Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 4.3e-30 134.4 91 100.0
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 1.4e-17 92.8 92 78.3
C06p34720 Brassica napus HOM05D003238 ORTHO05D003571 5.5e-17 90.9 92 72.8
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 1.6e-16 89.4 92 64.1
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 1.6e-16 89.4 92 64.1
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 3.6e-16 88.2 91 72.5
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 4.6e-16 87.8 96 60.4
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 6.1e-16 87.4 91 74.7
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 1.4e-15 86.3 91 56.0
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 1.8e-12 75.9 92 67.4
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 6.9e-12 73.9 88 68.2
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 1.0e-10 70.1 91 67.0
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.3e-10 69.7 85 62.4
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.3e-10 69.7 85 62.4
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 1.3e-10 69.7 87 65.5
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 1.3e-10 69.7 89 65.2
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.7e-10 69.3 90 62.2
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.7e-10 69.3 89 69.7
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 1.7e-10 69.3 90 64.4
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 2.2e-10 68.9 91 65.9
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 2.9e-10 68.6 81 70.4
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 2.9e-10 68.6 91 62.6
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 3.8e-10 68.2 89 65.2
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 3.8e-10 68.2 85 67.1
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 5.0e-10 67.8 87 65.5
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 8.5e-10 67.0 92 65.2
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 8.5e-10 67.0 83 61.4
Aa31LG4G3050 Aethionema arabicum HOM05D003238 ORTHO05D003571 2.5e-09 65.5 83 65.1
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 2.5e-09 65.5 78 66.7
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 2.5e-09 65.5 88 65.9
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 3.2e-09 65.1 86 67.4
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 3.2e-09 65.1 57 63.2
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 3.2e-09 65.1 85 68.2
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 4.2e-09 64.7 78 69.2
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 5.5e-09 64.3 63 61.9
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 5.5e-09 64.3 86 65.1
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 7.2e-09 63.9 89 65.2
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 7.2e-09 63.9 91 65.9
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 9.4e-09 63.5 82 68.3
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 9.4e-09 63.5 87 62.1
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 1.2e-08 63.2 89 62.9
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 1.2e-08 63.2 93 61.3
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 1.2e-08 63.2 87 62.1
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 1.2e-08 63.2 57 57.9
Nitab4.5_0009992g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.6e-08 62.8 56 60.7
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 2.1e-08 62.4 59 59.3
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 2.1e-08 62.4 81 67.9
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 2.1e-08 62.4 90 63.3
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 2.7e-08 62.0 58 55.2
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 3.6e-08 61.6 82 67.1
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 4.7e-08 61.2 63 58.7
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 4.7e-08 61.2 87 60.9
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 4.7e-08 61.2 87 58.6
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 4.7e-08 61.2 78 66.7
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 6.1e-08 60.8 53 62.3
Duzib168G0217 Durio zibethinus HOM05D003238 ORTHO05D003571 7.9e-08 60.5 64 56.2
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 7.9e-08 60.5 91 64.8
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 1.0e-07 60.1 84 59.5
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 1.0e-07 60.1 86 62.8
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.0e-07 60.1 55 65.5
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 1.4e-07 59.7 88 60.2
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 1.4e-07 59.7 59 59.3
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 1.8e-07 59.3 50 64.0
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 1.8e-07 59.3 90 58.9
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 2.3e-07 58.9 84 40.5
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.3e-07 58.9 56 55.4
PSO210G2488 Papaver somniferum HOM05D003238 ORTHO05D003571 3.0e-07 58.5 90 58.9
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 3.0e-07 58.5 87 59.8
PSO210G1081 Papaver somniferum HOM05D003238 ORTHO05D003571 3.9e-07 58.2 90 58.9
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 3.9e-07 58.2 86 64.0
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 3.9e-07 58.2 75 69.3
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 5.1e-07 57.8 84 40.5
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 5.1e-07 57.8 61 52.5
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 5.1e-07 57.8 85 63.5
Atru.chr7.1621 Acer truncatum HOM05D003238 ORTHO05D003571 8.8e-07 57.0 59 57.6
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 8.8e-07 57.0 83 59.0
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 8.8e-07 57.0 86 57.0
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 8.8e-07 57.0 82 63.4
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 1.1e-06 56.6 91 58.2
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 1.1e-06 56.6 45 66.7
vmacro23045 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 1.1e-06 56.6 58 56.9
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 1.5e-06 56.2 82 43.9
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 2.0e-06 55.8 92 40.2
Manes.16G100500 Manihot esculenta HOM05D003238 ORTHO05D003571 2.0e-06 55.8 79 62.0
ATR0789G083 Amborella trichopoda HOM05D003238 ORTHO05D003571 2.6e-06 55.5 56 57.1
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 2.6e-06 55.5 47 59.6
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 3.3e-06 55.1 89 59.6
TPR.G27679 Trifolium pratense HOM05D003238 ORTHO05D003571 3.3e-06 55.1 91 64.8
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 3.3e-06 55.1 50 60.0
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 4.4e-06 54.7 86 61.6
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 4.4e-06 54.7 79 54.4
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 4.4e-06 54.7 81 56.8
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 5.7e-06 54.3 50 62.0
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 7.4e-06 53.9 75 64.0
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 7.4e-06 53.9 87 57.5
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 7.4e-06 53.9 55 56.4
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 7.4e-06 53.9 92 57.6
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 9.7e-06 53.5 78 59.0
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 9.7e-06 53.5 60 56.7
HPP92_005498 Vanilla planifolia HOM05D003238 ORTHO05D003571 9.7e-06 53.5 49 59.2


User provided reference genes

Program Settings