum HOM05D007092 ORTHO05D008947 5.0e-46 189.1 169 53.3
Cfa021192 Carpinus fangiana HOM05D007092 ORTHO05D008947 3.2e-45 186.4 130 60.8
FAN09G2007 Fragaria x ananassa HOM05D007092 ORTHO05D008947 1.8e-43 180.6 141 63.8
SMO230G0107 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 5.9e-39 165.6 246 36.6
arahy.Tifrunner.gnm1.ann1.NXC5E0 Arachis hypogaea HOM05D007092 ORTHO05D008947 3.8e-38 162.9 107 61.7
arahy.Tifrunner.gnm1.ann1.DEI7NY Arachis hypogaea HOM05D007092 ORTHO05D008947 2.4e-32 143.7 82 69.5
RcHm_v2.0_Chr1g0381181 Rosa chinensis HOM05D007092 ORTHO05D008947 1.9e-29 134.0 130 55.4
Glyma.08G222700 Glycine max HOM05D007092 ORTHO05D008947 1.5e-26 124.4 79 64.6
SEGI_20536 Sequoiadendron giganteum HOM05D007092 ORTHO05D008947 1.2e-23 114.8 84 59.5
SMO336G0036 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 3.5e-23 113.2 278 28.1
BcaB05g22026 Brassica carinata HOM05D007092 ORTHO05D008947 1.6e-20 104.4 68 67.6
Lj6A3T47 Lonicera japonica HOM05D007092 ORTHO05D008947 2.1e-20 104.0 65 64.6
BcaC07g40307 Brassica carinata HOM05D007092 ORTHO05D008947 1.0e-19 101.7 60 73.3
arahy.Tifrunner.gnm1.ann1.BLVE7G Arachis hypogaea HOM05D007092 ORTHO05D008947 2.3e-19 100.5 51 78.4
arahy.Tifrunner.gnm1.ann1.LQFB73 Arachis hypogaea HOM05D007092 ORTHO05D008947 2.3e-19 100.5 51 78.4
Cpa.g.sc1009.2 Carica papaya HOM05D007092 ORTHO05D008947 2.2e-17 94.0 67 65.7
arahy.Tifrunner.gnm1.ann1.QYJ7WZ Arachis hypogaea HOM05D007092 ORTHO05D008947 1.1e-13 81.6 66 59.1
arahy.Tifrunner.gnm1.ann1.TPQB3Q Arachis hypogaea HOM05D007092 ORTHO05D008947 1.1e-13 81.6 66 59.1
BcaB04g17422 Brassica carinata HOM05D007092 ORTHO05D008947 3.2e-13 80.1 49 73.5
C03p19630 Brassica napus HOM05D000267 ORTHO05D020178 1.3e-09 68.2 49 65.3
C03p03960 Brassica napus HOM05D000267 ORTHO05D020178 2.2e-09 67.4 49 65.3
BolC3t12933H Brassica oleracea HOM05D000267 ORTHO05D020178 2.2e-09 67.4 49 65.3
arahy.Tifrunner.gnm1.ann1.KBSP04 Arachis hypogaea HOM05D002221 ORTHO05D002626 1.1e-08 65.1 58 46.6
arahy.Tifrunner.gnm1.ann1.R6H1XR Arachis hypogaea HOM05D002221 ORTHO05D002626 1.1e-08 65.1 58 46.6
Cpa.g.sc3948.1 Carica papaya HOM05D007092 ORTHO05D008947 2.0e-07 60.8 32 78.1
Hund18614 Selenicereus undatus HOM05D007092 ORTHO05D008947 4.5e-07 59.7 41 61.0
Actinidia21637 Actinidia chinensis HOM05D007092 ORTHO05D008947 5.9e-07 59.3 79 38.0
Actinidia38794 Actinidia chinensis HOM05D007092 ORTHO05D008947 1.0e-06 58.5 54 50.0
SEGI_02665 Sequoiadendron giganteum HOM05D007092 ORTHO05D050975 2.9e-06 57.0 78 43.6
SEGI_38624 Sequoiadendron giganteum HOM05D007092 ORTHO05D050975 6.5e-06 55.8 46 52.2
arahy.Tifrunner.gnm1.ann1.AT2CXE Arachis hypogaea HOM05D007092 ORTHO05D008947 8.6e-06 55.5 43 48.8


User provided reference genes

Program Settings