Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR065500 Cardamine hirsuta HOM05D005576 ORTHO05D007010 0.0e+00 1930.2 989 100.0
Thhalv10018070m.g Eutrema salsugineum HOM05D005576 ORTHO05D007010 0.0e+00 1808.9 989 92.6
AT1G72560 Arabidopsis thaliana HOM05D005576 ORTHO05D007010 0.0e+00 1781.1 989 91.4
AL2G32250 Arabidopsis lyrata HOM05D005576 ORTHO05D007010 0.0e+00 1733.4 989 89.5
Aa31LG4G2910 Aethionema arabicum HOM05D005576 ORTHO05D007010 0.0e+00 1722.2 990 87.8
Sp5g27640 Schrenkiella parvula HOM05D005576 ORTHO05D007010 0.0e+00 1716.8 989 89.0
Carub.0002s1942 Capsella rubella HOM05D005576 ORTHO05D007010 0.0e+00 1707.2 989 88.0
THA.LOC104808055 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1688.3 990 85.4
C06p46920 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1658.7 992 85.6
BolC6t39733H Brassica oleracea HOM05D005576 ORTHO05D007010 0.0e+00 1658.3 992 85.4
A07p38760 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1650.6 991 85.1
BraA07t31429Z Brassica rapa HOM05D005576 ORTHO05D007010 0.0e+00 1642.9 992 84.9
THA.LOC104812251 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1584.7 990 80.3
Atru.chr1.3999 Acer truncatum HOM05D005576 ORTHO05D007010 0.0e+00 1483.4 990 74.7
Dinv20428 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1468.4 969 75.9
Manes.11G019400 Manihot esculenta HOM05D005576 ORTHO05D007010 0.0e+00 1463.4 993 73.5
COL.COLO4_30746 Corchorus olitorius HOM05D005576 ORTHO05D007010 0.0e+00 1460.7 990 73.8
Haze_16039 Corylus avellana HOM05D005576 ORTHO05D007010 0.0e+00 1454.5 990 73.2
Sopen03g041140 Solanum pennellii HOM05D005576 ORTHO05D007010 0.0e+00 1454.5 991 73.0
PGSC0003DMG400022883 Solanum tuberosum HOM05D005576 ORTHO05D007010 0.0e+00 1453.3 991 72.9
Prupe.3G039600 Prunus persica HOM05D005576 ORTHO05D007010 0.0e+00 1452.6 990 74.0
Actinidia26024 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1450.3 990 72.2
Thecc.06G121300 Theobroma cacao HOM05D005576 ORTHO05D007010 0.0e+00 1449.1 990 73.9
TAR626G1694 Trochodendron aralioides HOM05D005576 ORTHO05D007010 0.0e+00 1449.1 992 72.0
CAN.G668.41 Capsicum annuum HOM05D005576 ORTHO05D007010 0.0e+00 1446.0 990 72.4
Nitab4.5_0004422g0040 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1446.0 979 73.3
GSVIVG01016742001 Vitis vinifera HOM05D005576 ORTHO05D007010 0.0e+00 1443.7 993 72.9
Nitab4.5_0002898g0010 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1442.6 979 72.9
QL05p004145 Quercus lobata HOM05D005576 ORTHO05D007010 0.0e+00 1441.4 990 72.2
Cc04_g01260 Coffea canephora HOM05D005576 ORTHO05D007010 0.0e+00 1433.3 991 71.1
TWI31G0259 Tripterygium wilfordii HOM05D005576 ORTHO05D007010 0.0e+00 1430.2 990 71.0
Gorai.011G059500 Gossypium raimondii HOM05D005576 ORTHO05D007010 0.0e+00 1417.9 990 72.2
CiPaw.01G218000 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1417.1 990 71.5
Duzib235G0347 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1416.0 990 71.7
MD09G1181500 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1413.3 990 71.7
Potri.003G066200 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1411.0 995 70.1
Gohir.A10G053800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1408.3 990 71.8
Dinv37863 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1407.5 1015 70.5
Lsat_1_v5_gn_4_93500 Lactuca sativa HOM05D005576 ORTHO05D007010 0.0e+00 1407.5 985 71.3
RcHm_v2.0_Chr2g0145781 Rosa chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1407.5 985 71.4
HanXRQChr09g0276901 Helianthus annuus HOM05D005576 ORTHO05D007010 0.0e+00 1405.2 991 71.7
Peaxi162Scf00038g02138 Petunia axillaris HOM05D005576 ORTHO05D007010 0.0e+00 1404.8 1073 67.2
Nn8g38631 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1403.7 992 70.4
FvH4_6g34890 Fragaria vesca HOM05D005576 ORTHO05D007010 0.0e+00 1402.1 985 71.0
MD17G1167700 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1402.1 990 71.1
vmacro22036 Vaccinium macrocarpon HOM05D005576 ORTHO05D007010 0.0e+00 1401.0 992 71.0
Aqoxy7G04073 Aquilegia oxysepala HOM05D005576 ORTHO05D007010 0.0e+00 1399.8 993 70.4
VMungo1309G3067 Vigna mungo HOM05D005576 ORTHO05D007010 0.0e+00 1399.4 991 71.4
CANSAT56G3183 Cannabis sativa HOM05D005576 ORTHO05D007010 0.0e+00 1399.0 990 70.5
Potri.001G168100 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1396.7 993 70.3
Lalb_Chr15g0076791 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1396.3 991 71.1
FAN09G4405 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1394.4 985 70.7
CiPaw.02G135100 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1389.8 990 69.4
Lalb_Chr04g0261101 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1389.8 991 70.4
Migut.I01082 Erythranthe guttata HOM05D005576 ORTHO05D007010 0.0e+00 1388.2 992 70.2
CsaV3_7G034420 Cucumis sativus L. HOM05D005576 ORTHO05D007010 0.0e+00 1387.1 991 69.8
ClCG09G001010 Citrullus lanatus HOM05D005576 ORTHO05D007010 0.0e+00 1385.9 1004 69.5
Sc15g0000400 Simmondsia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1384.4 992 69.5
Nn6g35707 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1384.0 992 69.6
MELO3C024350.2 Cucumis melo HOM05D005576 ORTHO05D007010 0.0e+00 1382.9 991 69.7
Ciclev10024809m.g Citrus clementina HOM05D005576 ORTHO05D007010 0.0e+00 1381.3 990 71.1
Rhsim12G0210100 Rhododendron simsii HOM05D005576 ORTHO05D007010 0.0e+00 1378.6 969 71.5
ECA232G2029 Erigeron canadensis HOM05D005576 ORTHO05D007010 0.0e+00 1377.8 990 69.9
Glyma.19G263400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1377.8 990 70.8
CSS0000574 Camellia sinensis var. sinensis HOM05D005576 ORTHO05D007010 0.0e+00 1377.5 994 69.8
Sed0003060 Sechium edule HOM05D005576 ORTHO05D007010 0.0e+00 1374.4 991 69.7
Lj5C36G17 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1372.8 985 69.4
Lj1g0011724 Lotus japonicus HOM05D005576 ORTHO05D007010 0.0e+00 1371.3 990 69.1
Gohir.D10G055800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1364.7 960 71.7
Sabra03G0038700 Salix brachista HOM05D005576 ORTHO05D007010 0.0e+00 1363.2 963 69.9
EL10Ac7g16417 Beta vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1362.1 993 69.4
TPR.G28874 Trifolium pratense HOM05D005576 ORTHO05D007010 0.0e+00 1362.1 990 69.5
Ca_09568_v3 Cicer arietinum L. HOM05D005576 ORTHO05D007010 0.0e+00 1358.6 990 69.3
Ah.08g216850 Amaranthus hybridus HOM05D005576 ORTHO05D007010 0.0e+00 1358.2 992 68.9
PGR102G0536 Punica granatum HOM05D005576 ORTHO05D007010 0.0e+00 1357.0 997 70.0
Psat3g000040 Pisum sativum HOM05D005576 ORTHO05D007010 0.0e+00 1355.9 990 69.1
MBI13_g12059_MAGBIO Magnolia biondii HOM05D005576 ORTHO05D007010 0.0e+00 1354.0 994 68.3
DCAR_026415 Daucus carota HOM05D005576 ORTHO05D007010 0.0e+00 1349.0 960 69.7
SGA_v2.0_scaffold71G23839 Striga asiatica HOM05D005576 ORTHO05D007010 0.0e+00 1343.9 988 68.6
Oeu000412.2 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1342.0 992 69.0
MSTRG.4792 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1322.8 993 67.4
Glyma.03G264400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1321.6 991 68.4
Duzib160G0875 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1317.4 993 67.8
Medtr7g117565 Medicago truncatula HOM05D005576 ORTHO05D007010 0.0e+00 1317.4 995 66.9
SalBow6G0288 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1313.9 980 67.1
SalBow6G5091 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1313.9 980 67.1
Oeu015487.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1311.2 962 68.2
PSO421G0066 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1311.2 1004 65.4
Actinidia25327 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1300.4 895 71.4
FAN14G0396 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1293.5 929 70.3
MSTRG.10949 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1291.2 992 66.4
arahy.Tifrunner.gnm1.ann1.E27NE4 Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1290.8 995 66.1
FAN02G3375 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1283.5 985 66.2
arahy.Tifrunner.gnm1.ann1.W8MD5J Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1278.8 1025 64.5
PSO063G0826 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1273.8 998 64.3
Solyc03g122370.4 Solanum lycopersicum HOM05D005576 ORTHO05D007010 0.0e+00 1270.0 990 66.3
Hund18687 Selenicereus undatus HOM05D005576 ORTHO05D007010 0.0e+00 1244.6 939 67.6
AUR62001476 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1218.4 963 64.2
ATR0598G079 Amborella trichopoda HOM05D005576 ORTHO05D007010 0.0e+00 1217.2 971 62.4
CDE05G1788 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 0.0e+00 1181.4 991 59.8
Lj9A532T67 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1176.8 911 66.8
Oeu015486.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1148.3 862 67.6
AUR62009889 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1099.3 998 57.9
Phvul.009G263000 Phaseolus vulgaris HOM05D005576 ORTHO05D007010 1.7e-297 1026.2 724 72.7
CDE11G0151 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 2.0e-293 1012.7 992 53.3
Eucgr.F04406 Eucalyptus grandis HOM05D005576 ORTHO05D007010 3.3e-293 1011.9 911 58.9
Mapoly0019s0146 Marchantia polymorpha HOM05D005576 ORTHO05D007010 4.0e-278 961.8 993 49.4
Pp3c12_21910 Physcomitrium patens HOM05D005576 ORTHO05D007010 6.7e-278 961.1 996 48.8
Zm00001eb109040 Zea mays HOM05D005576 ORTHO05D007010 4.8e-276 954.9 1000 51.2
Zm00001eb327340 Zea mays HOM05D005576 ORTHO05D007010 8.2e-276 954.1 1000 51.3
Os07g0613300 Oryza sativa ssp. japonica HOM05D005576 ORTHO05D007010 5.5e-272 941.4 1002 51.6
unitig_899.g14764 Utricularia gibba HOM05D005576 ORTHO05D007010 2.9e-257 892.5 842 56.2
Actinidia27733 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.0e-253 879.8 611 71.8
SMO141G0108 Selaginella moellendorffii HOM05D005576 ORTHO05D007010 1.4e-251 873.6 985 45.8
HPP92_026306 Vanilla planifolia HOM05D005576 ORTHO05D007010 7.8e-250 867.8 743 60.4
Actinidia26822 Actinidia chinensis HOM05D005576 ORTHO05D007010 6.6e-249 864.8 598 71.9
SEGI_13199 Sequoiadendron giganteum HOM05D005576 ORTHO05D007010 1.0e-241 840.9 807 54.2
FAN05G3283 Fragaria x ananassa HOM05D005576 ORTHO05D007010 1.9e-240 836.6 607 69.5
AagrBONN_evm.TU.Sc2ySwM_344.1866 Anthoceros agrestis HOM05D005576 ORTHO05D007010 1.1e-211 741.1 912 43.1
CBR_g44922 Chara braunii HOM05D005576 ORTHO05D007010 7.1e-211 738.4 1081 38.7
Cpa.g.sc589.4 Carica papaya HOM05D005576 ORTHO05D007010 9.0e-190 668.3 427 77.3
Aa31LG4G2950 Aethionema arabicum HOM05D005576 ORTHO05D007010 9.7e-168 595.1 354 85.9
Cpa.g.sc1732.1 Carica papaya HOM05D005576 ORTHO05D007010 3.4e-144 516.9 314 79.6
Dinv20426 Davidia involucrata HOM05D005576 ORTHO05D007010 2.9e-140 503.8 304 79.6
Cre12.g496200 Chlamydomonas reinhardtii HOM05D005576 ORTHO05D007010 3.3e-123 447.2 1193 28.9
Actinidia26823 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.9e-87 327.8 263 61.2
Actinidia27734 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.9e-87 327.8 263 61.2
MCO02G354 Micromonas commoda HOM05D005576 ORTHO05D007010 1.6e-82 312.0 1076 27.1
HPP92_026305 Vanilla planifolia HOM05D005576 ORTHO05D007010 5.0e-55 220.7 240 48.8
BcaB05g24764 Brassica carinata HOM05D005576 ORTHO05D007010 9.8e-43 179.9 122 79.5
C02p30110 Brassica napus HOM05D005576 ORTHO05D007010 6.3e-42 177.2 145 64.8
PRCOL_00005439 Prasinoderma coloniale HOM05D005576 ORTHO05D007010 7.2e-38 163.7 977 23.1
BolC2t09060H Brassica oleracea HOM05D005576 ORTHO05D007010 1.0e-36 159.8 144 61.8
BcaB05g24763 Brassica carinata HOM05D000046 ORTHO05D000457 6.6e-31 140.6 85 83.5
unitig_899.g14765 Utricularia gibba HOM05D005576 ORTHO05D007010 5.7e-27 127.5 108 58.3
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 3.9e-15 88.2 53 79.2
A02p18080 Brassica napus HOM05D005576 ORTHO05D041195 3.2e-09 68.6 45 80.0
BraA02t06855Z Brassica rapa HOM05D005576 ORTHO05D041195 3.2e-09 68.6 45 80.0


User provided reference genes

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