Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 0.0e+00 1159.1 583 100.0
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 2.0e-285 985.3 589 85.9
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 1.6e-279 965.7 594 85.0
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 1.7e-276 955.7 601 82.5
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 6.1e-271 937.2 588 84.0
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 1.5e-269 932.6 608 81.1
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 7.6e-253 877.1 602 78.7
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 3.2e-251 871.7 601 78.4
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 2.1e-250 869.0 585 79.8
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 2.7e-250 868.6 601 77.9
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 4.6e-250 867.8 592 78.5
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 1.3e-249 866.3 592 78.0
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 2.4e-243 845.5 598 77.6
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 2.4e-243 845.5 598 77.6
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 2.4e-243 845.5 598 77.6
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 5.6e-240 834.3 596 76.5
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 5.6e-240 834.3 596 76.5
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 5.8e-237 824.3 587 76.1
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 3.2e-235 818.5 607 72.8
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 1.5e-232 809.7 597 72.4
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 1.1e-222 776.9 608 68.8
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 2.2e-212 742.7 522 74.9
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 2.1e-210 736.1 611 64.6
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 6.1e-202 708.0 604 64.4
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 2.0e-200 703.0 587 65.2
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 3.3e-200 702.2 511 71.4
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 1.4e-198 696.8 523 69.8
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 5.3e-198 694.9 595 64.5
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 3.4e-197 692.2 537 68.2
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 4.5e-197 691.8 508 69.3
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 3.2e-195 685.6 614 62.4
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 3.2e-195 685.6 621 62.6
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 3.2e-195 685.6 601 63.4
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 1.2e-194 683.7 590 62.7
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 3.6e-194 682.2 598 64.7
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 7.9e-194 681.0 537 67.6
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 6.7e-193 677.9 600 63.0
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 1.5e-192 676.8 607 60.8
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 2.6e-192 676.0 597 63.5
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 5.7e-192 674.9 560 64.6
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 9.7e-192 674.1 587 61.5
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 1.3e-191 673.7 540 65.7
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 8.2e-191 671.0 589 65.2
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 4.1e-190 668.7 570 65.8
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 4.1e-190 668.7 595 60.7
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 9.1e-190 667.5 580 63.4
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 2.0e-189 666.4 520 67.7
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 7.7e-189 664.5 607 60.5
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 7.7e-189 664.5 597 62.0
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.0e-188 664.1 614 61.4
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 2.9e-188 662.5 417 78.4
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 2.9e-188 662.5 595 61.7
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 6.5e-188 661.4 598 61.4
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 6.5e-188 661.4 603 61.5
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 4.2e-187 658.7 602 60.6
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 4.2e-187 658.7 599 62.8
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 5.5e-187 658.3 609 60.6
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 9.4e-187 657.5 560 63.4
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 1.2e-186 657.1 597 60.3
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 1.2e-186 657.1 597 61.0
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 2.1e-186 656.4 443 74.9
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 2.1e-186 656.4 612 60.0
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 2.7e-186 656.0 449 73.3
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 2.7e-186 656.0 579 61.8
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 3.6e-186 655.6 578 63.5
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 4.0e-185 652.1 521 65.8
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 5.2e-185 651.7 588 62.9
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 5.2e-185 651.7 588 61.6
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 6.7e-185 651.4 605 61.0
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 6.7e-185 651.4 610 60.2
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 6.7e-185 651.4 501 69.7
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 2.0e-184 649.8 413 78.2
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 2.6e-184 649.4 602 60.5
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 2.8e-183 646.0 593 60.5
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 6.3e-183 644.8 537 62.8
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 1.4e-182 643.7 550 65.5
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 7.0e-182 641.3 589 59.6
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 7.0e-182 641.3 593 61.7
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 2.7e-181 639.4 434 73.5
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 5.9e-181 638.3 533 66.2
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 5.9e-181 638.3 407 77.6
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 5.9e-181 638.3 559 62.6
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 7.7e-181 637.9 419 76.8
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 1.0e-180 637.5 601 58.2
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 2.2e-180 636.3 562 62.6
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 3.8e-180 635.6 616 59.4
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 8.5e-180 634.4 550 63.6
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 8.5e-180 634.4 603 59.5
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 1.1e-179 634.0 441 72.3
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 1.1e-179 634.0 604 59.9
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 1.5e-179 633.6 407 77.6
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 5.5e-179 631.7 539 62.9
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 9.4e-179 630.9 601 59.1
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 9.4e-179 630.9 604 59.4
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 2.1e-178 629.8 424 74.3
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 2.7e-178 629.4 427 73.3
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 6.1e-178 628.2 435 72.4
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 8.0e-178 627.9 538 63.2
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 5.2e-177 625.2 601 59.7
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 5.2e-177 625.2 545 62.6
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 8.8e-177 624.4 407 75.4
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 8.8e-177 624.4 601 58.6
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 1.5e-176 623.6 410 74.6
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.5e-176 623.6 610 59.2
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.5e-176 623.6 572 62.4
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 2.0e-176 623.2 573 62.3
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 2.6e-176 622.9 613 58.6
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 4.4e-176 622.1 512 63.5
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 5.7e-176 621.7 569 58.9
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.8e-175 619.4 608 58.4
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 3.7e-175 619.0 606 57.3
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 1.1e-174 617.5 409 75.3
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 1.4e-174 617.1 595 58.7
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 2.4e-174 616.3 585 61.5
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 3.1e-174 615.9 407 74.9
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 4.1e-174 615.5 609 58.5
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 5.4e-174 615.1 431 71.9
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.6e-173 613.6 608 58.2
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 4.5e-173 612.1 488 66.0
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 5.9e-173 611.7 626 57.7
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 1.1e-171 607.4 612 57.7
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 7.2e-171 604.7 507 63.1
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 7.2e-171 604.7 605 56.9
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 7.2e-171 604.7 581 58.5
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 9.4e-171 604.4 412 71.8
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 1.6e-170 603.6 571 58.8
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 1.6e-170 603.6 479 65.6
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 6.1e-170 601.7 550 59.5
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 7.0e-166 588.2 405 72.1
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 7.7e-165 584.7 407 70.8
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 1.0e-164 584.3 363 78.0
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 3.3e-163 579.3 596 55.5
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 8.3e-159 564.7 362 76.8
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 3.5e-157 559.3 406 68.0
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 2.1e-154 550.1 463 65.4
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 1.2e-146 524.2 423 64.8
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 1.7e-143 513.8 588 52.6
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 1.1e-142 511.1 416 62.5
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 1.9e-142 510.4 356 69.4
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 4.3e-139 499.2 441 59.6
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 9.6e-131 471.5 370 64.3
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 5.2e-129 465.7 373 65.4
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 6.8e-129 465.3 304 72.4
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 6.0e-109 399.1 209 91.4
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 6.5e-103 379.0 197 91.9
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 1.6e-93 347.8 385 50.4
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 3.9e-92 343.2 180 90.6
FAN04G1012 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.1e-78 298.5 392 49.5
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 2.2e-74 284.3 159 81.1
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 3.7e-74 283.5 156 82.7
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 3.7e-74 283.5 156 82.7
AagrBONN_evm.TU.Sc2ySwM_344.3442 Anthoceros agrestis HOM05D003880 ORTHO05D004959 7.7e-72 275.8 253 61.3
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 5.0e-63 246.5 188 64.9
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 3.2e-62 243.8 362 38.4
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 6.8e-60 236.1 184 68.5
HPP92_027627 Vanilla planifolia HOM05D003880 ORTHO05D004959 6.8e-52 209.5 155 69.0
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 2.2e-50 204.5 182 53.8
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 2.8e-50 204.1 151 70.9
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 3.1e-49 200.7 109 89.9
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 4.5e-48 196.8 129 77.5
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 1.7e-47 194.9 297 37.4
HPP92_019377 Vanilla planifolia HOM05D003880 ORTHO05D004959 2.3e-44 184.5 127 74.8
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 4.0e-36 157.1 110 69.1
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 2.6e-35 154.5 83 85.5
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 1.1e-33 149.1 83 81.9
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.6e-32 145.2 88 75.0
BcaB07g33153 Brassica carinata HOM05D003880 ORTHO05D019999 3.5e-32 144.1 97 77.3
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 3.5e-32 144.1 210 39.0
BcaB02g09679 Brassica carinata HOM05D003880 ORTHO05D019999 3.6e-29 134.0 166 50.6
Oeu021226.1 Olea europaea HOM05D003880 ORTHO05D019999 3.2e-25 120.9 101 65.3
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 4.7e-21 107.1 114 50.9
PRCOL_00005076 Prasinoderma coloniale HOM05D003880 ORTHO05D333288 3.1e-12 77.8 182 31.9
Lsat_1_v5_gn_1_10160 Lactuca sativa HOM05D003880 ORTHO05D019999 9.0e-12 76.3 49 75.5
CAN.G308.60 Capsicum annuum HOM05D003880 ORTHO05D000314 1.4e-09 68.9 111 40.5
Oeu004742.1 Olea europaea HOM05D003880 ORTHO05D004959 1.4e-09 68.9 234 32.5
COL.COLO4_03399 Corchorus olitorius HOM05D003880 ORTHO05D019999 1.1e-06 59.3 32 81.2
Rhsim01G0139900 Rhododendron simsii HOM05D002321 ORTHO05D006445 1.5e-06 58.9 57 57.9


User provided reference genes

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