Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR064760 Cardamine hirsuta HOM05D003748 ORTHO05D004108 6.0e-74 280.8 146 100.0
Carub.0002s1873 Capsella rubella HOM05D003748 ORTHO05D004108 2.6e-37 159.1 106 84.9
Thhalv10019318m.g Eutrema salsugineum HOM05D003748 ORTHO05D004108 1.9e-32 142.9 103 80.6
AL2G31560 Arabidopsis lyrata HOM05D003748 ORTHO05D004108 4.8e-31 138.3 104 76.9
Sp5g27020 Schrenkiella parvula HOM05D003748 ORTHO05D004108 2.4e-30 136.0 103 75.7
BcaC03g15314 Brassica carinata HOM05D003748 ORTHO05D004108 3.4e-29 132.1 105 75.2
C02p29240 Brassica napus HOM05D003748 ORTHO05D004108 3.4e-29 132.1 105 75.2
BolC2t08974H Brassica oleracea HOM05D003748 ORTHO05D004108 3.4e-29 132.1 105 75.2
AT1G71950 Arabidopsis thaliana HOM05D003748 ORTHO05D004108 5.9e-29 131.3 107 74.8
BcaB05g24695 Brassica carinata HOM05D003748 ORTHO05D004108 1.3e-28 130.2 97 77.3
A02p17590 Brassica napus HOM05D003748 ORTHO05D004108 1.7e-28 129.8 91 80.2
BraA02t06805Z Brassica rapa HOM05D003748 ORTHO05D004108 1.7e-28 129.8 91 80.2
Aa31LG4G8670 Aethionema arabicum HOM05D003748 ORTHO05D004108 3.0e-25 119.0 96 70.8
THA.LOC104809742 Tarenaya hassleriana HOM05D003748 ORTHO05D004108 5.1e-25 118.2 93 72.0
BraA07t31377Z Brassica rapa HOM05D003748 ORTHO05D004108 1.3e-23 113.6 91 70.3
BcaC08g46636 Brassica carinata HOM05D003748 ORTHO05D004108 1.7e-23 113.2 90 70.0
BolC6t39656H Brassica oleracea HOM05D003748 ORTHO05D004108 1.7e-23 113.2 90 70.0
THA.LOC104800113 Tarenaya hassleriana HOM05D003748 ORTHO05D004108 4.8e-23 111.7 93 67.7
BcaC08g46634 Brassica carinata HOM05D003748 ORTHO05D004108 8.2e-23 110.9 66 86.4
A07p38120 Brassica napus HOM05D003748 ORTHO05D004108 2.4e-22 109.4 65 86.2
C06p46040 Brassica napus HOM05D003748 ORTHO05D004108 2.4e-22 109.4 65 86.2
BcaB03g14916 Brassica carinata HOM05D003748 ORTHO05D004108 5.3e-22 108.2 74 78.4
Duzib177G0476 Durio zibethinus HOM05D003748 ORTHO05D004108 5.3e-22 108.2 86 67.4
GSVIVG01012792001 Vitis vinifera HOM05D003748 ORTHO05D004108 2.6e-21 105.9 74 74.3
Gorai.013G140200 Gossypium raimondii HOM05D003748 ORTHO05D004108 1.0e-20 104.0 102 60.8
DCAR_014361 Daucus carota HOM05D003748 ORTHO05D004108 2.9e-20 102.4 74 71.6
SalBow6G2274 Salvia bowleyana HOM05D003748 ORTHO05D004108 3.8e-20 102.1 87 59.8
Gohir.D13G125300 Gossypium hirsutum HOM05D003748 ORTHO05D004108 5.0e-20 101.7 102 60.8
Nn5g27683 Nelumbo nucifera HOM05D003748 ORTHO05D004108 5.0e-20 101.7 100 57.0
Thecc.08G183900 Theobroma cacao HOM05D003748 ORTHO05D004108 6.5e-20 101.3 94 61.7
TPR.G22711 Trifolium pratense HOM05D003748 ORTHO05D004108 8.5e-20 100.9 88 60.2
TAR381G1195 Trochodendron aralioides HOM05D003748 ORTHO05D004108 1.1e-19 100.5 78 66.7
Cc10_g10370 Coffea canephora HOM05D003748 ORTHO05D004108 1.4e-19 100.1 74 70.3
FAN02G1714 Fragaria x ananassa HOM05D001133 ORTHO05D004108 1.9e-19 99.8 113 55.8
Psat6g091520 Pisum sativum HOM05D003748 ORTHO05D004108 2.5e-19 99.4 92 62.0
Sopen06g023850 Solanum pennellii HOM05D003748 ORTHO05D004108 2.5e-19 99.4 74 66.2
CAN.G199.10 Capsicum annuum HOM05D003748 ORTHO05D004108 3.2e-19 99.0 100 53.0
Hma1.2p1_0342F.1_g130730 Hydrangea macrophylla HOM05D003748 ORTHO05D004108 3.2e-19 99.0 97 59.8
FAN05G3939 Fragaria x ananassa HOM05D003748 ORTHO05D004108 4.2e-19 98.6 99 58.6
Gohir.A13G121200 Gossypium hirsutum HOM05D003748 ORTHO05D004108 5.5e-19 98.2 105 56.2
Ca_02751_v3 Cicer arietinum L. HOM05D003748 ORTHO05D004108 7.2e-19 97.8 103 55.3
Dinv41714 Davidia involucrata HOM05D003748 ORTHO05D004108 7.2e-19 97.8 92 62.0
Dinv03390 Davidia involucrata HOM05D003748 ORTHO05D004108 9.4e-19 97.4 92 60.9
Oeu038195.1 Olea europaea HOM05D003748 ORTHO05D004108 9.4e-19 97.4 66 68.2
RcHm_v2.0_Chr2g0129441 Rosa chinensis HOM05D003748 ORTHO05D004108 9.4e-19 97.4 97 58.8
ATR0584G219 Amborella trichopoda HOM05D003748 ORTHO05D004108 1.2e-18 97.1 96 57.3
ClCG11G008120 Citrullus lanatus HOM05D003748 ORTHO05D004108 1.2e-18 97.1 71 67.6
FAN09G3472 Fragaria x ananassa HOM05D003748 ORTHO05D004108 1.2e-18 97.1 99 58.6
Manes.18G101100 Manihot esculenta HOM05D003748 ORTHO05D004108 1.2e-18 97.1 77 66.2
Potri.013G112800 Populus trichocarpa HOM05D003748 ORTHO05D004108 1.2e-18 97.1 93 63.4
Migut.N03349 Erythranthe guttata HOM05D003748 ORTHO05D004108 1.6e-18 96.7 80 63.8
Solyc06g065370.3 Solanum lycopersicum HOM05D003748 ORTHO05D004108 1.6e-18 96.7 89 55.1
Haze_22521 Corylus avellana HOM05D003748 ORTHO05D004108 2.1e-18 96.3 95 55.8
FvH4_6g27290 Fragaria vesca HOM05D003748 ORTHO05D004108 2.1e-18 96.3 99 57.6
Potri.019G083300 Populus trichocarpa HOM05D003748 ORTHO05D004108 2.1e-18 96.3 82 63.4
MBI16_g07669_MAGBIO Magnolia biondii HOM05D003748 ORTHO05D004108 2.7e-18 95.9 83 61.4
TWI53G0775 Tripterygium wilfordii HOM05D003748 ORTHO05D004108 2.7e-18 95.9 95 57.9
arahy.Tifrunner.gnm1.ann1.2U5UH6 Arachis hypogaea HOM05D003748 ORTHO05D004108 3.6e-18 95.5 94 57.4
arahy.Tifrunner.gnm1.ann1.W37VG6 Arachis hypogaea HOM05D003748 ORTHO05D004108 3.6e-18 95.5 93 58.1
CSS0008856 Camellia sinensis var. sinensis HOM05D003748 ORTHO05D004108 3.6e-18 95.5 88 56.8
ClCG09G010620 Citrullus lanatus HOM05D003748 ORTHO05D004108 3.6e-18 95.5 78 59.0
Eucgr.F02610 Eucalyptus grandis HOM05D003748 ORTHO05D004108 4.7e-18 95.1 85 58.8
FAN14G5726 Fragaria x ananassa HOM05D003748 ORTHO05D004108 6.1e-18 94.7 99 56.6
Peaxi162Scf00268g01130 Petunia axillaris HOM05D003748 ORTHO05D004108 6.1e-18 94.7 80 60.0
Medtr1g050640 Medicago truncatula HOM05D003748 ORTHO05D004108 8.0e-18 94.4 59 76.3
TWI74G0020 Tripterygium wilfordii HOM05D003748 ORTHO05D004108 8.0e-18 94.4 90 54.4
Cfa013847 Carpinus fangiana HOM05D003748 ORTHO05D004108 1.0e-17 94.0 95 54.7
CsaV3_2G033500 Cucumis sativus L. HOM05D003748 ORTHO05D004108 1.0e-17 94.0 98 54.1
Lalb_Chr01g0010201 Lupinus albus HOM05D003748 ORTHO05D004108 1.0e-17 94.0 95 56.8
Rhsim06G0096300 Rhododendron simsii HOM05D003748 ORTHO05D004108 1.0e-17 94.0 72 63.9
Atru.chr13.1761_Atru.chr13.1772 Acer truncatum HOM05D003748 ORTHO05D004108 1.4e-17 93.6 96 55.2
arahy.Tifrunner.gnm1.ann1.14DQKS Arachis hypogaea HOM05D003748 ORTHO05D004108 1.4e-17 93.6 64 70.3
arahy.Tifrunner.gnm1.ann1.V86M3D Arachis hypogaea HOM05D003748 ORTHO05D004108 1.4e-17 93.6 64 70.3
Cpa.g.sc66.42 Carica papaya HOM05D003748 ORTHO05D004108 1.4e-17 93.6 74 64.9
Ciclev10002870m.g Citrus clementina HOM05D003748 ORTHO05D004108 1.4e-17 93.6 99 57.6
COL.COLO4_04234 Corchorus olitorius HOM05D003748 ORTHO05D004108 1.4e-17 93.6 81 66.7
Manes.02G192300 Manihot esculenta HOM05D003748 ORTHO05D004108 1.4e-17 93.6 95 56.8
Phvul.007G245700 Phaseolus vulgaris HOM05D003748 ORTHO05D004108 1.4e-17 93.6 96 55.2
Prupe.8G057500 Prunus persica HOM05D003748 ORTHO05D004108 1.4e-17 93.6 102 55.9
Sed0020042 Sechium edule HOM05D003748 ORTHO05D004108 1.4e-17 93.6 89 57.3
ClCG09G010270 Citrullus lanatus HOM05D003748 ORTHO05D004108 1.8e-17 93.2 63 69.8
Nitab4.5_0000303g0140 Nicotiana tabacum HOM05D003748 ORTHO05D004108 1.8e-17 93.2 87 58.6
CiPaw.07G159900 Carya illinoinensis HOM05D003748 ORTHO05D004108 2.3e-17 92.8 83 61.4
MELO3C008123.2 Cucumis melo HOM05D003748 ORTHO05D004108 2.3e-17 92.8 93 55.9
Lj5g0010218 Lotus japonicus HOM05D003748 ORTHO05D004108 2.3e-17 92.8 59 74.6
Sabra13G0095600 Salix brachista HOM05D003748 ORTHO05D004108 2.3e-17 92.8 99 56.6
SGA_v2.0_scaffold25G11069 Striga asiatica HOM05D003748 ORTHO05D004108 2.3e-17 92.8 113 46.9
VMungo0720G2071 Vigna mungo HOM05D003748 ORTHO05D004108 2.3e-17 92.8 98 53.1
PGSC0003DMG400026076 Solanum tuberosum HOM05D003748 ORTHO05D004108 3.0e-17 92.4 74 64.9
Aqoxy5G02591 Aquilegia oxysepala HOM05D003748 ORTHO05D004108 3.9e-17 92.0 76 64.5
Oeu039618.1 Olea europaea HOM05D003748 ORTHO05D004108 3.9e-17 92.0 92 54.3
PSO017G4343 Papaver somniferum HOM05D003748 ORTHO05D004108 3.9e-17 92.0 88 59.1
vmacro12490 Vaccinium macrocarpon HOM05D003748 ORTHO05D004108 3.9e-17 92.0 92 54.3
Sed0006671 Sechium edule HOM05D003748 ORTHO05D004108 5.2e-17 91.7 91 56.0
Glyma.02G158200 Glycine max HOM05D003748 ORTHO05D004108 6.7e-17 91.3 91 54.9
MD05G1041700 Malus domestica HOM05D003748 ORTHO05D004108 6.7e-17 91.3 104 51.9
Peaxi162Scf00560g00736 Petunia axillaris HOM05D003748 ORTHO05D004108 6.7e-17 91.3 78 60.3
Sed0001630 Sechium edule HOM05D003748 ORTHO05D004108 6.7e-17 91.3 94 57.4
Actinidia02577 Actinidia chinensis HOM05D003748 ORTHO05D004108 8.8e-17 90.9 90 54.4
MSTRG.22452 Avicennia marina HOM05D003748 ORTHO05D004108 8.8e-17 90.9 91 50.5
PSO063G2175 Papaver somniferum HOM05D003748 ORTHO05D004108 8.8e-17 90.9 88 58.0
CANSAT64G1217 Cannabis sativa HOM05D003748 ORTHO05D004108 1.5e-16 90.1 94 54.3
Lsat_1_v5_gn_6_110641 Lactuca sativa HOM05D003748 ORTHO05D004108 1.5e-16 90.1 88 55.7
QL02p033706 Quercus lobata HOM05D003748 ORTHO05D004108 1.5e-16 90.1 72 65.3
MD10G1048200 Malus domestica HOM05D003748 ORTHO05D004108 2.6e-16 89.4 92 57.6
HanXRQChr09g0260341 Helianthus annuus HOM05D003748 ORTHO05D004108 3.3e-16 89.0 74 59.5
MBI09_g01930_MAGBIO Magnolia biondii HOM05D003748 ORTHO05D004108 3.3e-16 89.0 74 60.8
CsaV3_7G024420 Cucumis sativus L. HOM05D003748 ORTHO05D004108 5.7e-16 88.2 82 59.8
MELO3C024124.2 Cucumis melo HOM05D003748 ORTHO05D004108 7.4e-16 87.8 62 66.1
Lalb_Chr19g0129451 Lupinus albus HOM05D003748 ORTHO05D004108 7.4e-16 87.8 100 55.0
MELO3C028637.2 Cucumis melo HOM05D003748 ORTHO05D004108 9.7e-16 87.4 62 67.7
Lj7A290T41 Lonicera japonica HOM05D003748 ORTHO05D004108 1.3e-15 87.0 67 64.2
HPP92_003143 Vanilla planifolia HOM05D003748 ORTHO05D004108 1.3e-15 87.0 78 57.7
HPP92_003146 Vanilla planifolia HOM05D003748 ORTHO05D004108 1.3e-15 87.0 78 57.7
unitig_61.g26074 Utricularia gibba HOM05D003748 ORTHO05D004108 1.7e-15 86.7 90 53.3
Nitab4.5_0000807g0010 Nicotiana tabacum HOM05D003748 ORTHO05D004108 2.2e-15 86.3 67 61.2
PGSC0003DMG400000891 Solanum tuberosum HOM05D003748 ORTHO05D004108 2.8e-15 85.9 75 56.0
CDE06G2501 Ceratophyllum demersum HOM05D003748 ORTHO05D004108 3.7e-15 85.5 96 50.0
MELO3C008122.2 Cucumis melo HOM05D001651 ORTHO05D004108 3.7e-15 85.5 71 60.6
MELO3C023644.2 Cucumis melo HOM05D003748 ORTHO05D004108 4.8e-15 85.1 91 50.5
Sabra11G0052500 Salix brachista HOM05D003748 ORTHO05D004108 4.8e-15 85.1 90 52.2
CsaV3_7G024410 Cucumis sativus L. HOM05D003748 ORTHO05D004108 6.3e-15 84.7 89 55.1
Sabra19G0072000 Salix brachista HOM05D003748 ORTHO05D004108 6.3e-15 84.7 84 54.8
Lalb_Chr19g0129441 Lupinus albus HOM05D003748 ORTHO05D004108 1.4e-14 83.6 100 55.0
Sabra11G0051700 Salix brachista HOM05D000022 ORTHO05D000071 1.4e-14 83.6 76 56.6
ECA246G4702 Erigeron canadensis HOM05D003748 ORTHO05D004108 2.4e-14 82.8 62 62.9
HanXRQChr05g0150261 Helianthus annuus HOM05D003748 ORTHO05D004108 2.4e-14 82.8 61 65.6
Sabra15G0067400 Salix brachista HOM05D003748 ORTHO05D004108 2.4e-14 82.8 87 52.9
Oeu021207.1 Olea europaea HOM05D003748 ORTHO05D004108 3.1e-14 82.4 84 50.0
Sabra15G0037700 Salix brachista HOM05D003748 ORTHO05D004108 3.1e-14 82.4 89 49.4
Ciclev10007132m.g Citrus clementina HOM05D003748 ORTHO05D004108 4.1e-14 82.0 55 72.7
HPP92_025042 Vanilla planifolia HOM05D003748 ORTHO05D004108 5.3e-14 81.6 73 54.8
Sabra10G0094400 Salix brachista HOM05D003748 ORTHO05D004108 7.0e-14 81.3 62 61.3
Sabra11G0049800 Salix brachista HOM05D003748 ORTHO05D004108 7.0e-14 81.3 95 51.6
CDE08G0273 Ceratophyllum demersum HOM05D003748 ORTHO05D004108 9.1e-14 80.9 96 47.9
MD11G1194700 Malus domestica HOM05D003748 ORTHO05D004108 1.2e-13 80.5 65 61.5
Hund16797 Selenicereus undatus HOM05D003748 ORTHO05D004108 1.2e-13 80.5 99 54.5
CANSAT56G2356 Cannabis sativa HOM05D003748 ORTHO05D004108 1.6e-13 80.1 63 66.7
Nitab4.5_0002500g0020 Nicotiana tabacum HOM05D003748 ORTHO05D004108 1.6e-13 80.1 101 48.5
Sabra16G0264300 Salix brachista HOM05D003748 ORTHO05D004108 1.6e-13 80.1 84 54.8
Sc23g0001260 Simmondsia chinensis HOM05D003748 ORTHO05D004108 2.0e-13 79.7 87 49.4
AUR62004641 Chenopodium quinoa HOM05D003748 ORTHO05D004108 2.6e-13 79.3 102 48.0
HanXRQChr05g0150061 Helianthus annuus HOM05D003748 ORTHO05D004108 2.6e-13 79.3 92 50.0
Ah.05g178170 Amaranthus hybridus HOM05D003748 ORTHO05D004108 3.5e-13 79.0 92 51.1
Sopen11g009560 Solanum pennellii HOM05D003748 ORTHO05D004108 4.5e-13 78.6 65 58.5
HPP92_000073 Vanilla planifolia HOM05D003748 ORTHO05D004108 5.9e-13 78.2 91 48.4
AUR62022695 Chenopodium quinoa HOM05D003748 ORTHO05D004108 1.3e-12 77.0 75 57.3
Os05g0432700 Oryza sativa ssp. japonica HOM05D003748 ORTHO05D004108 1.3e-12 77.0 99 41.4
MBI09_g40923_MAGBIO Magnolia biondii HOM05D003748 ORTHO05D004108 1.7e-12 76.6 74 55.4
EL10Ac1g00087 Beta vulgaris HOM05D003748 ORTHO05D004108 2.2e-12 76.3 86 52.3
ECA232G2068 Erigeron canadensis HOM05D003748 ORTHO05D004108 2.2e-12 76.3 63 60.3
FAN14G4728 Fragaria x ananassa HOM05D003748 ORTHO05D004108 2.2e-12 76.3 96 49.0
HPP92_001081 Vanilla planifolia HOM05D003748 ORTHO05D004108 2.2e-12 76.3 70 52.9
ATR0620G025 Amborella trichopoda HOM05D003748 ORTHO05D004108 2.9e-12 75.9 94 46.8
PGR042G3867 Punica granatum HOM05D003748 ORTHO05D004108 5.0e-12 75.1 90 48.9
SEGI_17758 Sequoiadendron giganteum HOM05D003748 ORTHO05D004108 5.0e-12 75.1 68 52.9
Zm00001eb289210 Zea mays HOM05D003748 ORTHO05D004108 5.0e-12 75.1 89 43.8
CSS0005693 Camellia sinensis var. sinensis HOM05D003748 ORTHO05D004108 8.5e-12 74.3 106 46.2
Solyc11g018590.1 Solanum lycopersicum HOM05D003748 ORTHO05D004108 8.5e-12 74.3 65 53.8
SGA_v2.0_scaffold149G36586 Striga asiatica HOM05D003748 ORTHO05D004108 8.5e-12 74.3 91 48.4
CAN.G493.1 Capsicum annuum HOM05D003748 ORTHO05D004108 1.1e-11 73.9 65 56.9
FvH4_6g27310 Fragaria vesca HOM05D003748 ORTHO05D004108 2.5e-11 72.8 58 63.8
FAN02G3522 Fragaria x ananassa HOM05D003748 ORTHO05D004108 2.5e-11 72.8 58 63.8
CsaV3_7G023810 Cucumis sativus L. HOM05D003748 ORTHO05D004108 7.2e-11 71.2 93 45.2
FAN09G2657 Fragaria x ananassa HOM05D003748 ORTHO05D004108 1.2e-10 70.5 58 62.1
Sed0014127 Sechium edule HOM05D003748 ORTHO05D004108 1.6e-10 70.1 87 48.3
Zm00001eb306170 Zea mays HOM05D003748 ORTHO05D004108 3.0e-09 65.9 101 41.6
ClCG09G010610 Citrullus lanatus HOM05D003748 ORTHO05D004108 5.2e-09 65.1 89 39.3
HPP92_006842 Vanilla planifolia HOM05D003748 ORTHO05D004108 5.2e-09 65.1 75 44.0
Zm00001eb096790 Zea mays HOM05D003748 ORTHO05D004108 5.2e-09 65.1 91 42.9
AagrBONN_evm.TU.Sc2ySwM_228.5131 Anthoceros agrestis HOM05D003748 ORTHO05D004108 4.4e-08 62.0 74 44.6
MELO3C024123.2 Cucumis melo HOM05D003748 ORTHO05D004108 5.7e-08 61.6 89 40.4
Os07g0438600 Oryza sativa ssp. japonica HOM05D003748 ORTHO05D004108 1.1e-06 57.4 60 48.3
Glyma.05G151000 Glycine max HOM05D000015 ORTHO05D001173 2.4e-06 56.2 74 45.9
Gohir.A02G095500 Gossypium hirsutum HOM05D000015 ORTHO05D001173 4.1e-06 55.5 65 46.2
Lj4g0013959 Lotus japonicus HOM05D000015 ORTHO05D001173 5.3e-06 55.1 79 43.0
Duzib205G0852 Durio zibethinus HOM05D000015 ORTHO05D001173 7.0e-06 54.7 70 42.9
Phvul.011G012100 Phaseolus vulgaris HOM05D000015 ORTHO05D001173 9.1e-06 54.3 76 40.8


User provided reference genes

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