Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 4.1e-50 201.1 100 100.0
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 2.4e-42 175.3 101 86.1
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 2.7e-41 171.8 99 82.8
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 1.1e-39 166.4 103 83.5
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 4.7e-38 161.0 100 79.0
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 6.2e-38 160.6 102 80.4
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 1.2e-36 156.4 100 75.0
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 3.4e-36 154.8 95 80.0
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.9e-34 149.1 101 75.2
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 3.2e-34 148.3 97 79.4
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 5.4e-34 147.5 97 78.4
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.6e-33 146.0 109 68.8
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 2.7e-33 145.2 89 82.0
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 4.6e-33 144.4 80 83.8
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 4.6e-33 144.4 80 83.8
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 4.6e-33 144.4 80 82.5
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 7.8e-33 143.7 80 82.5
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 1.3e-32 142.9 100 71.0
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 1.7e-32 142.5 91 79.1
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 2.3e-32 142.1 100 71.0
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 2.3e-32 142.1 89 79.8
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 1.1e-31 139.8 100 73.0
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 1.5e-31 139.4 102 71.6
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 1.9e-31 139.0 98 71.4
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 5.6e-31 137.5 92 72.8
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 1.6e-30 136.0 95 71.6
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 2.1e-30 135.6 92 77.2
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 2.8e-30 135.2 95 70.5
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 4.8e-30 134.4 95 69.5
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 6.2e-30 134.0 97 73.2
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 6.2e-30 134.0 98 66.3
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 6.2e-30 134.0 89 76.4
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 8.1e-30 133.7 98 65.3
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 8.1e-30 133.7 100 66.0
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 1.1e-29 133.3 93 76.3
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 1.1e-29 133.3 95 67.4
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 1.4e-29 132.9 96 69.8
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 1.8e-29 132.5 92 68.5
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 3.1e-29 131.7 91 71.4
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 3.1e-29 131.7 95 67.4
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 4.0e-29 131.3 82 80.5
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 6.9e-29 130.6 84 78.6
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 9.0e-29 130.2 91 70.3
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 1.2e-28 129.8 95 68.4
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 1.5e-28 129.4 89 73.0
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 2.0e-28 129.0 97 68.0
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 2.0e-28 129.0 95 67.4
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 2.6e-28 128.6 98 64.3
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 3.4e-28 128.3 80 72.5
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 4.4e-28 127.9 95 66.3
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 4.4e-28 127.9 95 65.3
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 4.4e-28 127.9 88 69.3
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 5.8e-28 127.5 82 78.0
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 5.8e-28 127.5 87 71.3
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 7.6e-28 127.1 99 62.6
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 9.9e-28 126.7 95 65.3
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 9.9e-28 126.7 76 72.4
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 9.9e-28 126.7 95 65.3
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.3e-27 126.3 87 70.1
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.7e-27 125.9 95 64.2
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.7e-27 125.9 87 70.1
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 1.7e-27 125.9 84 67.9
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 2.2e-27 125.6 95 64.2
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 2.2e-27 125.6 82 70.7
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.9e-27 125.2 87 69.0
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 2.9e-27 125.2 95 64.2
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 2.9e-27 125.2 96 65.6
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 2.9e-27 125.2 98 62.2
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 4.9e-27 124.4 72 81.9
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 6.4e-27 124.0 90 68.9
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 8.4e-27 123.6 84 69.0
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.1e-26 123.2 87 69.0
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 1.1e-26 123.2 95 65.3
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 1.4e-26 122.9 95 64.2
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 3.2e-26 121.7 90 66.7
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 3.2e-26 121.7 85 65.9
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 3.2e-26 121.7 85 65.9
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 3.2e-26 121.7 85 67.1
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 4.2e-26 121.3 84 69.0
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 5.4e-26 120.9 97 61.9
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 7.1e-26 120.6 96 63.5
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 7.1e-26 120.6 96 63.5
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 1.2e-25 119.8 82 68.3
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 1.2e-25 119.8 82 68.3
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 1.2e-25 119.8 83 68.7
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 2.1e-25 119.0 85 64.7
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 2.1e-25 119.0 95 64.2
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 2.1e-25 119.0 80 71.2
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 2.7e-25 118.6 91 60.4
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 2.7e-25 118.6 84 69.0
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 3.5e-25 118.2 97 60.8
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 3.5e-25 118.2 86 65.1
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 1.0e-24 116.7 104 54.8
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 1.3e-24 116.3 77 71.4
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 1.7e-24 115.9 83 69.9
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 2.3e-24 115.5 91 64.8
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 3.0e-24 115.2 96 58.3
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 3.0e-24 115.2 92 66.3
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 3.0e-24 115.2 89 59.6
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 5.1e-24 114.4 114 57.0
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 1.1e-23 113.2 96 61.5
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.5e-23 112.8 79 68.4
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 1.9e-23 112.5 92 64.1
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 3.3e-23 111.7 89 59.6
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 4.3e-23 111.3 89 58.4
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 4.3e-23 111.3 99 53.5
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 4.3e-23 111.3 96 56.2
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 7.3e-23 110.5 90 61.1
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 7.3e-23 110.5 96 59.4
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 9.6e-23 110.2 74 67.6
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 1.3e-22 109.8 83 63.9
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 2.1e-22 109.0 89 65.2
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 2.8e-22 108.6 80 68.8
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 4.8e-22 107.8 98 54.1
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 8.1e-22 107.1 69 69.6
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 8.1e-22 107.1 67 71.6
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 8.1e-22 107.1 76 64.5
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 1.4e-21 106.3 72 63.9
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 1.8e-21 105.9 86 58.1
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 1.8e-21 105.9 86 58.1
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.8e-21 105.9 96 57.3
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.8e-21 105.9 96 57.3
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 2.4e-21 105.5 67 73.1
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 3.1e-21 105.1 78 66.7
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 6.9e-21 104.0 67 71.6
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 1.2e-20 103.2 97 56.7
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 1.2e-20 103.2 81 63.0
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 1.2e-20 103.2 97 54.6
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 2.6e-20 102.1 80 62.5
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 2.6e-20 102.1 96 56.2
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 3.4e-20 101.7 89 56.2
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 3.4e-20 101.7 89 56.2
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 3.4e-20 101.7 89 55.1
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 1.1e-18 96.7 92 53.3
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 2.7e-17 92.0 111 48.6
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 2.7e-17 92.0 86 55.8
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 4.6e-17 91.3 76 53.9
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 6.0e-17 90.9 72 62.5
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.3e-16 89.7 100 53.0
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 1.8e-16 89.4 76 53.9
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 3.9e-16 88.2 63 65.1
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 5.1e-16 87.8 75 54.7
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 1.1e-15 86.7 61 60.7
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 1.5e-15 86.3 88 48.9
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.5e-15 85.5 65 63.1
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 5.6e-15 84.3 84 51.2
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 9.6e-15 83.6 73 56.2
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 9.6e-15 83.6 56 66.1
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 9.6e-15 83.6 65 61.5
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 1.8e-13 79.3 61 59.0
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 2.6e-12 75.5 60 55.0
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 4.5e-12 74.7 50 66.0
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 6.5e-11 70.9 71 49.3
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 1.4e-10 69.7 44 70.5
BcaC06g34972 Brassica carinata HOM05D004571 ORTHO05D005334 3.5e-09 65.1 56 64.3
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 4.3e-07 58.2 42 66.7


User provided reference genes

Program Settings