Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 0.0e+00 1779.6 1039 100.0
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 0.0e+00 1411.7 925 84.4
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 0.0e+00 1405.6 1029 79.8
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 0.0e+00 1392.1 925 83.0
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 0.0e+00 1390.9 1022 79.8
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 0.0e+00 1359.7 916 81.6
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 0.0e+00 1324.3 1025 76.4
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 0.0e+00 1316.2 1035 75.7
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 0.0e+00 1313.1 925 80.2
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 0.0e+00 1298.5 1024 75.1
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 0.0e+00 1261.9 1026 74.3
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 0.0e+00 1219.5 1018 73.8
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 0.0e+00 1175.6 931 71.0
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 3.9e-292 1008.4 1049 58.3
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 4.0e-289 998.4 1046 60.0
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 1.5e-288 996.5 1047 60.1
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 5.8e-288 994.6 1057 57.5
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 4.6e-285 984.9 1026 58.4
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 2.3e-284 982.6 928 61.5
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 3.0e-284 982.2 1037 56.2
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 1.5e-283 979.9 927 61.7
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 4.0e-281 971.8 923 61.6
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 4.4e-280 968.4 1068 57.0
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 9.9e-280 967.2 1034 57.5
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 3.8e-279 965.3 1062 58.4
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 4.9e-279 964.9 1041 59.8
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 5.4e-278 961.4 1052 56.8
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 2.1e-277 959.5 1050 56.3
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 4.6e-277 958.4 1041 56.3
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 1.0e-276 957.2 1041 56.1
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 2.3e-276 956.1 1032 57.2
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 3.0e-276 955.7 1032 56.0
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 6.6e-276 954.5 1031 56.3
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 1.5e-275 953.4 1051 56.3
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 3.3e-275 952.2 1031 55.8
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 2.1e-274 949.5 912 60.1
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 8.1e-274 947.6 1046 55.4
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 3.1e-273 945.7 1045 57.1
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 3.4e-272 942.2 1052 56.7
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 5.8e-272 941.4 961 58.2
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 7.6e-272 941.0 1047 58.6
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 9.9e-272 940.6 1049 55.8
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 2.9e-271 939.1 1057 55.3
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 1.1e-270 937.2 1015 56.4
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 5.4e-270 934.9 1052 58.0
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 1.6e-269 933.3 1048 58.5
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 2.7e-269 932.6 865 62.5
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 3.5e-269 932.2 1034 58.8
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 1.0e-268 930.6 1042 57.5
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 6.6e-268 927.9 1026 58.3
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 1.3e-266 923.7 1046 55.4
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 2.8e-266 922.5 922 58.7
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.8e-265 919.8 917 58.3
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 5.8e-264 914.8 1078 53.6
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 6.4e-263 911.4 1070 55.9
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 2.4e-262 909.4 1042 55.7
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 4.2e-262 908.7 928 58.2
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 7.1e-262 907.9 1058 53.2
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 4.6e-261 905.2 1042 53.6
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 1.0e-260 904.0 1040 54.1
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 1.3e-260 903.7 1037 54.7
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 3.0e-260 902.5 1017 54.6
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 3.7e-258 895.6 930 58.5
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 1.8e-257 893.3 1026 53.5
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 6.9e-257 891.3 930 58.5
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 2.6e-256 889.4 1019 55.6
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 7.6e-256 887.9 1042 52.7
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 2.9e-255 885.9 1076 51.4
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 3.8e-255 885.6 1041 54.8
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 6.5e-255 884.8 933 55.9
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 8.4e-255 884.4 1029 54.3
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 1.6e-253 880.2 955 55.9
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 4.3e-251 872.1 1048 51.0
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 1.6e-250 870.2 1032 52.5
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 2.4e-249 866.3 1043 51.8
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 2.0e-248 863.2 1053 54.1
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 4.5e-248 862.1 881 56.6
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 7.6e-248 861.3 1031 51.7
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 1.6e-245 853.6 1014 52.6
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 1.0e-244 850.9 1191 48.2
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 1.3e-244 850.5 1029 52.5
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 2.5e-243 846.3 1040 52.6
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.8e-241 840.1 928 56.1
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 4.1e-241 839.0 1039 50.5
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.3e-239 833.9 957 52.5
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 6.5e-239 831.6 888 55.5
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 9.4e-238 827.8 887 52.6
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 1.1e-235 820.8 1039 52.3
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 2.2e-234 816.6 582 79.7
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 1.1e-233 814.3 1040 51.1
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 9.1e-233 811.2 917 53.3
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.5e-227 793.9 892 55.0
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 7.4e-227 791.6 1056 50.4
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 5.9e-224 781.9 1041 50.9
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 7.7e-224 781.6 805 61.4
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 1.6e-221 773.9 1028 46.9
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 2.4e-217 760.0 1039 49.0
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 5.3e-217 758.8 1031 50.2
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 6.3e-210 735.3 886 54.0
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 2.7e-208 729.9 1050 46.7
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 4.1e-201 706.1 602 65.3
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 8.0e-197 691.8 629 62.0
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 6.8e-196 688.7 691 58.9
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.9e-185 654.1 632 60.0
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 1.6e-181 641.0 930 42.9
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 2.4e-177 627.1 861 46.6
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 7.3e-174 615.5 993 41.2
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 1.8e-172 610.9 1034 42.0
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 5.6e-166 589.3 954 41.4
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 4.5e-147 526.6 754 46.6
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 7.6e-147 525.8 861 40.3
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 2.5e-142 510.8 515 58.8
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 4.8e-141 506.5 566 56.0
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 3.4e-139 500.4 630 49.2
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 7.4e-134 482.6 906 39.1
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 9.6e-134 482.3 847 38.0
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 6.3e-109 399.8 363 62.8
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 3.0e-103 380.9 818 35.1
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 4.0e-87 327.4 381 51.2
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 1.1e-73 282.7 752 32.6
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 4.0e-71 274.2 555 37.1
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 9.2e-68 263.1 703 30.0
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 8.6e-66 256.5 419 40.6
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 1.5e-65 255.8 201 67.7
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.2e-62 246.1 333 47.1
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 6.0e-51 207.2 179 64.8
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 3.6e-48 198.0 244 50.0
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 3.1e-39 168.3 252 47.6
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 1.2e-35 156.4 158 58.2
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 8.1e-32 143.7 156 51.9
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 1.4e-28 132.9 146 53.4
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 5.1e-26 124.4 130 53.8
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 1.0e-21 110.2 125 51.2
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 1.5e-17 96.3 84 56.0
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 1.8e-15 89.4 51 82.4
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 3.1e-15 88.6 64 67.2
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 5.3e-15 87.8 213 36.2
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.4e-12 79.7 81 49.4
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 1.0e-10 73.6 189 41.3
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 3.1e-07 62.0 45 64.4
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 3.1e-07 62.0 45 64.4
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 4.1e-07 61.6 45 64.4
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 4.1e-07 61.6 45 64.4
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 6.9e-07 60.8 45 62.2
vmacro14087 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 1.2e-06 60.1 38 73.7


User provided reference genes

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