Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 2.8e-112 408.7 216 100.0
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 3.5e-86 322.0 227 81.9
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 3.7e-80 302.0 226 80.1
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 2.0e-78 296.2 224 78.1
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 2.5e-76 289.3 222 75.7
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 7.3e-76 287.7 221 71.9
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 8.0e-75 284.3 222 74.3
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 2.9e-72 275.8 217 71.0
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 1.6e-70 270.0 221 67.9
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 1.6e-70 270.0 221 67.9
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 1.6e-70 270.0 221 67.9
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 4.6e-70 268.5 226 73.0
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 5.9e-70 268.1 216 70.8
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 2.3e-69 266.2 216 70.8
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 1.1e-68 263.8 221 70.6
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 4.3e-68 261.9 221 69.7
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 1.6e-67 260.0 222 69.8
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 1.6e-67 260.0 217 68.2
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 1.6e-67 260.0 222 69.8
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 2.1e-67 259.6 222 67.6
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 2.8e-67 259.2 217 68.2
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 4.9e-64 248.4 209 69.9
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 1.9e-52 209.9 208 60.6
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 1.2e-49 200.7 181 68.0
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 1.3e-48 197.2 226 54.4
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 7.1e-47 191.4 195 62.6
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 5.4e-39 165.2 218 51.4
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 1.0e-37 161.0 219 49.8
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 5.1e-37 158.7 219 52.5
Aa31LG7G6580 Aethionema arabicum HOM05D005065 ORTHO05D005944 2.1e-35 153.3 217 49.3
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 3.1e-34 149.4 215 48.8
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 1.0e-29 134.4 218 43.6
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 1.5e-28 130.6 199 46.7
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 9.6e-28 127.9 188 47.9
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 2.1e-27 126.7 226 45.6
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 3.6e-27 125.9 188 47.9
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 3.6e-27 125.9 188 47.3
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 1.8e-26 123.6 225 46.7
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 4.0e-26 122.5 224 47.8
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 1.5e-25 120.6 188 45.2
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 1.5e-25 120.6 224 45.1
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 2.0e-25 120.2 209 48.3
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 4.5e-25 119.0 222 42.8
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 1.7e-24 117.1 190 44.2
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.2e-24 116.7 213 41.3
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 2.2e-24 116.7 220 42.3
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 2.9e-24 116.3 205 42.4
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 3.8e-24 115.9 206 39.8
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 4.9e-24 115.5 209 42.6
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 6.4e-24 115.2 219 42.0
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 8.4e-24 114.8 223 46.6
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 8.4e-24 114.8 173 43.4
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 2.4e-23 113.2 208 41.8
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 3.2e-23 112.8 212 44.3
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 4.2e-23 112.5 176 46.0
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 2.1e-22 110.2 157 42.7
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 2.7e-22 109.8 227 39.6
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 3.5e-22 109.4 169 44.4
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 6.0e-22 108.6 184 43.5
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 6.0e-22 108.6 177 46.9
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 7.9e-22 108.2 162 42.6
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 7.9e-22 108.2 209 38.3
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.0e-21 107.8 216 39.8
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 1.0e-21 107.8 210 41.9
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 1.8e-21 107.1 211 40.3
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 1.8e-21 107.1 183 43.7
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 3.0e-21 106.3 177 42.9
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 8.7e-21 104.8 152 43.4
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 8.7e-21 104.8 156 43.6
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 8.7e-21 104.8 190 37.9
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 1.9e-20 103.6 202 41.1
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 2.5e-20 103.2 172 42.4
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 2.5e-20 103.2 212 38.2
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 3.3e-20 102.8 192 40.6
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 5.6e-20 102.1 169 41.4
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 7.4e-20 101.7 183 42.1
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 1.3e-19 100.9 211 38.4
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 1.6e-19 100.5 173 43.9
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 2.1e-19 100.1 201 39.8
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 2.1e-19 100.1 158 42.4
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 2.1e-19 100.1 198 39.9
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 1.1e-18 97.8 198 43.4
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 1.1e-18 97.8 174 43.7
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 1.4e-18 97.4 192 40.6
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 2.4e-18 96.7 174 42.5
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 4.0e-18 95.9 148 41.2
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 4.0e-18 95.9 192 38.5
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 4.0e-18 95.9 167 41.3
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 4.0e-18 95.9 173 41.6
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 6.9e-18 95.1 213 37.6
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 6.9e-18 95.1 164 43.3
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 9.0e-18 94.7 163 43.6
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 9.0e-18 94.7 164 43.3
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 1.2e-17 94.4 172 41.3
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 2.0e-17 93.6 179 39.1
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 2.0e-17 93.6 208 39.4
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 3.4e-17 92.8 202 39.6
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 5.8e-17 92.0 177 41.8
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 1.0e-16 91.3 192 38.5
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 1.0e-16 91.3 155 41.3
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 1.0e-16 91.3 167 41.3
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 1.3e-16 90.9 197 40.1
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 2.2e-16 90.1 217 37.3
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.9e-16 89.7 198 37.9
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 3.8e-16 89.4 160 36.9
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 3.8e-16 89.4 198 38.9
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 6.5e-16 88.6 168 41.1
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 8.4e-16 88.2 189 38.6
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 1.1e-15 87.8 188 39.9
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 1.4e-15 87.4 205 36.6
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 1.9e-15 87.0 195 39.5
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 4.2e-15 85.9 198 37.4
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 4.2e-15 85.9 186 43.0
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 1.2e-14 84.3 185 37.3
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 1.6e-14 84.0 163 41.7
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 2.1e-14 83.6 229 39.7
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 3.5e-14 82.8 178 33.7
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 1.0e-13 81.3 194 37.1
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 1.3e-13 80.9 159 36.5
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 2.3e-13 80.1 190 38.4
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 6.7e-13 78.6 154 37.7
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 1.1e-12 77.8 192 35.4
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 1.9e-12 77.0 211 34.6
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 7.4e-12 75.1 170 34.7
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 9.6e-12 74.7 154 34.4
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 1.6e-11 73.9 173 34.7
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 6.9e-10 68.6 176 36.4
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 6.9e-10 68.6 134 35.1
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 9.0e-10 68.2 155 36.1
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 1.5e-09 67.4 124 39.5
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 2.0e-09 67.0 149 41.6
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 7.6e-09 65.1 149 38.3
Medtr1g096610 Medicago truncatula HOM05D005065 ORTHO05D005944 1.3e-08 64.3 203 31.5
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 5.0e-08 62.4 207 32.9
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 1.1e-07 61.2 171 35.7
Rhsim11G0058400 Rhododendron simsii HOM05D005065 ORTHO05D005944 1.4e-07 60.8 97 38.1
HPP92_003138 Vanilla planifolia HOM05D005065 ORTHO05D005944 5.5e-07 58.9 139 32.4
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.6e-06 57.4 142 37.3
ATR0003G028 Amborella trichopoda HOM05D005065 ORTHO05D005944 3.6e-06 56.2 202 29.7
HPP92_005697 Vanilla planifolia HOM05D005065 ORTHO05D005944 7.9e-06 55.1 152 30.9


User provided reference genes

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